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niman
PostPosted: Tue Nov 01, 2011 9:05 am 
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Location: Pittsburgh, PA USA
CDC has released sequences for another H3N2 target, A/Iowa/16/2010

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niman
PostPosted: Tue Nov 01, 2011 9:06 am 
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niman wrote:
CDC has released sequences for another H3N2 target, A/Iowa/16/2010

H3 REASSORTANT WITH A/PR/8/34 PB2,PB1,PA,NS, AND M GENES

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niman
PostPosted: Tue Nov 01, 2011 9:13 am 
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Location: Pittsburgh, PA USA
Top 100 matches

EPI340958 A/Iowa/19/2010 X-209A (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI326342 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 3134.9 0.000000e+00 1699/1701 (99%)
EPI319241 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%)
EPI309763 A/IOWA/19/2010 (A/H3N2) segment 4 (HA) 3127.5 0.000000e+00 1698/1701 (99%)
EPI340956 A/Iowa/19/2010 X-209 (A/H3N2) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%)
EPI335948 A/Santiago/18454/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI335923 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI335861 A/Argentina/676/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI325969 A/Mexico City/WRAIR3579T/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI319740 A/Minnesota/09/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI319128 A/Illinois/NHRC0002/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI316114 A/Mississippi/03/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI309464 A/Wyoming/04/2011 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI302319 A/Iowa/12/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI302304 A/Iowa/11/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI301737 A/Arkansas/03/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI301125 A/Nebraska/03/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI301121 A/Arkansas/05/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI301101 A/Texas/12/2010 (A/H3N2) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%)
EPI319656 A/California/22/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI316181 A/Rhode Island/04/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI309581 A/Georgia/01/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI309563 A/Delaware/02/2011 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI309387 A/Mexico/6605/2010 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI309362 A/Illinois/01/2010 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI302327 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 3116.4 0.000000e+00 1696/1701 (99%)
EPI335946 A/Santiago/14944/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI335943 A/Santiago/13652/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI334570 A/Mexico City/WRAIR3569N/2010(H3N2) (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325961 A/Mexico City/WRAIR3579N/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325937 A/Mexico City/WRAIR3577T/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325929 A/Mexico City/WRAIR3571N/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325905 A/Mexico City/WRAIR3569T/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325889 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI325881 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI320357 A/California/NHRC0004/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI320349 A/California/NHRC0003/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI320341 A/California/NHRC0002/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI319650 A/Arizona/03/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI319248 A/Ireland/11M27357/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI316239 A/Wisconsin/09/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI316209 A/Vermont/03/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI316200 A/Texas/06/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI316013 A/Alabama/01/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI309455 A/Colorado/01/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI309431 A/Texas/26/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI309405 A/Costa Rica/0096/2001 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI309373 A/Texas/23/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI302243 A/South Dakota/02/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI301759 A/Oklahoma/02/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI301111 A/California/27/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI301047 A/Georgia/19/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI301027 A/Colorado/05/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI301018 A/Florida/27/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI295199 A/Belize/3715/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI295193 A/Texas/07/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI291556 A/Costa Rica/6696/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI287082 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI279988 A/Mexico/4056/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI279979 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI279967 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI279961 A/Florida/11/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI278766 A/Dominican Republic/4319/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI278760 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI316028 A/Delaware/03/2011 (A/H3N2) segment 4 (HA) 3112.7 0.000000e+00 1695/1701 (99%)
EPI326311 A/Nevada/06/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI316149 A/North Dakota/04/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI309535 A/New Mexico/01/2011 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI309391 A/Mexico/7027/2010 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI302295 A/Delaware/06/2010 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI301747 A/Idaho/01/2010 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI295054 A/California/18/2010 (A/H3N2) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%)
EPI340936 A/Paraguay/210/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI335931 A/Paraguay/210/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI335863 A/Argentina/8823/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI334620 A/Louisiana/02/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI334608 A/California/34/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI325977 A/Mexico City/WRAIR3580T/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI325953 A/Mexico City/WRAIR3578T/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI325945 A/Mexico City/WRAIR3578N/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI320636 A/Managua/3424.01/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI319844 A/Wisconsin/20/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI319678 A/Georgia/03/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI319661 A/Connecticut/03/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI316888 A/Uppsala/3/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI316871 A/Uppsala/2/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI316173 A/Peru/8410/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI316129 A/Nebraska/09/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI316040 A/District of Columbia/03/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309729 A/H3N2Genoa/01/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309616 A/Texas/05/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309578 A/Argentina/8409/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309493 A/Maryland/07/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309481 A/South Carolina/01/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309472 A/Ohio/01/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309438 A/Guadeloupe/129/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309428 A/Louisiana/06/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309409 A/California/01/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI309394 A/Nebraska/02/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI302268 A/British Columbia/RV29/2011 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)

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