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CDC 2011 H1N1 Sequences With D225N and Q226R
http://fluboard.rhizalabs.com/forum/viewtopic.php?f=5&t=7272
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Author:  niman [ Thu Jun 23, 2011 6:45 am ]
Post subject:  CDC 2011 H1N1 Sequences With D225N and Q226R

The CDC has relesed a series of 2011 sequences at GISAID, largely from collections from Feb - April, 2011. Many of the sequences had D225N or Q226R, due in part to isolation of virus using eggs, which selects for 2,3 binding specificities.

Since 2,3 receptors are found on human lung, sequences with such changes (D225G, D225N, Q226R) are more likely to cause more severe infections in patients.

Author:  niman [ Thu Jun 23, 2011 7:13 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

The CDC released 42 HA sequences at GISAID. Four had D225N and eight had Q226R,

Author:  niman [ Thu Jun 23, 2011 7:18 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

A198G pedigree profile. The more recent isolate of MS/07/11 was grown in eggs and has D225N

EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.487676e+00 14/14 (100%)
EPI300382 A/Argentina/HNRG106/2009 (A/H1N1) segment 4 (HA) 27.0 6.487676e+00 14/14 (100%)
EPI276600 A/Delaware/AF2178/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.487676e+00 14/14 (100%)
EPI271659 A/swine/Illinois/03037/2010 (A/H1N1) segment 4 (HA) 27.0 6.487676e+00 14/14 (100%)
EPI180163 A/swine/North Carolina/46203/2003 (A/H1N1) segment 4 (HA) 27.0 6.487676e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:21 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

C234T

EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318099 A/swine/Iowa/A01049137/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318098 A/swine/Iowa/A01049128/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317339 A/Thailand/CU-B3188/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317006 A/swine/Minnesota/A0109101/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317005 A/swine/Iowa/A0109098/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317004 A/swine/Iowa/A0109097/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI315848 A/swine/South Dakota/7/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI315515 A/Boston/670/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI312558 A/swine/Hong Kong/1306/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI312556 A/swine/Hong Kong/NS883/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI312554 A/swine/Hong Kong/NS856/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308929 A/Ohio/AF21799/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308477 A/Mexico City/WRAIR1752N/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI267760 A/New York/6530/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI246025 A/swine/Minnesota/02950/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI225960 A/HIROSHIMA/316/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI218352 A/Norway/3689/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI217438 A/Catalonia/S1756/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI216860 A/Hawaii/26/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI212833 A/New York/3629/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI180213 A/swine/North Carolina/48718/2003 (A/H1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:35 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

The only difference in the HA sequence of MS/07/11 grown in mammalian cells or eggs is D225N in the egg isolate.

Author:  niman [ Thu Jun 23, 2011 7:43 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

G435A

EPI320093 A/New Mexico/06/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317044 A/Oklahoma/1707/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI312190 A/swine/Hong Kong/10081/2001 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI311359 A/swine/Hong Kong/1304/2003 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309883 A/Florida/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308517 A/Lima/WRAIR8648F/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308045 A/Bogota/WRAIR0435T/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308037 A/Bogota/WRAIR0435N/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304772 A/Baleares/RR6121/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304699 A/Baleares/RR5840/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302744 A/Canada-AB/RV2810/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295468 A/Kyrgyzstan/15/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295465 A/Kyrgyzstan/45/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295408 A/Massachusetts/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI294692 A/England/4780352/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI291778 A/Myanmar/JP-S-014/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI288274 A/Boston/663/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI287176 A/Myanmar/JP-S-026/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI283480 A/Peru/FLA9527/2009 (A/H1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI282713 A/Taipei/WRAIR1470T/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280292 A/Colombia/6868/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278358 A/Ghana/FS-411/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278217 A/Korea/AF2427/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278216 A/Korea/AF2426/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278041 A/South Carolina/WRSP520/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277945 A/Mexico City/WR1701T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277929 A/Mexico City/WR1696T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277913 A/Mexico City/WR1692T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277897 A/Mexico City/WR1683T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277657 A/Santo Domingo/WR1072T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277641 A/Bishkek/WR0881T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI276606 A/Florida/AF2184/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI276500 A/ENG/94840077/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI276377 A/ENG/756/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI270543 A/California/VRDL123/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI262394 A/Kenya/0019/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI257520 A/Tianjin-Hexi/SWL123/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI256001 A/Macedonia/3302/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255851 A/Afghanistan/6706/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255845 A/Albania/2193/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255207 A/Afghanistan/N10786/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255202 A/Afghanistan/N10760/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255193 A/Afghanistan/N09833/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255185 A/Afghanistan/N09787/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI254962 A/New York/6943/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI249180 A/Managua/655.02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI249012 A/Managua/1127.02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI247938 A/Wisconsin/629-D00636/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI247069 A/Pune/NIV10278/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI246596 A/New York/5141/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI246232 A/Thessaloniki/2376/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244474 A/swine/Taichung/E3/1992 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243841 A/swine/Korea/VD13/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243839 A/swine/Korea/VD12/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243837 A/swine/Korea/VD11/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243833 A/swine/Korea/VD09/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243831 A/swine/Korea/VD08/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243829 A/swine/Korea/VD07/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243827 A/swine/Korea/VD06/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243819 A/swine/Korea/VD02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243817 A/swine/Korea/VD01/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI241698 A/Bishkek/03/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232329 A/KathmanduBGN/18-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232327 A/KathmanduBGN/16-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232326 A/KathmanduBGN/16-2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232324 A/KathmanduBGN/17-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232322 A/KathmanduBGN/17-2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232320 A/KathmanduBGN/15-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232318 A/KathmanduBGN/15-2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232315 A/KathmanduBGN/13-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232314 A/KathmanduBGN/13-2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232313 A/KathmanduBGN/14-1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232311 A/KathmanduBGN/14-2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI230416 A/Russia/200/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227886 A/Vermont/23/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI225880 A/FUKUI/73/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI213057 A/New York/4072/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI172963 A/swine/Ratchaburi/NIAH550/2003 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI172947 A/swine/Saraburi/NIAH13021/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI126857 A/swine/Saraburi/NIAH13021/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI71782 A/swine/Wisconsin/1/1967 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:45 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

A137T (MX/1658/11 also has D225N)

EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI320045 A/Mexico/1658/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI319507 A/Netherlands/219/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI319503 A/Moldova/448/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI319495 A/Limoges/1159/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318269 A/Malmoe/5/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318266 A/Umea/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318263 A/Uppsala/6/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318244 A/Gothenburg/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317530 A/Brasov/49666/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317441 A/Thailand/CU-H2539/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316904 A/Uppsala/5/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316838 A/Milan/210/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316832 A/Milan/121/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316798 A/Milan/186/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316796 A/Milan/170/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316493 A/Wisconsin/17/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316475 A/Washington/09/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316352 A/Georgia/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316335 A/California/17/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI313237 A/Hong Kong/33230/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI310096 A/Pennsylvania/01/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI310052 A/New York/01/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309911 A/Iowa/01/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309886 A/Florida/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309880 A/Ethiopia/217/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309840 A/Connecticut/01/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309661 A/Ireland/6534/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308927 A/North Carolina/AF21797/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308906 A/Korea/AF21782/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308905 A/Korea/AF21781/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI308903 A/Korea/AF21779/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307476 A/Thailand/CU-H2301/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307470 A/Thailand/CU-H2295/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307374 A/Ontario/3620/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307362 A/Ontario/804635/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307354 A/Ontario/778873/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307346 A/Ontario/741328/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI306373 A/Tunisia/422/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI305529 A/Orebro/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI305527 A/Uppsala/1/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI305467 A/Laos/I969/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304605 A/Karaj/5660/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304463 A/Norway/322/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304462 A/Norway/319/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304458 A/Norway/291/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304398 A/PHILIPPINES/5232/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304389 A/VICTORIA/1203/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302414 A/VICTORIA/1204/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302411 A/VICTORIA/1202/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302113 A/Ontario/RV0019/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302110 A/Wyoming/01/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI302098 A/Wisconsin/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301877 A/India/Delhi/ND190/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301872 A/India/Delhi/ND271/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301870 A/India/Delhi/ND279/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301869 A/India/Delhi/ND294/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301810 A/Andalucia/RR6900/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301695 A/Pennsylvania/34/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301445 A/Luxembourg/548/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301401 A/England/118/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301399 A/Alborz/5607/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301395 A/Stockholm/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI300987 A/Bangladesh/8003/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI298423 A/Shahriar/5336/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI298420 A/Bandar Abbas/5096/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI297253 A/Kobe/91524/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI296646 A/Thailand/ST_0153/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI296645 A/Thailand/ST_0111/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI296644 A/Thailand/ST_0113/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI296643 A/Thailand/ST_0112_1/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI296642 A/Thailand/SN_0112_2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295750 A/England/5500192/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295741 A/England/139/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295740 A/England/119/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295738 A/England/125/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295733 A/England/99/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295732 A/England/4500186/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295731 A/England/93/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295730 A/England/83/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295729 A/England/91/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295728 A/England/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295727 A/England/87/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295725 A/England/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295724 A/England/79/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295519 A/New Hampshire/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295516 A/Bhutan/72/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295501 A/Bangladesh/1685/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295481 A/Pennsylvania/17/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295474 A/Pennsylvania/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295396 A/SAGA/90/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295385 A/SAGA/85/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295384 A/CHIBA/23/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI294682 A/England/118/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI294040 A/NAGANO/2181/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI294029 A/YOKOHAMA/84/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI287707 A/Qingdao/1629/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI287706 A/Qingdao/1626/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI286652 A/Stockholm/5/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281690 A/Alagoas/266/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281689 A/Alagoas/201/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281688 A/Alagoas/171/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281687 A/Alagoas/166/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281686 A/Alagoas/143/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281684 A/Alagoas/119/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280326 A/Wisconsin/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280286 A/Florida/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI279208 A/CANBERRA/8/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278875 A/India/007/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273897 A/India/3725/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI272392 A/CHIBA-C/22/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI254673 A/Seoul/1870/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI253286 A/Hunan/SWL5/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI253182 A/Shanghai/SWL6/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI249308 A/Wisconsin/629-D01556/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI249292 A/Wisconsin/629-D01244/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI246052 A/YAMAGATA/721/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244041 A/KYOTO/2/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI241235 A/Roma/ISS223/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI240603 A/NIIGATA/1371/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI240572 A/ENG/434/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI233085 A/VICTORIA/2131/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232364 A/Moldova/G-170/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227842 A/Texas/67/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227705 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227701 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI223193 A/Wisconsin/629-D00739/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI218770 A/Wisconsin/629-D01147/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI216612 A/Shanghai/SWL2/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215973 A/Moldova/G-170/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI214482 A/Wisconsin/629-D01445/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI214061 A/Toronto/T0106/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI212349 A/Italy/128/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI211994 A/Catalonia/S1169/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI211477 A/North Carolina/28/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI210452 A/Qatar/89/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI210392 A/Ukraine/259/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI194194 A/Michigan/06/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI187706 A/Ancona/04/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI186849 A/Shanghai/60T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:48 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

D225N

EPI320101 A/New York/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI320045 A/Mexico/1658/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI320027 A/Kansas/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI319507 A/Netherlands/219/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318105 A/swine/North Carolina/A01049174/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI318104 A/swine/North Carolina/A01049173/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317525 A/Constanta/50378/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317491 A/Caras Severin/663/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI317485 A/Prahova/2704/2010 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316797 A/Milan/184/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316366 A/Kentucky/18/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI315836 A/Mexico/InDRE1945/2011 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI309661 A/Ireland/6534/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI307492 A/human/Norway/A1s/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301885 A/India/Delhi/VE442/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI301399 A/Alborz/5607/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI295447 A/Kenya/3872/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280344 A/Christchurch/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280341 A/Christchurch/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI280298 A/Hong Kong/2172/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278740 A/swine/Germany-NI/R856/10 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278738 A/swine/Germany-NI/R757/10 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278734 A/swine/Germany-NI/R299/09 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278647 A/swine/Germany-NI/R3394/09 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278607 A/Christchurch/16/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI269974 A/Perth/431/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI269484 A/Netherlands/2629/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI269476 A/Netherlands/2457b/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI266064 A/Moscow oblast/CRIE-STV/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI266036 A/Ulyanovsk/CRIE-SHTA/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI266016 A/Tambov/CRIE-SPN/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI257276 A/Fujian-Gulou/SWL11951/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI256390 A/Neimenggu-Hangjinhouqi/SWL51/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255911 A/Ireland/M79556/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255909 A/Ireland/M79555/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255841 A/Baden-Wurttemberg/502/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI255234 A/Egypt/N14648/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI254551 A/India/4725/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI254344 A/Nagano/RC1/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI253919 A/Yaroslavl/IIV-198/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI250037 A/South Carolina/47/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI246052 A/YAMAGATA/721/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244580 A/swine/Italy/7704/2001 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244525 A/swine/Italy/30073/2006 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244524 A/swine/Italy/30019-2/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244523 A/swine/Italy/29977/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244522 A/swine/Italy/29966/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244521 A/swine/Italy/23255/2006 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244520 A/swine/Italy/19498/2006 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244519 A/swine/Italy/19447/2006 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI244382 A/Malaysia/8860/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI240603 A/NIIGATA/1371/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI235513 A/Chernivtsi/844/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI235489 A/Lviv/638/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI235488 A/Lviv/646/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI234526 A/Russia/100/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI233076 A/VICTORIA/2125/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI232951 A/YOKOHAMA/1357/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI230795 A/Ankara/26/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI230387 A/Argentina/HNRG8/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI230277 A/Orenburg/IIV2974/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227705 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI227701 A/Michigan/10/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI223480 A/Texas/43132503/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI221259 A/Ukraine/02/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI218127 A/New York/4576/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI213223 A/Sao Paulo/53845/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI213222 A/Sao Paulo/53838/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI213073 A/New York/4099/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI186629 A/swine/Cotes d'Armor/016007/2005 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI181234 A/swine/Granstedt/IDT3475/2004 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI181229 A/swine/Kitzen/IDT6142/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI181228 A/swine/Groitzsch/IDT6016-2/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI181227 A/swine/Groitzsch/IDT6016-1/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI130101 A/Ohio/201/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI130099 A/Ohio/101/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI130097 A/Ohio/101/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI130095 A/Ohio/101/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI130093 A/Ohio/101/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI122229 A/swine/Cloppenburg/IDT4777/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI122211 A/swine/Doetlingen/IDT4735/2005 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI116889 A/Auckland/18/98 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI115331 A/South Africa/214/1999 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI74725 A/Memphis/44/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI58144 A/Chile/1/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI57688 A/Memphis/39/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI56562 A/Memphis/54/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI55313 A/Memphis/53/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI55294 A/Memphis/47/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI55275 A/Memphis/31/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54971 A/Memphis/51/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54952 A/Memphis/50/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54933 A/Memphis/48/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54914 A/Memphis/46/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54895 A/Memphis/42/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54876 A/Memphis/41/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54857 A/Memphis/40/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI54838 A/Memphis/38/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI49713 A/Memphis/35/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI49694 A/Memphis/25/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48663 A/Memphis/26/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48644 A/Memphis/22/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48625 A/Memphis/21/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48226 A/Memphis/32/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48207 A/Memphis/30/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48188 A/Memphis/29/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48169 A/Memphis/28/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48150 A/Memphis/27/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48131 A/Memphis/24/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48112 A/Memphis/23/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI48093 A/Memphis/20/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI40372 A/Memphis/10/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI38985 A/Memphis/14/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI38018 A/Memphis/2/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI36954 A/Memphis/19/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI35434 A/New York/626/1996 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI34294 A/Memphis/13/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI34275 A/Memphis/11/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33565 A/Memphis/18/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33546 A/Memphis/17/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33527 A/Memphis/16/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33508 A/Memphis/15/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33489 A/Memphis/12/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33470 A/Memphis/8/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33451 A/Memphis/7/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33432 A/Memphis/4/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI33413 A/Memphis/3/1983 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI21574 A/sw/Gent/108/01 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI15204 A/Ecuador/2625/01 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI563 A/Nagano/6059/1996 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI285 A/Kamata/69/1996 (A/H1N1 seasonal) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:50 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

I269V

EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI312616 A/swine/Hong Kong/713/2007 (A/H1N2) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304914 A/LaRioja/RR6514/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304877 A/LaRioja/RR6508/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304793 A/Andalucia/RR6346/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304591 A/swine/QLD/09-02865-07/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304571 A/swine/QLD/09-02865-10/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304570 A/swine/QLD/09-02865-07/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304569 A/swine/QLD/09-02865-05/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304568 A/swine/QLD/09-02865-02/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI304458 A/Norway/291/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI292871 A/Brisbane/2014/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI292870 A/Brisbane/2015/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI281745 A/Texas/AF2612/2009 (A/H1N1) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI278041 A/South Carolina/WRSP520/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI277961 A/Mexico City/WR1706T/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI276297 A/ENG/706/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273857 A/Ethiopia/13/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273717 A/Minnesota/03/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273665 A/Hawaii/08/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273647 A/Hawaii/05/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI273643 A/California/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI272832 A/Qingdao/292/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI271251 A/Athens/INS270/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI266063 A/Ivanovo/CRIE-RNA/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI266059 A/Tambov/CRIE-FOS/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI265995 A/Chita/CRIE-8/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI258734 A/Odense/INS143/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI257508 A/Guangdong-Luohu/SWL1916/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI256398 A/Neimenggu-Hangjinhouqi/SWL54/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI247269 A/Ethiopia/45/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI247266 A/Ethiopia/06/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI245103 A/Australia/61/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI243986 A/Macedonia/24/2010 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI235554 A/Algeria/G2485/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215838 A/VICTORIA/2112/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215819 A/DARWIN/2126/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215729 A/VICTORIA/2048/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215702 A/SOLOMON ISLANDS/2002/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI215692 A/VICTORIA/3035/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI210498 A/Abu Dhabi/41/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

Author:  niman [ Thu Jun 23, 2011 7:52 am ]
Post subject:  Re: CDC 2011 H1N1 Sequences With D225N and Q226R

T935C and T940C combination

EPI320066 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)
EPI316378 A/Mississippi/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.512651e+00 14/14 (100%)

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