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niman
PostPosted: Fri Aug 26, 2011 4:55 pm 
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Location: Pittsburgh, PA USA
http://www.recombinomics.com/News/08261 ... ralia.html

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niman
PostPosted: Mon Sep 05, 2011 10:14 pm 
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Posts: 27289
Location: Pittsburgh, PA USA
Newcastle sequence, A/NEWCASTLE/2/2011, with H274Y released by WHO regional center in Austalia at GISAID.

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niman
PostPosted: Mon Sep 05, 2011 10:15 pm 
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Location: Pittsburgh, PA USA
niman wrote:
Newcastle sequence, A/NEWCASTLE/2/2011, with H274Y released by WHO regional center in Austalia at GISAID.

S188T subclade

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niman
PostPosted: Mon Sep 05, 2011 10:16 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27289
Location: Pittsburgh, PA USA
Top 100 HA matches

EPI334772 A/NEWCASTLE/2/2011 (A/H1N1 swl) segment 4 (HA) 3136.7 0.000000e+00 1698/1698 (100%)
EPI331207 A/Hong Kong/3973/2011 (A/H1N1 swl) segment 4 (HA) 3120.1 0.000000e+00 1695/1698 (99%)
EPI332333 A/Bangkok/INS477/2010 (A/H1N1) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI332317 A/Bangkok/INS479/2010 (A/H1N1) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313320 A/Tehran/5963/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313318 A/Tehran/5958/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313284 A/Karaj/6072/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313282 A/Karaj/5987/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313280 A/Karaj/5985/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313201 A/Ghom/215/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI301435 A/Tehran/5652/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI298421 A/Karaj/5327/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI332717 A/Phiippines/TMC11-9/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332253 A/Bangkok/INS492/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332173 A/Bangkok/INS504/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332069 A/Khon Kaen/INS523/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330324 A/Gansu-Chengguan/SWL579/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330284 A/Jiangsu-Xinpu/SWL187/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330076 A/Hunan-Furong/SWL410/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI324430 A/Sydney/DD3-58/2011 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI316000 A/Thailand/CU-H2358/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315886 A/Thailand/CU-H2911/2011 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315878 A/Thailand/CU-H2698/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315862 A/Thailand/CU-B4339/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315730 A/Thailand/CU-H2543/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313286 A/Karaj/6076/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313278 A/Karaj/5924/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313276 A/Karaj/5921/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313272 A/Karaj/5607/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI304607 A/Tehran/5675/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI302345 A/BRUNEI/237/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI301437 A/Tehran/5858/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI331608 A/PHILIPPINES/1343/2011 (A/H1N1 swl) segment 4 (HA) 3099.8 0.000000e+00 1691/1698 (99%)
EPI301722 A/California/23/2010 (A/H1N1 swl) segment 4 (HA) 3099.8 0.000000e+00 1691/1698 (99%)
EPI333448 A/Moscow/WRAIR1929P/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332724 A/Jiangsu-suzhou/J41/2011 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332277 A/Bangkok/INS485/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332141 A/Bangkok/INS510/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332117 A/Bangkok/INS514/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332077 A/Khon Kaen/INS522/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331605 A/MACAU/200808/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331286 A/VICTORIA/504/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI330180 A/Beijing-Xicheng/SWL1261/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI326195 A/Macedonia/86/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI319999 A/Barbados/104/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI319434 A/Brussels/S0004/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI313274 A/Karaj/5795/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI310026 A/Mississippi/04/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI309937 A/Laos/1096/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307854 A/Beijing/3907/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307338 A/Ontario/720545/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307166 A/Moscow/IIV-33/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI304621 A/Karaj/5685/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI304609 A/Karaj/5718/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI302386 A/TOWNSVILLE/72/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI302129 A/Arkansas/06/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331480 A/VICTORIA/516/2011 (A/H1N1 swl) segment 4 (HA) 3096.1 0.000000e+00 1684/1688 (99%)
EPI330348 A/Hunan-Yuhua/SWL173/2011 (A/H1N1 swl) segment 4 (HA) 3094.3 0.000000e+00 1690/1698 (99%)
EPI310046 A/New Hampshire/03/2011 (A/H1N1 swl) segment 4 (HA) 3094.3 0.000000e+00 1690/1698 (99%)
EPI332585 A/Nonthaburi/78/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332269 A/Bangkok/INS489/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332229 A/Bangkok/INS495/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332213 A/Bangkok/INS498/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332109 A/Bangkok/INS517/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332085 A/Khon Kaen/INS521/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332045 A/Bangkok/INS513/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330340 A/Hunan-Yueyanglou/SWL143/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330212 A/Jiangxi/SWL throat swab1/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330188 A/Hunan-Yanfeng/SWL140/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI324422 A/Sydney/DD3-57/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI321227 A/Sydney/DD3-51/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320903 A/Singapore/TT160/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320857 A/Singapore/GP433/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320855 A/Singapore/GP39/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI316490 A/Wisconsin/16/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI315854 A/Thailand/CU-B4148/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309917 A/Kansas/02/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309789 A/Alaska/08/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309786 A/Alaska/07/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI306383 A/Vladivistok/7/2010 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI304619 A/Ulaanbaatar/190/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI302117 A/Japan/8736/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI316442 A/Tanzania/42/2011 (A/H1N1 swl) segment 4 (HA) 3090.6 0.000000e+00 1689/1698 (99%)
EPI310127 A/Texas/04/2011 (A/H1N1 swl) segment 4 (HA) 3090.6 0.000000e+00 1689/1698 (99%)
EPI331597 A/BRISBANE/122/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI316395 A/North Carolina/06/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309984 A/Maryland/06/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309877 A/Delaware/08/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309843 A/Connecticut/04/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309837 A/Colorado/11/2010 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI307849 A/Beijing/3884/2010 (A/H1N1) segment 4 (HA) 3088.7 0.000000e+00 1688/1696 (99%)
EPI333102 A/TASMANIA/21/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI332610 A/Hunan-Jishou/1116/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI332309 A/Bangkok/INS480/2010 (A/H1N1) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI331345 A/SINGAPORE/592/2010 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI330865 A/Hunan-Jishou/SWL1124/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI330849 A/Heilongjiang-Longsha/SWL1181/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI330697 A/Hunan-Jishou/SWL1116/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI330689 A/Shandong-Zhifu/SWL1200/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)

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niman
PostPosted: Mon Sep 05, 2011 10:17 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27289
Location: Pittsburgh, PA USA
Top 100 NA matches

EPI334771 A/NEWCASTLE/2/2011 (A/H1N1 swl) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI331206 A/Hong Kong/3973/2011 (A/H1N1 swl) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI334703 A/Slovenia/861/2011 (A/H1N1 swl) segment 6 (NA) 2566.1 0.000000e+00 1403/1410 (99%)
EPI334715 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI333101 A/TASMANIA/21/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332307 A/Bangkok/INS480/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332267 A/Bangkok/INS489/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332251 A/Bangkok/INS492/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332211 A/Bangkok/INS498/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332107 A/Bangkok/INS517/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332083 A/Khon Kaen/INS521/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332075 A/Khon Kaen/INS522/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI332067 A/Khon Kaen/INS523/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331604 A/MACAU/200808/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331596 A/BRISBANE/122/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331479 A/VICTORIA/516/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331476 A/DARWIN/82/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331464 A/BRISBANE/69/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331051 A/Minsk/741/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI331023 A/Lyon/CHU/52.412/2010 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI329089 A/AICHI/155/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI324424 A/Sydney/DD3-57/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI321475 A/TOCHIGI/64/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI321465 A/IBARAKI/104/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI321229 A/Sydney/DD3-51/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI321021 A/Sydney/DD3-15/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI320542 A/Hangzhou/B30/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI318128 A/Laos/SA012/2010 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI315872 A/Thailand/CU-H2548/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI315856 A/Thailand/CU-B4148/2010 (A/H1N1) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI309936 A/Laos/1096/2010 (A/H1N1 swl) segment 6 (NA) 2560.6 0.000000e+00 1402/1410 (99%)
EPI321481 A/HOKKAIDO/93/2011 (A/H1N1 swl) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 2556.9 0.000000e+00 1401/1410 (99%)
EPI334477 A/FUKUI/72/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI334471 A/SHIZUOKA/13/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI333106 IVR-162(A/BRISBANE/70/2011) (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332331 A/Bangkok/INS477/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332315 A/Bangkok/INS479/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332275 A/Bangkok/INS485/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332115 A/Bangkok/INS514/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332091 A/Bangkok/INS519/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI332043 A/Bangkok/INS513/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI330696 A/Hunan-Jishou/SWL1116/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI330664 A/Hebei-Yuhua/SWL1187/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI330211 A/Jiangxi/SWL throat swab1/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI330083 A/Beijing-Dongcheng/SWL51/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329085 A/SAITAMA/179/2010 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329083 A/SAITAMA/177/2010 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329080 A/OSAKA-C/2004/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329077 A/SAITAMA/160/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329073 A/TOTTORI/17/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI329048 A/TOCHIGI/34/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI326225 A/Slovakia/150/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI326205 A/Ukraine/104/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI326199 A/Macedonia/29z/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI324785 A/Novosibirsk/01/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI324432 A/Sydney/DD3-58/2011 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321471 A/IBARAKI/108/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321469 A/IBARAKI/107/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321467 A/IBARAKI/106/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321463 A/IBARAKI/103/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321450 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321448 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321440 A/KAGAWA/1/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321437 A/CHIBA/1027/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321433 A/OITA/77/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321424 A/WAKAYAMA-C/6/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321417 A/AKITA/5/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321213 A/Sydney/DD3-48/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI321181 A/Sydney/DD3-44/2010 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320904 A/Singapore/TT160/2011 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320565 A/Kaliningrad/RII4/2011 (A/H1N1) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320541 A/Hangzhou/B24/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320526 A/Hangzhou/A30/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320525 A/Hangzhou/A2/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320260 A/SHIMANE/24/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320238 A/SAGAMIHARA/5/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320233 A/KUMAMOTO-C/7/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI320140 A/St. Petersburg/100/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI319998 A/Barbados/104/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI319620 A/Ukraine/135/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI319618 A/Ukraine/135/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318173 A/TOCHIGI/105/2010 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318172 A/FUKUOKA-C/37/2010 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318160 A/SHIGA/45/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318159 A/SHIGA/39/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318156 A/NIIGATA/52/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318155 A/NAGANO/2219/2010 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318147 A/SHIGA/43/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)
EPI318143 A/SHIGA/30/2011 (A/H1N1 swl) segment 6 (NA) 2555.0 0.000000e+00 1401/1410 (99%)

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cpg
PostPosted: Thu Sep 15, 2011 2:45 pm 
Offline

Joined: Fri Sep 11, 2009 8:30 am
Posts: 687
More clusters of tamiflu resistance in NSW unrelated to the Newcastle outbreak. The health department have put out a alert.

"In addition to the previously reported cluster of pandemic (H1N1) 2009 influenza viruses showing resistance to oseltamivir within the Hunter New England region of New South Wales, a further two cases linked to this cluster have been detected in other regions of NSW. These additional cases had no prior travel history to the Hunter New England region. All of the viruses are sensitive to zanamivir and have not shown any antigenic changes that would affect their recognition by vaccine-induced antibodies."

http://www.health.gov.au/internet/main/ ... lucurr.htm

http://www.tripdatabase.com/doc/1254187 ... ce#content
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niman
PostPosted: Thu Sep 15, 2011 2:55 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27289
Location: Pittsburgh, PA USA
GISAID NA sequences with H274Y

EPI334771 A/NEWCASTLE/2/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI334715 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI333155 A/MIYAZAKI/53/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI332645 A/BRISBANE/15/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI331693 A/VICTORIA/1036/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI331563 A/BRUNEI/15/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI331341 A/SINGAPORE/591/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329139 A/HIROSHIMA/66/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329104 A/KANAGAWA/75/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329101 A/FUKUSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329097 A/TOKYO/11203/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329089 A/AICHI/155/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329085 A/SAITAMA/179/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329083 A/SAITAMA/177/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329080 A/OSAKA-C/2004/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329077 A/SAITAMA/160/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329075 A/SAITAMA/88/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329073 A/TOTTORI/17/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329054 A/OSAKA/83/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329052 A/OSAKA/71/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329050 A/SHIMANE/164/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI329048 A/TOCHIGI/34/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI326225 A/Slovakia/150/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI325000 A/Rome/PTV8/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI324948 A/Paris/7974/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI323926 A/Thailand/CU-MV9/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321489 A/NARA/59/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321487 A/NARA/56/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321483 A/NAGASAKI-C/58/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321475 A/TOCHIGI/64/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321473 A/GIFU/21/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321471 A/IBARAKI/108/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321469 A/IBARAKI/107/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321467 A/IBARAKI/106/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321465 A/IBARAKI/104/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321463 A/IBARAKI/103/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321455 A/ISHIKAWA/70/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321450 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321448 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321442 A/NARA/54/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321440 A/KAGAWA/1/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321437 A/CHIBA/1027/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321433 A/OITA/77/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321429 A/OITA/72/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321424 A/WAKAYAMA-C/6/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321417 A/AKITA/5/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI321213 A/Sydney/DD3-48/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320860 A/Singapore/GP4344/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320610 A/Lebanon/09L-22/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320456 A/Chennai/10/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320273 A/OKINAWA/40/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320246 A/NIIGATA/214/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320214 A/Lorraine/7214/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI320038 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI319175 A/Perth/29/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318161 A/KAGAWA/2/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318149 A/WAKAYAMA/23/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318133 A/SAPPORO/19/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI317539 A/Denmark/72/2011 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI315541 A/Boston/678/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI313295 A/Lyon/48.49/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI313293 A/Lyon/48.425/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI313262 A/Hong Kong/FFD/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI313247 A/Hong Kong/423432/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI313234 A/Hong Kong/23369/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309995 A/Maryland/08/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309989 A/Maryland/07/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309969 A/Maryland/04/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309953 A/Maine/04/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309907 A/Indiana/04/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309869 A/Delaware/07/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309864 A/Delaware/06/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309856 A/Delaware/04/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI309836 A/Colorado/11/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307878 A/Thailand/CU-H2389/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307877 A/Thailand/CU-H2358/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307876 A/Thailand/CU-H2283/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307875 A/Thailand/CU-H1222r/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307254 A/Taiwan/2343/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307252 A/Taiwan/7949/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307248 A/Taiwan/7336/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307246 A/Taiwan/7855/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307245 A/Taiwan/7717/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI307244 A/Taiwan/6663/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305490 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305475 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305291 A/Galicia/RR6664/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305273 A/Galicia/RR6685/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305271 A/Galicia/RR6666/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305172 A/Baleares/RR6121/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI305096 A/Navarra/RR5989/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI304300 A/Canada-PQ/RV3189/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI304133 A/Canada-ON/RV2904/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI302870 A/Canada-AB/RV2828/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI302838 A/Canada-AB/RV2823/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI302726 A/Canada-AB/RV2735/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI301267 A/SAITAMA-C/174/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300710 A/England/94840153/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300709 A/England/94840152/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300701 A/England/94780019/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300697 A/England/94740140/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300696 A/England/94740139/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300695 A/England/94740138/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300694 A/England/94740137/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300692 A/England/94740049/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300691 A/England/94640080/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300689 A/England/94640078/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300681 A/England/00380020/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300680 A/England/00380018/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300679 A/England/00380015/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300678 A/England/00380013/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300677 A/England/00380009/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300483 A/Argentina/HNRG1160/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300477 A/Argentina/HNRG1154/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI300452 A/Argentina/HNRG1129/2009 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI295379 A/CHIBA/12/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI291744 A/NARA/39/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI287186 A/SENDAI/151/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI286659 A/AICHI/1576/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI283057 A/Dundgobi/381/2010 (A/H1N1) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI281310 A/Hokkaido/256/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI277206 A/Athens/INS417/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI276935 A/WAKAYAMA-C/19/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272885 A/Lisboa/171/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272584 A/OSAKA-C/20/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272419 A/SHIZUOKA-C/21/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272416 A/OKAYAMA/1/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272414 A/NIIGATA-C/186/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272406 A/MIYAGI/170/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272398 A/KUMAMOTO/2/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI272386 A/AICHI/1222/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI270023 A/Perth/262/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269973 A/Perth/431/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269970 A/Perth/261/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269934 A/Singapore/591/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269914 A/Victoria/2132/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269895 A/Sydney/2056/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269886 A/Sydney/614/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269884 A/Sydney/612/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269470 A/Netherlands/2445b/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI269454 A/Netherlands/2290/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI267069 A/Valencia/HLF2/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI266942 A/Pennsylvania/30/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI266342 A/Mexico city/CIA10/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI266272 A/Pennsylvania/30/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI263442 A/Singapore/GP562/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI256824 A/Lisboa/171/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI256822 A/Lisboa/171/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI256740 A/Mexico city/CIA9/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI255966 A/Israel/MF15979/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI255852 A/Israel/MF 6290/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI255064 A/Haishu/SWL110/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254680 A/Seoul/7/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254677 A/Seoul/2883/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254674 A/Seoul/1870/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254668 A/Seoul/1785/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254665 A/Gyeongnam/1820/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254660 A/Gwangju/61/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254655 A/Daejeon/1871/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254646 A/Daegu/1873/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254643 A/Daegu/1855/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254532 A/SAPPORO/31/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI254530 A/SHIZUOKA-C/247/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI253896 A/Sachsen/4/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI253840 A/Rheinland-Pfalz/86/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI253253 A/Hunan/SWL3/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI252356 A/Ontario/25913/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI252316 A/Ontario/10296/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI252308 A/Ontario/10016/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI249969 A/Bethesda/NIH106-D32/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI249968 A/Bethesda/NIH106-D14/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI249966 A/Bethesda/NIH107-D31/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248555 A/NIIGATA/19/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248553 A/NIIGATA/16/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248549 A/YAMAGATA/29/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248547 A/TOTTORI/225/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248545 A/TOKYO/91256/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248543 A/TOCHIGI/612/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248541 A/SHIZUOKA-C/270/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248539 A/SHIZUOKA-C/172/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248537 A/SAITAMA/396/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248536 A/MIE/100/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248534 A/KOBE/92495/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248532 A/KITAKYUSYU/4/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248530 A/HYOGO/2003/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248528 A/FUKUSHIMA/452/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI248526 A/FUKUOKA/1/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI247124 A/Mexico/InDRE797/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI246371 A/Thessaloniki/225/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI245818 A/Buenos Aires/HIFJM240866/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244409 A/Singapore/GN285/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244284 A/YOKOHAMA/1538/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244282 A/YAMAGATA/534/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244280 A/WAKAYAMA/291/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244278 A/WAKAYAMA-C/1/2010 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244276 A/TOCHIGI/609/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244274 A/TOCHIGI/471/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244270 A/SAPPORO/576/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244268 A/SAITAMA/408/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244266 A/SAITAMA/374/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI244264 A/MIYAZAKI/111/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI243983 A/Israel/MF 6290/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI243866 A/North Carolina/59/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI243812 A/YOKOHAMA/1563/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI239642 A/Vietnam/2043/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI234568 A/Russia/61/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI233201 A/North Carolina/49/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI233181 A/North Carolina/42/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI233177 A/North Carolina/41/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI233174 A/North Carolina/40/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI233169 A/North Carolina/39/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230336 A/Argentina/HNRG23/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230274 A/Israel/6290/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230124 A/SAPPORO/190/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230122 A/OSAKA/2024/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230118 A/NIIGATA/1233/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI230116 A/CHIBA/1017/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI227954 A/UAE/A01/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226599 A/SHIMANE/188/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226591 A/SHIGA/61/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226575 A/NIIGATA/1234/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226559 A/YOKOHAMA/1394/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226407 A/SHIGA/45/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226399 A/SHIGA/43/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226375 A/SAITAMA-C/88/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI226295 A/OITA/126/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI222974 A/Nagasaki/HA-58/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI221279 A/Catalonia/NS7362/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI221206 A/Washington/29/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI221068 A/California/38/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI218402 A/Quebec/147365/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI218372 A/Pavia/21/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI217487 A/Iwate/3/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI217217 A/Utah/34/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI217180 A/Tennessee/17/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI217169 A/Tanzania/381/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI216844 A/Georgia/23/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI214014 A/Tokushima/2/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI212348 A/Hong Kong/2369/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI211498 A/Texas/48/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI211492 A/Texas/47/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI211430 A/Illinois/10/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI210408 A/Denmark/525/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI210402 A/Denmark/528/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI194264 A/Texas/47/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI191938 A/Washington/29/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI191936 A/Washington/28/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI190546 A/Hunan/SWL3/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI190216 A/Denmark/528/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI189162 A/Singapore/57/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI186325 A/Yamaguchi/22/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)
EPI184961 A/Osaka/180/2009 (A/H1N1 swl) segment 6 (NA) 38.1 3.220953e-03 20/20 (100%)

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niman
PostPosted: Thu Sep 15, 2011 2:57 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 27289
Location: Pittsburgh, PA USA
Top 100 HA matches to Newcastle sequence with H274Y
EPI334772 A/NEWCASTLE/2/2011 (A/H1N1 swl) segment 4 (HA) 3136.7 0.000000e+00 1698/1698 (100%)
EPI331207 A/Hong Kong/3973/2011 (A/H1N1 swl) segment 4 (HA) 3120.1 0.000000e+00 1695/1698 (99%)
EPI332333 A/Bangkok/INS477/2010 (A/H1N1) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI332317 A/Bangkok/INS479/2010 (A/H1N1) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313320 A/Tehran/5963/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313318 A/Tehran/5958/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313284 A/Karaj/6072/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313282 A/Karaj/5987/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313280 A/Karaj/5985/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI313201 A/Ghom/215/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI301435 A/Tehran/5652/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI298421 A/Karaj/5327/2010 (A/H1N1 swl) segment 4 (HA) 3109.0 0.000000e+00 1693/1698 (99%)
EPI332717 A/Phiippines/TMC11-9/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332253 A/Bangkok/INS492/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332173 A/Bangkok/INS504/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI332069 A/Khon Kaen/INS523/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330324 A/Gansu-Chengguan/SWL579/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330284 A/Jiangsu-Xinpu/SWL187/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI330076 A/Hunan-Furong/SWL410/2011 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI324430 A/Sydney/DD3-58/2011 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI316000 A/Thailand/CU-H2358/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315886 A/Thailand/CU-H2911/2011 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315878 A/Thailand/CU-H2698/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315862 A/Thailand/CU-B4339/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI315730 A/Thailand/CU-H2543/2010 (A/H1N1) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313286 A/Karaj/6076/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313278 A/Karaj/5924/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313276 A/Karaj/5921/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI313272 A/Karaj/5607/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI304607 A/Tehran/5675/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI302345 A/BRUNEI/237/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI301437 A/Tehran/5858/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI294405 A/BRUNEI/218/2010 (A/H1N1 swl) segment 4 (HA) 3103.5 0.000000e+00 1692/1698 (99%)
EPI331608 A/PHILIPPINES/1343/2011 (A/H1N1 swl) segment 4 (HA) 3099.8 0.000000e+00 1691/1698 (99%)
EPI301722 A/California/23/2010 (A/H1N1 swl) segment 4 (HA) 3099.8 0.000000e+00 1691/1698 (99%)
EPI335590 A/Bangkok/INS484/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI335566 A/Bangkok/INS488/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI335550 A/Bangkok/INS502/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI335534 A/Bangkok/INS509/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI333448 A/Moscow/WRAIR1929P/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332724 A/Jiangsu-suzhou/J41/2011 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332277 A/Bangkok/INS485/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332141 A/Bangkok/INS510/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332117 A/Bangkok/INS514/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI332077 A/Khon Kaen/INS522/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331605 A/MACAU/200808/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331286 A/VICTORIA/504/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI330180 A/Beijing-Xicheng/SWL1261/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI326195 A/Macedonia/86/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI319999 A/Barbados/104/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI319434 A/Brussels/S0004/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI313274 A/Karaj/5795/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI310026 A/Mississippi/04/2011 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI309937 A/Laos/1096/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307854 A/Beijing/3907/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307338 A/Ontario/720545/2010 (A/H1N1) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI307166 A/Moscow/IIV-33/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI304621 A/Karaj/5685/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI304609 A/Karaj/5718/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI302386 A/TOWNSVILLE/72/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI302129 A/Arkansas/06/2010 (A/H1N1 swl) segment 4 (HA) 3098.0 0.000000e+00 1691/1698 (99%)
EPI331480 A/VICTORIA/516/2011 (A/H1N1 swl) segment 4 (HA) 3096.1 0.000000e+00 1684/1688 (99%)
EPI330348 A/Hunan-Yuhua/SWL173/2011 (A/H1N1 swl) segment 4 (HA) 3094.3 0.000000e+00 1690/1698 (99%)
EPI310046 A/New Hampshire/03/2011 (A/H1N1 swl) segment 4 (HA) 3094.3 0.000000e+00 1690/1698 (99%)
EPI332585 A/Nonthaburi/78/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332269 A/Bangkok/INS489/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332229 A/Bangkok/INS495/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332213 A/Bangkok/INS498/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332109 A/Bangkok/INS517/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332085 A/Khon Kaen/INS521/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI332045 A/Bangkok/INS513/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330340 A/Hunan-Yueyanglou/SWL143/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330212 A/Jiangxi/SWL throat swab1/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI330188 A/Hunan-Yanfeng/SWL140/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI324422 A/Sydney/DD3-57/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI321227 A/Sydney/DD3-51/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320903 A/Singapore/TT160/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320857 A/Singapore/GP433/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI320855 A/Singapore/GP39/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI316490 A/Wisconsin/16/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI315854 A/Thailand/CU-B4148/2010 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309917 A/Kansas/02/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309789 A/Alaska/08/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI309786 A/Alaska/07/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI306383 A/Vladivistok/7/2010 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI304619 A/Ulaanbaatar/190/2011 (A/H1N1) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI302117 A/Japan/8736/2011 (A/H1N1 swl) segment 4 (HA) 3092.4 0.000000e+00 1690/1698 (99%)
EPI316442 A/Tanzania/42/2011 (A/H1N1 swl) segment 4 (HA) 3090.6 0.000000e+00 1689/1698 (99%)
EPI310127 A/Texas/04/2011 (A/H1N1 swl) segment 4 (HA) 3090.6 0.000000e+00 1689/1698 (99%)
EPI331597 A/BRISBANE/122/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI316395 A/North Carolina/06/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309984 A/Maryland/06/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309877 A/Delaware/08/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309843 A/Connecticut/04/2011 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI309837 A/Colorado/11/2010 (A/H1N1 swl) segment 4 (HA) 3088.7 0.000000e+00 1689/1698 (99%)
EPI307849 A/Beijing/3884/2010 (A/H1N1) segment 4 (HA) 3088.7 0.000000e+00 1688/1696 (99%)
EPI335542 A/Bangkok/INS508/2010 (A/H1N1) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI333102 A/TASMANIA/21/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI332610 A/Hunan-Jishou/1116/2011 (A/H1N1 swl) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)
EPI332309 A/Bangkok/INS480/2010 (A/H1N1) segment 4 (HA) 3086.9 0.000000e+00 1689/1698 (99%)

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