Rhiza Labs FluTracker Forum

The place to discuss the flu
It is currently Tue May 21, 2013 12:41 pm

View unanswered posts | View active topics


Board index » Discussion » General Discussion

All times are UTC - 5 hours [ DST ]



Post new topic Reply to topic  Page 3 of 3
  [ 28 posts ]  Go to page Previous  1, 2, 3
  Print view Previous topic | Next topic 
Author Message
niman
PostPosted: Tue Jun 21, 2011 7:23 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/06211 ... cerns.html

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jun 24, 2011 6:17 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
niman wrote:
Recent NA sequences from Japan with H274Y

EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318161 A/KAGAWA/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318149 A/WAKAYAMA/23/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318133 A/SAPPORO/19/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305490 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305475 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)

Latest H274Y sequences from Japan

EPI320273 A/OKINAWA/40/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320246 A/NIIGATA/214/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jun 24, 2011 6:19 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
NIID released 16 NA sequences from 2011 and 5 had H274Y.

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jun 24, 2011 6:40 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
Recent NA sequences from Japan with H274Y

EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318161 A/KAGAWA/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318149 A/WAKAYAMA/23/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318133 A/SAPPORO/19/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305490 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305475 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)

Latest H274Y sequences from Japan

EPI320273 A/OKINAWA/40/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320246 A/NIIGATA/214/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)

Note that the five new isolates cover three new locations in Japan (Okinawa, Osaka, Shizuoka).

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jun 24, 2011 7:10 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
niman wrote:
Recent NA sequences from Japan with H274Y

EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318161 A/KAGAWA/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318149 A/WAKAYAMA/23/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318133 A/SAPPORO/19/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305490 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305475 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)

Latest H274Y sequences from Japan

EPI320273 A/OKINAWA/40/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320246 A/NIIGATA/214/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)

Note that the five new isolates cover three new locations in Japan (Okinawa, Osaka, Shizuoka).

Two of the five (A/OSAKA/52/2011 and A/HIROSHIMA/55/2011) represent the sub-clade clonally expanding in Japan.

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jul 01, 2011 6:47 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
niman wrote:
Recent NA sequences from Japan with H274Y

EPI318171 A/HOKKAIDO/12/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318168 A/NIIGATA/51/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318167 A/KOBE/537/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318165 A/IWATE/1008/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318161 A/KAGAWA/2/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318154 A/HIROSHIMA/45/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318152 A/HIROSHIMA/49/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318149 A/WAKAYAMA/23/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318139 A/NIIGATA/62/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318133 A/SAPPORO/19/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI318131 A/YAMAGUCHI/35/2010 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305490 A/HIROSHIMA/17/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)
EPI305475 A/YOKOHAMA/29/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.505485e+00 14/14 (100%)

Latest H274Y sequences from Japan

EPI320273 A/OKINAWA/40/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320268 A/OSAKA/52/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320265 A/HIROSHIMA/55/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320246 A/NIIGATA/214/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)
EPI320244 A/SHIZUOKA/37/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.514022e+00 14/14 (100%)

Note that the five new isolates cover three new locations in Japan (Okinawa, Osaka, Shizuoka).

Latest sequences from Japan with H274Y
EPI321489 A/NARA/59/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321487 A/NARA/56/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321483 A/NAGASAKI-C/58/2009 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321475 A/TOCHIGI/64/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321473 A/GIFU/21/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321471 A/IBARAKI/108/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321469 A/IBARAKI/107/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321467 A/IBARAKI/106/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321465 A/IBARAKI/104/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321463 A/IBARAKI/103/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321455 A/ISHIKAWA/70/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321450 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321448 A/SHIGA/28/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321442 A/NARA/54/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321440 A/KAGAWA/1/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321437 A/CHIBA/1027/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321433 A/OITA/77/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321429 A/OITA/72/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321424 A/WAKAYAMA-C/6/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)
EPI321417 A/AKITA/5/2011 (A/H1N1 swl) segment 6 (NA) 27.0 6.560976e+00 14/14 (100%)

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jul 01, 2011 6:50 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
S246N

EPI321461 A/MIYAZAKI/40/2011 (A/H1N1 swl

_________________
www.twitter.com/hniman
Top
 Profile  
 
niman
PostPosted: Fri Jul 01, 2011 9:30 am 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 27331
Location: Pittsburgh, PA USA
The latest sequences expand the earlier clonal expansion, but also contain a second large cluster, representing a second large clonal expansion in Japan.

_________________
www.twitter.com/hniman
Top
 Profile  
 
Display posts from previous:  Sort by  
Post new topic Reply to topic  Page 3 of 3
  [ 28 posts ]  Go to page Previous  1, 2, 3

Board index » Discussion » General Discussion

All times are UTC - 5 hours [ DST ]

Who is online

Users browsing this forum: niman, Yahoo [Bot] and 15 guests

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
Powered by phpBB® Forum Software © phpBB Group