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PostPosted: Mon Sep 05, 2011 7:52 am 
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CDC has added an unsubtypable to FluView this weekend

http://www.recombinomics.com/News/09051 ... pable.html

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PostPosted: Mon Sep 05, 2011 7:53 am 
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niman wrote:
CDC has added an unsubtypable to FluView this weekend

http://www.recombinomics.com/News/09051 ... pable.html

New thread started to discuss unsubtypable

viewtopic.php?f=5&t=7461

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PostPosted: Mon Sep 05, 2011 9:29 am 
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Commentary on evolution of 2011 swine trH3N2 pandemic

http://www.recombinomics.com/News/09051 ... ution.html

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PostPosted: Mon Sep 05, 2011 10:23 am 
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niman wrote:
Commentary on evolution of 2011 swine trH3N2 pandemic

http://www.recombinomics.com/News/09051 ... ution.html

December 2010 commentary on the emerging swine trH3n2 pandemic

http://www.recombinomics.com/News/12171 ... demic.html

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PostPosted: Mon Sep 05, 2011 10:38 am 
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H3N2 pandemic updates are popular at NewsNow (largest news aggregator in the UK)

http://www.newsnow.co.uk/h/Hot+Topics/F ... TSPeriod=0

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PostPosted: Mon Sep 05, 2011 11:43 am 
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Note that all public human trH3N2 sequences from the US have D225G

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI324852 A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI324849 A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318672 A/Georgia/NHRC0001/2002 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318664 A/Texas/NHRC0001/2002 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318656 A/Missouri/NHRC0001/2002 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318480 A/Illinois/NHRC0001/2002 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318472 A/Missouri/NHRC0001/2000 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318464 A/South Carolina/NHRC0001/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318456 A/Illinois/NHRC0001/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318448 A/Georgia/NHRC0001/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318101 A/swine/Iowa/A01049160/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318097 A/swine/Indiana/A01049124/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI316989 A/swine/Iowa/A0109032/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI316988 A/swine/Iowa/A0109031/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314887 A/Scotland/262/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314886 A/Scotland/230/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314885 A/Scotland/211/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314877 A/Scotland/89/1997 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314871 A/Scotland/31/1997 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314865 A/Scotland/38/1996 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314796 A/swine/Pennsylvania/602170-4/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314795 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314695 A/swine/QC/440-A/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314687 A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314679 A/swine/QC/414/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314668 A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314667 A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314666 A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314665 A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314664 A/swine/QC/1685-5/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314663 A/swine/QC/1685-1/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314643 A/swine/QC/382/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314635 A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314515 A/quail/QC/FAV-10/2008 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314161 A/swine/Quebec/1265553/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI314152 A/swine/Quebec/1259260/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI309154 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI309153 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI307945 A/swine/Illinois/A01057088/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI307944 A/swine/Illinois/A01057087/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI307929 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302664 A/swine/Illinois/53612-7/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302659 A/swine/Illinois/53612-6/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302658 A/swine/Illinois/53612-5/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302653 A/swine/Illinois/53612-4/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302652 A/swine/Illinois/53612-3/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302647 A/swine/Illinois/53612-2/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI302646 A/swine/Illinois/53612-1/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI297826 A/Netherlands/301/1999 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI297513 A/Shiraz/36/2008 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI292016 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI292013 A/swine/Iowa/H03HB4/2003 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI292011 A/swine/Iowa/H03LDH5/2003 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291872 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291870 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291865 A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI291813 A/Iowa/16/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI289638 A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI283583 A/Oklahoma/5098/1996 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI281212 A/swine/Illinois/03041/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI281211 A/swine/Illinois/03040/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI273578 A/swine/Nagano/2000 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI269537 A/swine/Iowa/03017/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254270 A/Jochiwon/04/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254149 A/Daegu/58/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254117 A/Busan/71/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254116 A/Busan/44/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254115 A/Busan/16/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI254114 A/Busan/11/2001 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI249522 A/swine/Minnesota/02981/2010 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI246027 A/swine/Minnesota/02952/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI246023 A/swine/Minnesota/02948/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)
EPI244297 A/Kansas/13/2009 (A/H3N2) segment 4 (HA) 36.2 1.155143e-02 19/19 (100%)

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PostPosted: Mon Sep 05, 2011 6:13 pm 
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WTAE picture of Washington County Fair
Image

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PostPosted: Tue Sep 06, 2011 5:57 am 
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Cases discussed here

http://rense.gsradio.net:8080/rense/spe ... 090511.mp3

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PostPosted: Tue Sep 06, 2011 11:49 am 
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niman wrote:
Novel H3N2 swine flu viruses infected 2 children, CDC says
Robert Roos News Editor

"I don't think these [viruses] have pandemic potential; it looks like both of these are sort of dead-end transmissions," Lyn Finelli, DrPH, chief of the surveillance and outbreak response team in the CDC's influenza division, told CIDRAP News.

http://www.cidrap.umn.edu/cidrap/conten ... swine.html

lala land

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PostPosted: Mon Sep 12, 2011 6:29 am 
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Commentary

http://www.recombinomics.com/News/09121 ... M_Seq.html

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