Rhiza Labs FluTracker Forum

JCVI released a series of H1N1 sequences from Thailand today. Included were three NA sequences with S246N which were collected in the summer of 2010.

_________________
www.twitter.com/hniman

S246N at Genbank

CY096388.1 Influenza A virus (A/Bangkok/INS494/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY096380.1 Influenza A virus (A/Bangkok/INS493/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY096364.1 Influenza A virus (A/Bangkok/INS491/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091711.1 Influenza A virus (A/Singapore/SGH01/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091709.1 Influenza A virus (A/Singapore/KK68/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091705.1 Influenza A virus (A/Singapore/KK117/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091701.1 Influenza A virus (A/Singapore/GP730/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091697.1 Influenza A virus (A/Singapore/GP582/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091691.1 Influenza A virus (A/Singapore/GP46/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091685.1 Influenza A virus (A/Singapore/EN34/2011(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091681.1 Influenza A virus (A/Singapore/KK734/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091673.1 Influenza A virus (A/Singapore/GP4588/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY091671.1 Influenza A virus (A/Singapore/GP4565/2010(H1N1)) neuraminidase (NA) gene, complete cds 40.1 40.1 100% 0.061 100%
CY067724.1 Influenza A virus (A/England/94280035/2009(H1N1)) segment 6 sequence 40.1 40.1 100% 0.061 100%
CY073507.1 Influenza A virus (A/Athens/INS350/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%
CY072472.1 Influenza A virus (A/Athens/INS342/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%
CY062877.1 Influenza A virus (A/Athens/INS161/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%
CY062259.1 Influenza A virus (A/Malaysia/15521/2009(H1N1)) segment 6 sequence 40.1 40.1 100% 0.061 100%
CY061037.1 Influenza A virus (A/Texas/JMS390/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%
CY054869.1 Influenza A virus (A/California/VRDL34/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%
CY054709.1 Influenza A virus (A/California/VRDL4/2009(H1N1)) segment 6, complete sequence 40.1 40.1 100% 0.061 100%

_________________
www.twitter.com/hniman

S246N at GISAID

EPI329108 A/AICHI/20/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI321461 A/MIYAZAKI/40/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320898 A/Singapore/SGH01/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320896 A/Singapore/KK734/2010 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320894 A/Singapore/KK68/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320890 A/Singapore/KK117/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320886 A/Singapore/GP730/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320882 A/Singapore/GP582/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320870 A/Singapore/GP46/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320868 A/Singapore/GP4588/2010 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320866 A/Singapore/GP4565/2010 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320854 A/Singapore/EN34/2011 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI320035 A/Louisiana/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319577 A/Singapore/640/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319198 A/Darwin/75/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319184 A/Darwin/54/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319183 A/Darwin/11/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319181 A/Darwin/74/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319179 A/Brunei/1/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319177 A/Perth/30/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319175 A/Perth/29/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319173 A/Darwin/70/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319171 A/Darwin/10/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319169 A/Darwin/74/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319167 A/Darwin/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI319165 A/Darwin/75/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI318147 A/SHIGA/43/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI310030 A/Montana/03/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI309686 A/Slovenia/234/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI309634 A/Croatia/18576-1/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI302350 A/DARWIN/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI300684 A/England/94280035/2009 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI295425 A/Bangladesh/3938/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI283116 A/Athens/INS350/2009 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI282081 A/Athens/INS342/2009 (A/H1N1) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI273698 A/Massachusetts/02/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI272424 A/TOCHIGI/654/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI269914 A/Victoria/2132/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI258376 A/Athens/INS161/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI258143 A/Jiangxi-Donghu/SWL157/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI257695 A/Jiangxi-Donghu/SWL131/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI255066 A/Malaysia/15521/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI252924 A/Texas/JMS390/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI252142 A/Minnesota/02/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI250022 A/North Carolina/05/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI247401 A/North Carolina/03/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI237144 A/California/VRDL4/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI237104 A/California/VRDL34/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)
EPI232355 A/Latvia/11-1410cs/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.847322e+00 14/14 (100%)

_________________
www.twitter.com/hniman

LOCUS CY096388 1420 bp cRNA linear VRL 08-AUG-2011
DEFINITION Influenza A virus (A/Bangkok/INS494/2010(H1N1)) neuraminidase (NA)
gene, complete cds.
ACCESSION CY096388
VERSION CY096388.1 GI:343132302
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Bangkok/INS494/2010(H1N1))
ORGANISM Influenza A virus (A/Bangkok/INS494/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1420)
AUTHORS Spiro,D., Halpin,R., Bera,J., Ghedin,E., Hostetler,J., Fedorova,N.,
Hine,E., Overton,L., Kim,M., Szczypinski,B., Stockwell,T., Sitz,J.,
Katzel,D., Li,K., Axelrod,N., Safford,T., Amedeo,P., Schobel,S.,
Shrivastava,S., Wang,S., Resnick,A., Thovarai,V., Lynfield,R.,
Losso,M., Davey,R., Dwyer,D., Neaton,J., Lane,C., Lin,X.,
Wentworth,D.E., Bao,Y., Sanders,R., Dernovoy,D., Kiryutin,B.,
Lipman,D.J. and Tatusova,T.
TITLE The NIAID Influenza Genome Sequencing Project
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1420)
CONSRTM The NIAID Influenza Genome Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2011) on behalf of JCVI/University of
Minnesota/NCBI, National Center for Biotechnology Information, NIH,
Bethesda, MD 20894, USA
COMMENT This work was supported by the National Institute of Allergy and
Infectious Diseases (NIAID), Genome Sequencing Centers for
Infectious Diseases (GSCID) program.
FEATURES Location/Qualifiers
source 1..1420
/organism="Influenza A virus
(A/Bangkok/INS494/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/Bangkok/INS494/2010"
/serotype="H1N1"
/host="human; gender F; age 26Y"
/db_xref="taxon:1038200"
/segment="6"
/country="Thailand: Bangkok"
/collection_date="23-Aug-2010"
misc_feature 1..1420
/db_xref="IRD:NIGSP_INS_00494.NA"
gene 3..1412
/gene="NA"
CDS 3..1412
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AEL89714.1"
/db_xref="GI:343132303"
/translation="MNPNQKIITIGSVCMTIGMANLILQIGNIILIWISHSIQLGNQN
QIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSK
DNSIRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMS
CPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKS
WRNNILRTQESECACVNGSCFTVMTDGPNDGQASYKIFRIEKGKIVKSVEMNAPNYHY
EECSCYPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGS
CGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRNGFEMIWDPNGWTGTDNNFSVKQD
IIGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNS
DTVGWSWPDGAELPFTIDK"
ORIGIN
1 aaatgaatcc aaaccaaaag ataataacca ttggttcggt ctgtatgaca attggaatgg
61 ccaacttaat attacaaatt ggaaacataa tcttaatatg gattagccac tcaattcaac
121 ttgggaatca aaatcagatt gaaacatgca atcaaagcgt cattacttat gaaaacaaca
181 cttgggtaaa tcagacatac gttaacatca gcaacaccaa ctttgctgct ggacagtcag
241 tggtttccgt gaaattagcg ggcaattcct ctctctgccc tgttagtgga tgggctatat
301 acagtaaaga caacagtata agaatcggtt ccaaggggga tgtgtttgtc ataagggaac
361 cattcatatc atgttccccc ttggaatgca ggaccttctt cttgactcaa ggggccttgc
421 taaatgacaa acattccaat ggaaccatta aagacaggag cccatatcga actctaatga
481 gctgtcctat tggtgaagtt ccctctccat acaactcaag atttgaatca gtcgcttggt
541 cagcaagtgc ttgtcatgat ggcatcaatt ggctaacaat tggaatttct ggcccagaca
601 atggggcagt ggctgtgtta aagtacaacg gcataataac agacactatc aagagttgga
661 gaaacaatat attgagaaca caagagtctg aatgtgcatg tgtaaatggt tcttgcttta
721 ctgtaatgac cgatggacca aatgatggac aggcctcata caagatcttc agaatagaaa
781 agggaaagat agtcaaatca gtcgaaatga atgcccctaa ttatcactat gaggaatgct
841 cctgttatcc tgattctagt gaaatcacat gtgtgtgcag ggataactgg catggctcga
901 atcgaccgtg ggtgtctttc aaccagaatc tggaatatca gataggatac atatgcagtg
961 ggattttcgg agacaatcca cgccctaatg ataagacagg cagttgtggt ccagtatcgt
1021 ctaatggagc aaatggagta aaaggatttt cattcaaata cggcaatggt gtttggatag
1081 ggagaactaa aagcattagt tcaagaaacg gttttgagat gatttgggat ccgaacggat
1141 ggactggaac agacaataac ttctcagtaa agcaagatat cataggaata aatgagtggt
1201 caggatatag cgggagtttt gttcagcatc cagaactaac agggctggat tgtataagac
1261 cttgcttctg ggttgagcta atcagagggc ggcccaaaga gaacacaatc tggactagcg
1321 ggagcagcat atccttttgt ggtgtaaaca gtgacactgt gggttggtct tggccagacg
1381 gtgctgagtt gccatttacc attgacaagt aatttgttca

_________________
www.twitter.com/hniman