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niman
PostPosted: Sat Aug 27, 2011 8:28 am 
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Location: Pittsburgh, PA USA
No CDC update

http://www.cdc.gov/flu/swineflu/soiv_cases.htm

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niman
PostPosted: Sat Aug 27, 2011 9:33 am 
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Posts: 27279
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/08271 ... N1_MP.html

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niman
PostPosted: Sat Aug 27, 2011 11:18 am 
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Posts: 27279
Location: Pittsburgh, PA USA
C397A

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI180080 A/swine/Iowa/63607-19/2008 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI3785 A/New_York/9/96 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 11:24 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
T447C
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324851 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324844 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI318106 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI318095 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317007 A/swine/Iowa/A0109112/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI259504 A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI246027 A/swine/Minnesota/02952/2009 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI246023 A/swine/Minnesota/02948/2009 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI244116 A/swine/Illinois/02940/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI222674 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 11:26 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
T462C

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI332914 A/equine/Tokyo/2/1971 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI321739 A/equine/Zagreb/1/1968 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI246023 A/swine/Minnesota/02948/2009 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242925 A/equine (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242371 A/equine/Tokyo/1971 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242360 A/equine/New Market/1976 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242359 A/equine/Miami/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242353 A/equine/Kascakew/1/1978 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242348 A/equine/Fontainebleau/1976 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242347 A/equine/Algiers/1972 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242345 A/equi 2/Solvalla /79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240796 A/Sweden/SOL/79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240127 A/equine/Romania/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240105 A/equi 2/Aby/84 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI165401 A/equine/Sachiyama/1/1971 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI159280 A/equine/France/1/1967 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI159272 A/equine/Switzerland/2225/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI156249 A/equine/Algiers/1/1972 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI156241 A/equine/Kentucky/2/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154026 A/equine/Uruguay/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154010 A/equine/Fontainbleu/1/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154002 A/equine/Sao Paulo/1/1969 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153994 A/equine/Romania/1/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153986 A/equine/Switzerland/1118/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153914 A/equine/Sao Paulo/6/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI133332 A/equine/New York/1/1983 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI133047 A/equine/California/83/1982 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI130345 A/equine/France/1/1976 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI129722 A/equine/Miami/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI129720 A/equine/Uruguay/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI80608 A/equine/NewMarket/D64/79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77995 A/equine/New York/VR-297/1983 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77976 A/equine/California/103/1982 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77938 A/equine/Georgia/13/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77919 A/equine/Georgia/10/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77900 A/equine/Georgia/9/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77881 A/equine/Georgia/3/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77862 A/equine/Georgia/1/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77805 A/equine/Miami/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77748 A/equine/California/1/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77729 A/equine/Kentucky/4/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77710 A/equine/Kentucky/1/1978 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 11:50 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
A473G
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI246023 A/swine/Minnesota/02948/2009 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242925 A/equine (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242359 A/equine/Miami/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242353 A/equine/Kascakew/1/1978 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242348 A/equine/Fontainebleau/1976 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI242345 A/equi 2/Solvalla /79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240796 A/Sweden/SOL/79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240127 A/equine/Romania/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240110 A/equine/Kentucky/1/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI240105 A/equi 2/Aby/84 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI222910 A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI184611 A/psittacine/Italy/2873/2000 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI159280 A/equine/France/1/1967 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI159272 A/equine/Switzerland/2225/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI156241 A/equine/Kentucky/2/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154026 A/equine/Uruguay/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154010 A/equine/Fontainbleu/1/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI154002 A/equine/Sao Paulo/1/1969 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153994 A/equine/Romania/1/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153986 A/equine/Switzerland/1118/1979 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI153914 A/equine/Sao Paulo/6/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI133332 A/equine/New York/1/1983 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI133047 A/equine/California/83/1982 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI133028 A/equine/Kentucky/3/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI130955 A/equine/Kentucky/1/81 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI130345 A/equine/France/1/1976 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI129722 A/equine/Miami/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI129720 A/equine/Uruguay/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI80608 A/equine/NewMarket/D64/79 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77995 A/equine/New York/VR-297/1983 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77976 A/equine/California/103/1982 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77938 A/equine/Georgia/13/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77919 A/equine/Georgia/10/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77900 A/equine/Georgia/9/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77881 A/equine/Georgia/3/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77862 A/equine/Georgia/1/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77805 A/equine/Miami/1/1963 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77767 A/equine/Kentucky/2/1981 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77748 A/equine/California/1/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77729 A/equine/Kentucky/4/1980 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI77710 A/equine/Kentucky/1/1978 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI13281 A/pet bird/China/R7/04 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI13277 A/finch/China/R170/02 (A/H3N8) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 11:57 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
A528G
EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291838 A/Minnesota/09/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 12:17 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27279
Location: Pittsburgh, PA USA
C866A, G872A, C873T, A874G, C876A

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

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niman
PostPosted: Sat Aug 27, 2011 2:48 pm 
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niman wrote:
The CDC has released the full sequence (at GISAID) from a trH3N2 from Indiana, A/Indiana/08/2011, collected July 24, 2011.

The collection data for this isolate suggests it was the case reported in week 30 (August 5, 2011).

http://www.cdc.gov/mmwr/preview/mmwrhtm ... mm6030md_w

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niman
PostPosted: Sun Aug 28, 2011 12:21 pm 
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niman wrote:
C866A, G872A, C873T, A874G, C876A

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 27.0 6.922895e+00 14/14 (100%)

G855A is also shared by the above isolates

EPI333152 A/Indiana/08/2011 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI328900 A/Minnesota/11/2010 X-203A (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI328898 A/Minnesota/11/2010 X-203 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI324857 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI317003 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI312980 A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI293965 A/Minnesota/11/2010 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI291898 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%)
EPI291893 A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA) 41.7 2.458736e-04 22/22 (100%

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