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PostPosted: Tue Nov 01, 2011 6:33 am 
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CDC has released new trH3N2 sequences (at GISAID) from Indiana (A/Indiana/11/2011) and Maine (A/Maine/07/2011) at GISAID with M gene from H1N1pdm09.

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PostPosted: Tue Nov 01, 2011 6:39 am 
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niman wrote:
CDC has released new trH3N2 sequences (at GISAID) from Indiana (A/Indiana/11/2011) and Maine (A/Maine/07/2011) at GISAID with M gene from H1N1pdm09.

Maine case is 8M collected Oct 24 (earlier case was collected Oct 10).

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PostPosted: Tue Nov 01, 2011 6:40 am 
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Location: Pittsburgh, PA USA
niman wrote:
CDC has released new trH3N2 sequences (at GISAID) from Indiana (A/Indiana/11/2011) and Maine (A/Maine/07/2011) at GISAID with M gene from H1N1pdm09.

Indiana case is 59M collected Oct 22.

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PostPosted: Tue Nov 01, 2011 6:48 am 
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Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
CDC has released new trH3N2 sequences (at GISAID) from Indiana (A/Indiana/11/2011) and Maine (A/Maine/07/2011) at GISAID with M gene from H1N1pdm09.

Indiana case is 59M collected Oct 22.

Top 100 HA matches for Maine/07 (230 BP)

EPI340976 A/Maine/07/2011 (A/H3N2) segment 4 (HA) 425.8 4.088556e-118 230/230 (100%)
EPI340984 A/Indiana/11/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI335629 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 420.3 1.902220e-116 229/230 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 414.8 8.850169e-115 228/230 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 414.8 8.850169e-115 228/230 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 414.8 8.850169e-115 228/230 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 409.2 4.117583e-113 227/230 (98%)
EPI335618 A/Pennsylvania/11/2011 (A/H3N2) segment 4 (HA) 407.4 1.480946e-112 224/226 (99%)
EPI335623 A/Pennsylvania/10/2011 (A/H3N2) segment 4 (HA) 388.9 5.364246e-107 214/216 (99%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 381.5 8.976280e-105 221/228 (96%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 381.5 8.976280e-105 220/227 (96%)
EPI235271 A/swine/North Carolina/2003 (A/H3N2) segment 4 (HA) 381.5 8.976280e-105 223/231 (96%)
EPI24166 A/Netherlands/91/96 (A/H3N2) segment 4 (HA) 381.5 8.976280e-105 223/231 (96%)
EPI8292 A/Athens/76/98 (A/H3N2) segment 4 (HA) 381.5 8.976280e-105 222/230 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 223/232 (96%)
EPI292013 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI176077 A/Siena/3/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI161141 A/Hong Kong/CUHK4147/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI161023 A/Hong Kong/CUHK18886/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI106532 A/Oslo/99/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI105502 A/Rabat/18/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/229 (96%)
EPI92131 A/New York/506/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI91808 A/New York/548/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI91789 A/New York/547/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI91770 A/New York/546/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI91694 A/New York/541/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI91504 A/New York/522/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI91428 A/New York/518/1998 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI90858 A/New York/505/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 221/230 (96%)
EPI36422 A/New York/639/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI35472 A/New York/647/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI34655 A/New York/641/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI34617 A/New York/635/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI34579 A/New York/624/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI34541 A/New York/571/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI33185 A/New York/623/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI33033 A/New York/648/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32995 A/New York/637/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32976 A/New York/634/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32938 A/New York/628/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32900 A/New York/622/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32881 A/New York/619/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32862 A/New York/618/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32843 A/New York/613/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32824 A/New York/612/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32805 A/New York/611/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32786 A/New York/610/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32767 A/New York/609/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI32729 A/New York/606/1995 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI31399 A/New York/596/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI31304 A/New York/582/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI30582 A/New York/587/1996 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI30525 A/New York/581/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI30108 A/New York/579/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI30032 A/New York/569/1997 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24198 A/Nice/491/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24170 A/Finland/381/95 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24164 A/Hongkong/20/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24162 A/Lyon/2279/95 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24160 A/Netherlands/271/95 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI24154 A/Victoria/75/95 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI8703 A/Paris/908/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 223/232 (96%)
EPI8701 A/Paris/906/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI8699 A/Paris/896/97 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI8294 A/Athens/94/98 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI8007 A/Swine/Wisconsin/14094/99 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI8005 A/Swine/Oklahoma/18089/99 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI8001 A/Swine/Oklahoma/18717/99 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 220/228 (96%)
EPI5674 A/Lyon/1781/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI5672 A/Lyon/1781/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI5670 A/Lyon/1781/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI4158 A/Vienna/47/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI4154 A/Vienna/47/96 (A/H3N2) segment 4 (HA) 376.0 4.176257e-103 222/231 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 372.3 5.402330e-102 222/231 (96%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 220/229 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 220/229 (96%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 220/229 (96%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 220/229 (96%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 220/229 (96%)
EPI316991 A/swine/Iowa/A0109035/2010 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 218/227 (96%)
EPI316990 A/swine/Iowa/A0109034/2010 (A/H3N2) segment 4 (HA) 370.5 1.943023e-101 218/227 (96%)

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PostPosted: Tue Nov 01, 2011 6:51 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 NP matches

EPI340974 A/Maine/07/2011 (A/H3N2) segment 5 (NP) 486.8 2.148272e-136 263/263 (100%)
EPI340977 A/Indiana/11/2011 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI339164 A/Maine/06/2011 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI335619 A/Pennsylvania/11/2011 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI312981 A/Pennsylvania/40/2010 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI302671 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI302670 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI291892 A/Wisconsin/12/2010 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI291864 A/Pennsylvania/14/2010 (A/H3N2) segment 5 (NP) 481.2 9.994935e-135 262/263 (99%)
EPI335630 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 475.7 4.650191e-133 261/263 (99%)
EPI333146 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 475.7 4.650191e-133 261/263 (99%)
EPI314792 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 5 (NP) 475.7 4.650191e-133 261/263 (99%)
EPI302683 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 5 (NP) 475.7 4.650191e-133 262/264 (99%)
EPI302682 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 5 (NP) 475.7 4.650191e-133 261/263 (99%)
EPI244301 A/Kansas/13/2009 (A/H3N2) segment 5 (NP) 475.7 4.650191e-133 261/263 (99%)
EPI293966 A/Minnesota/11/2010 (A/H3N2) segment 5 (NP) 472.0 6.015402e-132 260/263 (98%)
EPI337039 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 5 (NP) 470.2 2.163523e-131 260/263 (98%)
EPI337034 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 5 (NP) 470.2 2.163523e-131 260/263 (98%)
EPI335611 A/Pennsylvania/09/2011 (A/H3N2) segment 5 (NP) 470.2 2.163523e-131 260/263 (98%)
EPI291837 A/Minnesota/09/2010 (A/H3N2) segment 5 (NP) 470.2 2.163523e-131 260/263 (98%)
EPI312650 A/swine/Indiana/240218/2010 (A/H1N2) segment 5 (NP) 464.6 1.006590e-129 259/263 (98%)
EPI291822 A/Michigan/09/2007 (A/H1N2) segment 5 (NP) 464.6 1.006590e-129 259/263 (98%)
EPI337954 A/swine/Illinois/02450/2008 (A/H0) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337532 A/swine/Minnesota/001332/2006 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337524 A/swine/Minnesota/001581/2007 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337500 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337428 A/swine/Indiana/00427/2004 (A/H1N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337404 A/swine/Minnesota/02782/2009 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337396 A/swine/Illinois/02064/2008 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI314634 A/swine/QC/2108-2/2009 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI295328 A/swine/South Dakota/152B/2009 (A/H1N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI281254 A/swine/North Carolina/02023/2008 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI280413 A/swine/Iowa/H04YS2/2004 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI226731 A/Iowa/CEID23/2005 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI164055 A/swine/Korea/CAS09/2006 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI164054 A/swine/Korea/CAS07/2005 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI164053 A/swine/Korea/CAN04/2005 (A/H3N2) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 453.5 2.178884e-126 257/263 (97%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 451.7 7.836660e-126 256/262 (97%)
EPI337604 A/swine/Illinois/02510/2009 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337596 A/swine/Illinois/01917/2007 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337588 A/swine/Illinois/01918/2007 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337580 A/swine/Illinois/02385/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337572 A/swine/Illinois/02695/2009 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337556 A/swine/Illinois/02251/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337444 A/swine/Minnesota/00611/2005 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337412 A/swine/Minnesota/01862/2007 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337388 A/swine/Nebraska/00722/2005 (A/H0) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI337372 A/swine/Illinois/02238/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI335060 A/swine/North Carolina/47834/2000 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI327286 A/swine/Texas/4199-2/1998 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI324097 A/swine/QC/3399-6/2009 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI324036 A/swine/QC/1695-3/2009 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI324019 A/swine/QC/1531-3/2009 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI323282 A/swine/Minnesota/7931/2007 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI314334 A/turkey/BC/1529-3/2005 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI292004 A/swine/Iowa/H02PW7/2002 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI291998 A/swine/Iowa/H03HS5/2003 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI291829 A/Minnesota/03/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI291806 A/Iowa/05/2007 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI281256 A/swine/Minnesota/02011/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI281255 A/swine/Missouri/02060/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI281252 A/swine/Nebraska/02013/2008 (A/H1N1) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI229375 A/turkey/OH/313053/2004 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220908 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220900 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220892 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220884 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220876 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220868 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220860 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220852 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220844 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220836 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220828 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220820 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220812 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220804 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220796 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220788 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220780 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI220772 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)
EPI184472 A/mallard/South Dakota/Sg-00128/2007 (A/H3N2) segment 5 (NP) 448.0 1.013736e-124 256/263 (97%)

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PostPosted: Tue Nov 01, 2011 6:57 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top MP matches

EPI340975 A/Maine/07/2011 (A/H3N2) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI339166 A/Maine/06/2011 (A/H3N2) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI333540 A/District of Columbia/WRAIR0303/2010 (A/H1N1) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI333516 A/District of Columbia/WRAIR0307/2010 (A/H1N1) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI332711 A/Phiippines/TMC10-79/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI332380 A/Melbourne/INS471/2010 (A/H1N1) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI331421 A/TOWNSVILLE/31/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI320532 A/Hangzhou/A61/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI320162 A/Vermont/04/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI320102 A/New York/04/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI320040 A/Massachusetts/09/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310171 A/Wisconsin/02/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310134 A/Vermont/04/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310067 A/North Carolina/03/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310053 A/New York/02/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310047 A/New Jersey/03/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI310000 A/Massachusetts/06/2011 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI308706 A/Cologne/INS285/2009 (A/H0) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI305181 A/CastillaLaMancha/RR4969/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI301266 A/SAITAMA-C/174/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI294355 A/SOUTH AUSTRALIA/346/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI294346 A/DARWIN/150/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI294325 A/DARWIN/146/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI294136 A/SOUTH AUSTRALIA/34/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI286666 A/KANAGAWA/64/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI286664 A/IBARAKI/169/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284205 A/Kenya/0015/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284204 A/Kenya/0055/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284198 A/Kenya/0043/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284195 A/Kenya/0016/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284190 A/Kenya/0011/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284179 A/Kenya/0005/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284168 A/Kenya/0065/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI284166 A/Kenya/0063/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI278706 A/YOKOSUKA/52/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI278703 A/YOKOSUKA/51/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI278700 A/YOKOSUKA/50/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI278697 A/YOKOSUKA/49/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI278694 A/YOKOSUKA/48/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI272964 A/Lisboa/73/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI272634 A/YAMANASHI/137/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI272607 A/NIIGATA/529/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI272572 A/SAITAMA/81/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI259274 A/Athens/INS122/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI257969 A/Beijing-Huairou/SWL1282/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI257609 A/Hunan-Lengshuitan/SWL131/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI257277 A/Fujian-Gulou/SWL11954/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI256203 A/Shanxi-Linxian/SWL323/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI254072 A/New York/6806/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI253401 A/Henan/SWL14/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI252581 A/New York/6772/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI252189 A/Georgia/07/2010 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI247391 A/New York/109/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI244815 A/Australia/11/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI223298 A/Texas/42163291/2009 (A/H1N1 swl) segment 7 (MP) 521.9 6.361199e-147 282/282 (100%)
EPI273904 A/Kenya/915/2010 (A/H1N1 swl) segment 7 (MP) 518.2 8.228731e-146 280/280 (100%)
EPI340979 A/Indiana/11/2011 (A/H3N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI339339 A/Volgograd/CRIE-DMV/2011 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338782 A/canine/Beijing/cau2/2009 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338780 A/canine/Beijing/cau9/2009 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338531 A/swine/Iowa/A01049755/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338530 A/swine/Iowa/A01049765/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338529 A/swine/Iowa/A01049766/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338526 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338525 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338524 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338523 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338521 A/swine/Iowa/A01049894/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338518 A/swine/Iowa/A01049949/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338516 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338515 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338497 A/swine/Iowa/A01049478/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338493 A/swine/Illinois/A01049574/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338492 A/swine/Illinois/A01049673/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338488 A/swine/Illinois/A01049575/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338487 A/swine/Illinois/A01049576/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338484 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI338476 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337836 A/swine/Guangdong/297/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337835 A/swine/Guangdong/294/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337834 A/swine/Guangdong/286/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337833 A/swine/Guangdong/278/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337832 A/swine/Guangdong/275/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI337482 A/swine/Minnesota/02979/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336813 A/swine/Quebec/1262080/2010 (A/H3N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336805 A/swine/Quebec/1257774/2010 (A/H3N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336797 A/swine/Quebec/1257777/2010 (A/H3N2) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336782 A/Orenburg/01/2009 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336772 A/Philippines/TMC09-197/2009 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI336754 A/swine/Alberta/25/2009 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335965 A/North Fitzroy/INS463/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335832 A/Tanzania/412/2011 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335805 A/Guangdong-Xiangzhou/1623/2011 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335605 A/Chile/89/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335597 A/Khon Kaen/INS461/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335581 A/Bangkok/INS486/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335428 A/Chile/70/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335415 A/Khon Kaen/INS444/2010 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI335258 A/Tula/CRIE-SIA/2011 (A/H1N1 swl) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)
EPI334606 A/District of Columbia/WRAIR0313/2011 (A/H1N1) segment 7 (MP) 516.3 2.959578e-145 281/282 (99%)

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PostPosted: Tue Nov 01, 2011 7:06 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
CDC has released new trH3N2 sequences (at GISAID) from Indiana (A/Indiana/11/2011) and Maine (A/Maine/07/2011) at GISAID with M gene from H1N1pdm09.

Indiana case is 59M collected Sept 22.

Top 100 HA matches
EPI340984 A/Indiana/11/2011 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%)
EPI339171 A/Maine/06/2011 (A/H3N2) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%)
EPI338561 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 4 (HA) 3088.7 0.000000e+00 1691/1701 (99%)
EPI338562 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%)
EPI338421 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%)
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 3064.7 0.000000e+00 1687/1701 (99%)
EPI335610 A/Pennsylvania/09/2011 (A/H3N2) segment 4 (HA) 3061.0 0.000000e+00 1686/1701 (99%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 3007.5 0.000000e+00 1660/1676 (99%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 2933.6 0.000000e+00 1608/1618 (99%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1658/1703 (97%)
EPI337441 A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA) 2881.9 0.000000e+00 1655/1702 (97%)
EPI314335 A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI103199 A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI103127 A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA) 2865.3 0.000000e+00 1653/1703 (97%)
EPI229372 A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA) 2859.7 0.000000e+00 1652/1703 (97%)
EPI103181 A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1651/1703 (96%)
EPI103145 A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1651/1703 (96%)
EPI101389 A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA) 2854.2 0.000000e+00 1651/1703 (96%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1649/1703 (96%)
EPI158876 A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA) 2843.1 0.000000e+00 1649/1703 (96%)
EPI337384 A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA) 2832.0 0.000000e+00 1647/1703 (96%)
EPI228922 A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1647/1704 (96%)
EPI168645 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1647/1704 (96%)
EPI103217 A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA) 2826.5 0.000000e+00 1647/1704 (96%)
EPI337545 A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1703 (96%)
EPI337349 A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI227574 A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI168650 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1703 (96%)
EPI337401 A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA) 2809.9 0.000000e+00 1644/1704 (96%)
EPI166252 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA) 2808.0 0.000000e+00 1635/1691 (96%)
EPI337529 A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1643/1704 (96%)
EPI225756 A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI128344 A/Ontario/1252/2007 (A/H3N2) segment 4 (HA) 2804.3 0.000000e+00 1642/1703 (96%)
EPI98712 A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA) 2800.6 0.000000e+00 1640/1702 (96%)
EPI337409 A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1642/1704 (96%)
EPI182817 A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA) 2798.8 0.000000e+00 1641/1703 (96%)
EPI222756 A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA) 2793.3 0.000000e+00 1640/1703 (96%)
EPI166255 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA) 2791.4 0.000000e+00 1632/1691 (96%)
EPI166258 A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA) 2789.6 0.000000e+00 1631/1690 (96%)
EPI225758 A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1639/1703 (96%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1639/1703 (96%)
EPI184448 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1640/1704 (96%)
EPI103163 A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA) 2787.7 0.000000e+00 1640/1704 (96%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1638/1703 (96%)
EPI225753 A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1638/1703 (96%)
EPI222959 A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA) 2782.2 0.000000e+00 1639/1704 (96%)
EPI222657 A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1637/1703 (96%)
EPI166278 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA) 2776.6 0.000000e+00 1631/1694 (96%)
EPI222961 A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA) 2771.1 0.000000e+00 1637/1704 (96%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 2767.4 0.000000e+00 1637/1704 (96%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1636/1704 (96%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1636/1704 (96%)
EPI312689 A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA) 2765.6 0.000000e+00 1633/1701 (96%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1635/1704 (95%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 2760.0 0.000000e+00 1633/1702 (95%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1633/1703 (95%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1635/1705 (95%)
EPI182824 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA) 2754.5 0.000000e+00 1634/1704 (95%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1634/1705 (95%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1632/1703 (95%)
EPI222682 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 4 (HA) 2748.9 0.000000e+00 1633/1704 (95%)
EPI338542 A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 2743.4 0.000000e+00 1633/1705 (95%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 2739.7 0.000000e+00 1629/1701 (95%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1631/1704 (95%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1632/1705 (95%)
EPI316991 A/swine/Iowa/A0109035/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI316990 A/swine/Iowa/A0109034/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1628/1701 (95%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 2737.9 0.000000e+00 1629/1702 (95%)
EPI336800 A/swine/Quebec/1257777/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1624/1695 (95%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 2732.3 0.000000e+00 1630/1704 (95%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1704 (95%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1628/1703 (95%)
EPI307943 A/swine/Iowa/A01057188/2010 (A/H3N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1704 (95%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1704 (95%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1704 (95%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1704 (95%)
EPI25393 A/turkey/ Minnesota/764-2/03 (A/H3N2) segment 4 (HA) 2721.2 0.000000e+00 1629/1705 (95%)
EPI338543 A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1627/1704 (95%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1626/1703 (95%)
EPI230035 A/swine/Wisconsin/R7c/2001 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1627/1704 (95%)
EPI25391 A/turkey/North Carolina/12344/03 (A/H3N2) segment 4 (HA) 2715.7 0.000000e+00 1628/1705 (95%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 2710.2 0.000000e+00 1624/1702 (95%)
EPI219360 A/swine/Kansas/015252/2009 (A/H3N2) segment 4 (HA) 2710.2 0.000000e+00 1625/1703 (95%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 2700.9 0.000000e+00 1626/1706 (95%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 2699.1 0.000000e+00 1625/1705 (95%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 2693.5 0.000000e+00 1624/1705 (95%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 2689.8 0.000000e+00 1624/1706 (95%)
EPI314515 A/quail/QC/FAV-10/2008 (A/H3N2) segment 4 (HA) 2688.0 0.000000e+00 1620/1702 (95%)

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PostPosted: Tue Nov 01, 2011 7:08 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 NA matches

EPI340983 A/Indiana/11/2011 (A/H3N2) segment 6 (NA) 2545.8 0.000000e+00 1378/1378 (100%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2540.3 0.000000e+00 1377/1378 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%)
EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2529.2 0.000000e+00 1375/1378 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI335620 A/Pennsylvania/11/2011 (A/H3N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI335631 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2514.4 0.000000e+00 1372/1378 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2512.6 0.000000e+00 1372/1378 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2512.6 0.000000e+00 1372/1378 (99%)
EPI317022 A/swine/Iowa/A0109071/2010 (A/H1N2) segment 6 (NA) 2512.6 0.000000e+00 1372/1378 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2512.6 0.000000e+00 1372/1378 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2512.6 0.000000e+00 1372/1378 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338442 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI338441 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI324820 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI314800 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI307830 A/swine/South Dakota/4/2010 (A/H1N2) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%)
EPI339170 A/Maine/06/2011 (A/H3N2) segment 6 (NA) 2501.5 0.000000e+00 1370/1378 (99%)
EPI338586 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA) 2501.5 0.000000e+00 1370/1378 (99%)
EPI338568 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA) 2501.5 0.000000e+00 1370/1378 (99%)
EPI338190 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 6 (NA) 2495.9 0.000000e+00 1369/1378 (99%)
EPI335612 A/Pennsylvania/09/2011 (A/H3N2) segment 6 (NA) 2495.9 0.000000e+00 1369/1378 (99%)
EPI338584 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA) 2490.4 0.000000e+00 1366/1375 (99%)
EPI338571 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 6 (NA) 2490.4 0.000000e+00 1368/1378 (99%)
EPI338570 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%)
EPI338566 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%)
EPI338565 A/swine/Illinois/A01049968/2011 (A/H1N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%)
EPI338564 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%)
EPI338585 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 6 (NA) 2468.2 0.000000e+00 1362/1375 (99%)
EPI220781 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 6 (NA) 2429.5 0.000000e+00 1357/1378 (98%)
EPI220885 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220877 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220869 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220837 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220821 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220813 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220805 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 6 (NA) 2423.9 0.000000e+00 1356/1378 (98%)
EPI220797 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 6 (NA) 2418.4 0.000000e+00 1355/1378 (98%)
EPI220773 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 6 (NA) 2418.4 0.000000e+00 1355/1378 (98%)
EPI292300 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%)
EPI220934 A/swine/Texas/050625/2008 (A/H1N2) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%)
EPI220893 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%)
EPI220861 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 6 (NA) 2412.8 0.000000e+00 1355/1379 (98%)
EPI220789 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%)
EPI220926 A/swine/Texas/050593/2008 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1353/1378 (98%)
EPI220853 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1353/1378 (98%)
EPI220845 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1353/1378 (98%)
EPI220829 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1353/1378 (98%)
EPI220909 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1352/1379 (98%)
EPI220901 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1347/1378 (97%)
EPI312699 A/swine/Minnesota/239106/2010 (A/H1N2) segment 6 (NA) 2368.5 0.000000e+00 1346/1378 (97%)
EPI219362 A/swine/Kansas/015252/2009 (A/H3N2) segment 6 (NA) 2368.5 0.000000e+00 1346/1378 (97%)
EPI219370 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 6 (NA) 2363.0 0.000000e+00 1345/1378 (97%)
EPI315843 A/swine/South Dakota/5/2011 (A/H1N2) segment 6 (NA) 2340.8 0.000000e+00 1341/1378 (97%)
EPI315846 A/swine/South Dakota/6/2011 (A/H1N2) segment 6 (NA) 2329.7 0.000000e+00 1339/1378 (97%)
EPI338576 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 6 (NA) 2320.5 0.000000e+00 1337/1378 (97%)
EPI292291 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 6 (NA) 2307.6 0.000000e+00 1336/1379 (96%)
EPI337507 A/swine/Minnesota/02324/2008 (A/H1N2) segment 6 (NA) 2296.5 0.000000e+00 1333/1378 (96%)
EPI337475 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 6 (NA) 2291.0 0.000000e+00 1332/1378 (96%)
EPI229374 A/turkey/OH/313053/2004 (A/H3N2) segment 6 (NA) 2285.4 0.000000e+00 1331/1378 (96%)
EPI101393 A/turkey/Ohio/313053/04 (A/H3N2) segment 6 (NA) 2285.4 0.000000e+00 1331/1378 (96%)
EPI337343 A/swine/Iowa/01700/2007 (A/H3N2) segment 6 (NA) 2274.3 0.000000e+00 1329/1378 (96%)
EPI235273 A/swine/North Carolina/2003 (A/H3N2) segment 6 (NA) 2268.8 0.000000e+00 1329/1379 (96%)
EPI228924 A/turkey/Illinois/2004 (A/H3N2) segment 6 (NA) 2268.8 0.000000e+00 1329/1379 (96%)
EPI227576 A/turkey/NC/353568/2005 (A/H3N2) segment 6 (NA) 2268.8 0.000000e+00 1329/1379 (96%)
EPI103158 A/swine/British Columbia/28103/2005 (A/H3N2) segment 6 (NA) 2268.8 0.000000e+00 1328/1378 (96%)
EPI337547 A/swine/Minnesota/00484/2005 (A/H3N2) segment 6 (NA) 2263.3 0.000000e+00 1327/1378 (96%)
EPI337443 A/swine/Minnesota/00611/2005 (A/H3N2) segment 6 (NA) 2263.3 0.000000e+00 1327/1378 (96%)
EPI337386 A/swine/Nebraska/00722/2005 (A/H0) segment 6 (NA) 2263.3 0.000000e+00 1327/1378 (96%)
EPI168652 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 6 (NA) 2263.3 0.000000e+00 1328/1379 (96%)
EPI337952 A/swine/Illinois/02450/2008 (A/H0) segment 6 (NA) 2257.7 0.000000e+00 1326/1378 (96%)
EPI182818 A/swine/Quebec/4001/2005 (A/H3N2) segment 6 (NA) 2257.7 0.000000e+00 1326/1378 (96%)
EPI314333 A/turkey/BC/1529-3/2005 (A/H3N2) segment 6 (NA) 2252.2 0.000000e+00 1326/1379 (96%)
EPI103194 A/swine/Ontario/33853/2005 (A/H3N2) segment 6 (NA) 2252.2 0.000000e+00 1325/1378 (96%)
EPI103176 A/swine/Manitoba/12707/2005 (A/H3N2) segment 6 (NA) 2252.2 0.000000e+00 1325/1378 (96%)
EPI103122 A/Ontario/RV1273/2005 (A/H3N2) segment 6 (NA) 2252.2 0.000000e+00 1325/1378 (96%)
EPI337364 A/swine/Minnesota/00709/2005 (A/H3N2) segment 6 (NA) 2246.6 0.000000e+00 1324/1378 (96%)
EPI103212 A/turkey/Ontario/31232/2005 (A/H3N2) segment 6 (NA) 2246.6 0.000000e+00 1325/1379 (96%)

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PostPosted: Tue Nov 01, 2011 7:09 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 PB2 matches

EPI340981 A/Indiana/11/2011 (A/H3N2) segment 1 (PB2) 4176.4 0.000000e+00 2261/2261 (100%)
EPI333194 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4126.5 0.000000e+00 2252/2261 (99%)
EPI335607 A/Pennsylvania/09/2011 (A/H3N2) segment 1 (PB2) 4117.3 0.000000e+00 2250/2261 (99%)
EPI335626 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4115.5 0.000000e+00 2246/2255 (99%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 4076.7 0.000000e+00 2243/2261 (99%)
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 4076.7 0.000000e+00 2243/2261 (99%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2242/2261 (99%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2242/2261 (99%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2242/2261 (99%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 4069.3 0.000000e+00 2239/2257 (99%)
EPI312977 A/Pennsylvania/40/2010 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2241/2261 (99%)
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2241/2261 (99%)
EPI314788 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 1 (PB2) 4054.5 0.000000e+00 2239/2261 (99%)
EPI293962 A/Minnesota/11/2010 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2239/2262 (98%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2235/2261 (98%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 3988.0 0.000000e+00 2225/2258 (98%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 3988.0 0.000000e+00 2225/2258 (98%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 3982.5 0.000000e+00 2224/2258 (98%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 3982.5 0.000000e+00 2224/2258 (98%)
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 3982.5 0.000000e+00 2224/2258 (98%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 3973.3 0.000000e+00 2222/2258 (98%)
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 3967.7 0.000000e+00 2212/2244 (98%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3960.3 0.000000e+00 2220/2258 (98%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 3960.3 0.000000e+00 2220/2258 (98%)
EPI337408 A/swine/Minnesota/02782/2009 (A/H3N2) segment 1 (PB2) 3954.8 0.000000e+00 2219/2258 (98%)
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3949.3 0.000000e+00 2218/2258 (98%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3943.7 0.000000e+00 2217/2258 (98%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3943.7 0.000000e+00 2219/2261 (98%)
EPI307926 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 1 (PB2) 3943.7 0.000000e+00 2219/2261 (98%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3932.6 0.000000e+00 2215/2258 (98%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3932.6 0.000000e+00 2215/2258 (98%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3927.1 0.000000e+00 2214/2258 (98%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3916.0 0.000000e+00 2212/2258 (97%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3916.0 0.000000e+00 2212/2258 (97%)
EPI295332 A/swine/South Dakota/152B/2009 (A/H1N2) segment 1 (PB2) 3910.5 0.000000e+00 2211/2258 (97%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3904.9 0.000000e+00 2210/2258 (97%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3899.4 0.000000e+00 2209/2258 (97%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3899.4 0.000000e+00 2209/2258 (97%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3899.4 0.000000e+00 2209/2258 (97%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3899.4 0.000000e+00 2209/2258 (97%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3893.9 0.000000e+00 2208/2258 (97%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%)
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 3882.8 0.000000e+00 2207/2259 (97%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3882.8 0.000000e+00 2205/2258 (97%)
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 3877.2 0.000000e+00 2205/2258 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3877.2 0.000000e+00 2205/2258 (97%)
EPI337608 A/swine/Illinois/02510/2009 (A/H1N1) segment 1 (PB2) 3866.2 0.000000e+00 2203/2258 (97%)
EPI337576 A/swine/Illinois/02695/2009 (A/H1N1) segment 1 (PB2) 3866.2 0.000000e+00 2203/2258 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3866.2 0.000000e+00 2203/2258 (97%)
EPI337584 A/swine/Illinois/02385/2008 (A/H1N1) segment 1 (PB2) 3860.6 0.000000e+00 2202/2258 (97%)
EPI337544 A/swine/Minnesota/02475/2008 (A/H1N1) segment 1 (PB2) 3860.6 0.000000e+00 2202/2258 (97%)
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 3860.6 0.000000e+00 2174/2216 (98%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3860.6 0.000000e+00 2202/2258 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3855.1 0.000000e+00 2201/2258 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2202/2259 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2201/2258 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2201/2258 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2201/2258 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3855.1 0.000000e+00 2201/2258 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3849.5 0.000000e+00 2201/2259 (97%)
EPI337369 A/swine/Minnesota/00709/2005 (A/H3N2) segment 1 (PB2) 3844.0 0.000000e+00 2199/2258 (97%)
EPI337552 A/swine/Minnesota/00484/2005 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2198/2258 (97%)
EPI337355 A/swine/Minnesota/01146/2006 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2198/2258 (97%)
EPI228919 A/turkey/Illinois/2004 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2198/2258 (97%)
EPI182823 A/swine/Quebec/4001/2005 (A/H3N2) segment 1 (PB2) 3838.5 0.000000e+00 2198/2258 (97%)
EPI103165 A/swine/Manitoba/12707/2005 (A/H3N2) segment 1 (PB2) 3827.4 0.000000e+00 2197/2259 (97%)
EPI312654 A/swine/North Carolina/226124/2010 (A/H1N2) segment 1 (PB2) 3821.8 0.000000e+00 2195/2258 (97%)
EPI222649 A/swine/Minnesota/1145/2007 (A/H3N2) segment 1 (PB2) 3821.8 0.000000e+00 2197/2261 (97%)
EPI166250 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 1 (PB2) 3821.8 0.000000e+00 2185/2243 (97%)
EPI312670 A/swine/North Carolina/226126/2010 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2194/2258 (97%)
EPI312662 A/swine/North Carolina/226125/2010 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2194/2258 (97%)
EPI291794 A/Iowa/01/2006 (A/H1N1) segment 1 (PB2) 3816.3 0.000000e+00 2194/2258 (97%)
EPI281298 A/swine/Texas/01976/2008 (A/H1N2) segment 1 (PB2) 3816.3 0.000000e+00 2194/2258 (97%)
EPI323283 A/swine/Minnesota/7931/2007 (A/H3N2) segment 1 (PB2) 3810.8 0.000000e+00 2193/2258 (97%)
EPI312702 A/swine/North Carolina/239108/2010 (A/H1N2) segment 1 (PB2) 3810.8 0.000000e+00 2193/2258 (97%)
EPI291853 A/Missouri/04/2006 (A/H1N1) segment 1 (PB2) 3810.8 0.000000e+00 2194/2259 (97%)
EPI222679 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 1 (PB2) 3805.2 0.000000e+00 2192/2258 (97%)
EPI220913 A/swine/Texas/008648/2008 (A/H1N2) segment 1 (PB2) 3805.2 0.000000e+00 2192/2258 (97%)
EPI153513 A/swine/Ohio/C62006/06 (A/H1N1) segment 1 (PB2) 3805.2 0.000000e+00 2193/2259 (97%)
EPI166253 A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 1 (PB2) 3803.4 0.000000e+00 2183/2245 (97%)
EPI337504 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 1 (PB2) 3799.7 0.000000e+00 2192/2259 (97%)
EPI179351 A/swine/IL/07003243/2007 (A/H1N2) segment 1 (PB2) 3799.7 0.000000e+00 2191/2258 (97%)
EPI324032 A/swine/QC/1695-3/2009 (A/H1N1) segment 1 (PB2) 3794.1 0.000000e+00 2190/2258 (96%)
EPI220808 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 1 (PB2) 3794.1 0.000000e+00 2190/2258 (96%)
EPI220800 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 1 (PB2) 3794.1 0.000000e+00 2190/2258 (96%)
EPI337528 A/swine/Minnesota/001581/2007 (A/H1N1) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI337480 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI220832 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI220824 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI220816 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI220784 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 1 (PB2) 3788.6 0.000000e+00 2189/2258 (96%)
EPI337520 A/swine/Minnesota/001444/2007 (A/H3N2) segment 1 (PB2) 3783.1 0.000000e+00 2188/2258 (96%)
EPI324015 A/swine/QC/1531-3/2009 (A/H1N1) segment 1 (PB2) 3783.1 0.000000e+00 2188/2258 (96%)
EPI220864 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 1 (PB2) 3783.1 0.000000e+00 2188/2258 (96%)
EPI220856 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 1 (PB2) 3783.1 0.000000e+00 2188/2258 (96%)

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PostPosted: Tue Nov 01, 2011 7:11 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 PB1 matches

EPI340982 A/Indiana/11/2011 (A/H3N2) segment 2 (PB1) 4193.0 0.000000e+00 2270/2270 (100%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4170.9 0.000000e+00 2266/2270 (99%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4170.9 0.000000e+00 2266/2270 (99%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 4165.3 0.000000e+00 2265/2270 (99%)
EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 4026.8 0.000000e+00 2240/2270 (98%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 4004.7 0.000000e+00 2236/2270 (98%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 4004.7 0.000000e+00 2236/2270 (98%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 4004.7 0.000000e+00 2236/2270 (98%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 4004.7 0.000000e+00 2236/2270 (98%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 4004.7 0.000000e+00 2236/2270 (98%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2227/2262 (98%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3982.5 0.000000e+00 2232/2270 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3982.5 0.000000e+00 2232/2270 (98%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3971.4 0.000000e+00 2230/2270 (98%)
EPI295333 A/swine/South Dakota/152B/2009 (A/H1N2) segment 2 (PB1) 3965.9 0.000000e+00 2229/2270 (98%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3960.3 0.000000e+00 2226/2267 (98%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3949.3 0.000000e+00 2226/2270 (98%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3938.2 0.000000e+00 2222/2267 (98%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3932.6 0.000000e+00 2223/2270 (97%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3932.6 0.000000e+00 2223/2270 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 3927.1 0.000000e+00 2222/2270 (97%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 3927.1 0.000000e+00 2222/2270 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 3927.1 0.000000e+00 2222/2270 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3927.1 0.000000e+00 2222/2270 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 3927.1 0.000000e+00 2222/2270 (97%)
EPI293963 A/Minnesota/11/2010 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2219/2270 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 3916.0 0.000000e+00 2220/2270 (97%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 3916.0 0.000000e+00 2220/2270 (97%)
EPI312979 A/Pennsylvania/40/2010 (A/H3N2) segment 2 (PB1) 3910.5 0.000000e+00 2219/2270 (97%)
EPI291895 A/Wisconsin/12/2010 (A/H3N2) segment 2 (PB1) 3910.5 0.000000e+00 2219/2270 (97%)
EPI291867 A/Pennsylvania/14/2010 (A/H3N2) segment 2 (PB1) 3910.5 0.000000e+00 2219/2270 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3904.9 0.000000e+00 2219/2271 (97%)
EPI337559 A/swine/Illinois/02251/2008 (A/H1N1) segment 2 (PB1) 3904.9 0.000000e+00 2219/2271 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3904.9 0.000000e+00 2218/2270 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3904.9 0.000000e+00 2218/2270 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3904.9 0.000000e+00 2219/2271 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3904.9 0.000000e+00 2219/2271 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3899.4 0.000000e+00 2217/2270 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3899.4 0.000000e+00 2217/2270 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3899.4 0.000000e+00 2218/2271 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3899.4 0.000000e+00 2217/2270 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3897.6 0.000000e+00 2216/2269 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3893.9 0.000000e+00 2217/2271 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2216/2271 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3888.3 0.000000e+00 2215/2270 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3888.3 0.000000e+00 2216/2271 (97%)
EPI302680 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 2 (PB1) 3888.3 0.000000e+00 2215/2270 (97%)
EPI188120 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 2 (PB1) 3888.3 0.000000e+00 2202/2251 (97%)
EPI337607 A/swine/Illinois/02510/2009 (A/H1N1) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%)
EPI337583 A/swine/Illinois/02385/2008 (A/H1N1) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%)
EPI337575 A/swine/Illinois/02695/2009 (A/H1N1) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%)
EPI302668 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 2 (PB1) 3877.2 0.000000e+00 2213/2270 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3869.9 0.000000e+00 2208/2264 (97%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3866.2 0.000000e+00 2212/2271 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3866.2 0.000000e+00 2212/2271 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3866.2 0.000000e+00 2212/2271 (97%)
EPI281295 A/swine/Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3864.3 0.000000e+00 2212/2270 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3862.5 0.000000e+00 2211/2271 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3860.6 0.000000e+00 2212/2272 (97%)
EPI222680 A/swine/Oklahoma/011506/2007 (A/H3N2) segment 2 (PB1) 3855.1 0.000000e+00 2209/2270 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3855.1 0.000000e+00 2210/2271 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3849.5 0.000000e+00 2210/2272 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3849.5 0.000000e+00 2209/2271 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3849.5 0.000000e+00 2209/2271 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3849.5 0.000000e+00 2210/2272 (97%)
EPI103203 A/turkey/Ontario/31232/2005 (A/H3N2) segment 2 (PB1) 3849.5 0.000000e+00 2209/2271 (97%)
EPI98724 A/swine/IN/PU542/04 (A/H3N1) segment 2 (PB1) 3849.5 0.000000e+00 2208/2270 (97%)
EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3844.0 0.000000e+00 2208/2271 (97%)
EPI337519 A/swine/Minnesota/001444/2007 (A/H3N2) segment 2 (PB1) 3842.2 0.000000e+00 2204/2266 (97%)
EPI337527 A/swine/Minnesota/001581/2007 (A/H1N1) segment 2 (PB1) 3838.5 0.000000e+00 2206/2270 (97%)
EPI337381 A/swine/Minnesota/001200/2006 (A/H1N1) segment 2 (PB1) 3838.5 0.000000e+00 2207/2271 (97%)
EPI289640 A/swine/Minnesota/65767/2006 (A/H3N2) segment 2 (PB1) 3838.5 0.000000e+00 2206/2270 (97%)
EPI166260 A/swine/Minnesota/SG-00237/2007 (A/H3N2) segment 2 (PB1) 3836.6 0.000000e+00 2199/2260 (97%)
EPI281288 A/swine/Nebraska/02013/2008 (A/H1N1) segment 2 (PB1) 3832.9 0.000000e+00 2205/2269 (97%)
EPI177841 A/swine/Minnesota/1900/2007 (A/H1N2) segment 2 (PB1) 3832.9 0.000000e+00 2207/2272 (97%)
EPI177838 A/swine/Minnesota/7931/2007 (A/H3N2) segment 2 (PB1) 3832.9 0.000000e+00 2206/2271 (97%)
EPI291901 A/Wisconsin/87/2005 (A/H1N1) segment 2 (PB1) 3827.4 0.000000e+00 2204/2270 (97%)
EPI222672 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 2 (PB1) 3827.4 0.000000e+00 2206/2272 (97%)
EPI185086 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 2 (PB1) 3827.4 0.000000e+00 2207/2273 (97%)
EPI177849 A/swine/Minnesota/69353/2006 (A/H1N1) segment 2 (PB1) 3827.4 0.000000e+00 2205/2271 (97%)
EPI177844 A/swine/Minnesota/3239/2007 (A/H1N2) segment 2 (PB1) 3827.4 0.000000e+00 2206/2272 (97%)
EPI291887 A/Texas/14/2008 (A/H1N1) segment 2 (PB1) 3825.5 0.000000e+00 2206/2272 (97%)
EPI182829 A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 2 (PB1) 3821.8 0.000000e+00 2205/2272 (97%)
EPI179352 A/swine/IL/07003243/2007 (A/H1N2) segment 2 (PB1) 3821.8 0.000000e+00 2205/2272 (97%)
EPI177843 A/swine/Minnesota/2728/2007 (A/H1N2) segment 2 (PB1) 3821.8 0.000000e+00 2203/2270 (97%)
EPI177840 A/swine/Minnesota/66743/2006 (A/H1N2) segment 2 (PB1) 3821.8 0.000000e+00 2204/2271 (97%)
EPI166270 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 2 (PB1) 3821.8 0.000000e+00 2197/2261 (97%)
EPI337423 A/swine/Minnesota/02053/2008 (A/H1N1) segment 2 (PB1) 3816.3 0.000000e+00 2203/2271 (97%)
EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 3816.3 0.000000e+00 2202/2270 (97%)
EPI166264 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 2 (PB1) 3816.3 0.000000e+00 2197/2263 (97%)
EPI337340 A/swine/Kentucky/SG1118/2003 (A/H0) segment 2 (PB1) 3810.8 0.000000e+00 2203/2272 (96%)
EPI281292 A/swine/Minnesota/02011/2008 (A/H1N2) segment 2 (PB1) 3810.8 0.000000e+00 2201/2269 (97%)
EPI337407 A/swine/Minnesota/02782/2009 (A/H3N2) segment 2 (PB1) 3805.2 0.000000e+00 2202/2272 (96%)
EPI314689 A/swine/QC/1840-2/2009 (A/H3N2) segment 2 (PB1) 3805.2 0.000000e+00 2201/2271 (96%)
EPI302673 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 2 (PB1) 3805.2 0.000000e+00 2200/2270 (96%)
EPI291848 A/Minnesota/10/2009 (A/H1N1) segment 2 (PB1) 3805.2 0.000000e+00 2202/2272 (96%)
EPI255752 A/swine/MN/23506/2009 (A/H1N1) segment 2 (PB1) 3805.2 0.000000e+00 2202/2272 (96%)

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