Rhiza Labs FluTracker Forum

apparantly (almost) no Chi


Im NRZ Influenza wurden seit Beginn der Saison 2010/11 bisher 538 Influenzaviren angezüchtet und/oder auf ihre antigenen und/oder genetischen Eigenschaften untersucht
Genetische Analysen zeigen eine Ko-Zirkulation verschiedener Gruppen von A(H1N1) 2009 Viren, die in ihrem Antigenprofil jedoch vergleichbar sind.
Die in Deutschland zirkulierenden A(H1N1) 2009-Viren repräsentieren seit einiger Zeit überwiegend eine Gruppe, die durch einen Aminosäureaustausch im Hämagglutinin an Position 185 (S185T) charakterisiert ist. Diese A/England/142/2010-like Viren werden auch in anderen europäischen Ländern vermehrt nachgewiesen.

http://influenza.rki.de/CirculatingViruses.aspx



A/Baden-Württemberg/17/11 11.01.2011 < 10 640
A/Sachsen/5/11 11.01.2011 < 10 1280
A/Hessen/6/11 22.01.2011 < 10 1280
A/Bayern/16/11 12.01.2011 < 10 640
A/Rheinland-Pfalz/13/11 13.01.2011 < 10 1280
A/Sachsen-Anhalt/1/11 18.01.2011 < 10 1280
A/Nordrhein-Westfalen/20/11 20.01.2011 < 10 2560
A/Berlin/28/11 24.01.2011 < 10 320
A/Bremen/4/11 24.01.2011 < 10 1280
A/Berlin/30/11 24.01.2011 < 10 2560
A/Niedersachsen/21/11 24.01.2011 < 10 640
A/Schleswig-Holstein/4/11 24.01.2011 < 10 320
A/Saarland/3/11 24.01.2011 < 10 640
A/Sachsen/6/11 26.01.2011 < 10 320
A/Schleswig-Holstein/5/11 27.01.2011 < 10 160

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no patents on genes, publish the GISAID sequences !

Hong Kong :

phylo-tree:
http://www.eurosurveillance.org/images/ ... M_Fig2.jpg

article:
http://www.eurosurveillance.org/ViewArt ... leId=19807



google gave this:
http://www.siamanswer.com/media/influenza%20virus

doesn't seem to work in my browser

_________________
no patents on genes, publish the GISAID sequences !

You remain confused on the difference between phylogenetic analysis and antigen characterization.

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www.twitter.com/hniman

The most recent sequences from Hong Kong have S188T (labeled as S202T). S188T is dominant throughout the northern hemisphere.

_________________
www.twitter.com/hniman

but no chi (Chihuahua-strain) in Asia ?!
flu comes from Asia, usually

first appearance A/Germany/AF2207/2010/01/

_________________
no patents on genes, publish the GISAID sequences !

Please. Chihuahua evolved in North America (inital sub-clades were in Mexico in 2009).

_________________
www.twitter.com/hniman

Here's the Chihuahu lineage

EPI310100 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI309966 A/Maryland/04/2011 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI308476 A/Mexico City/WRAIR1752N/2010 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI308444 A/Chicago/WRAIR1691P/2009 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI288271 A/Boston/658/2009 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI287758 A/Athens/INS392/2010 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI282758 A/Mexico City/WRAIR1786T/2009 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI282742 A/Mexico City/WRAIR1779T/2009 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI282734 A/Mexico City/WRAIR1773T/2010 (A/H1N1) segment 3 (PA) 27.0 6.40951
EPI278892 A/Texas/03/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277968 A/Mexico City/WR1708T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277952 A/Mexico City/WR1704T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277904 A/Mexico City/WR1687T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277880 A/Mexico City/WR1673N/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277832 A/Taipei/WR1472T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI277664 A/Mexico City/WR1090N/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI271490 A/San Diego/INS214/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI271450 A/Pensacola/INS212/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI271394 A/Madrid/INS222/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI271186 A/Athens/INS261/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI271082 A/Aarhus/INS237/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270931 A/Athens/INS275/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270676 A/California/VRDL7/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270660 A/California/VRDL4/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270588 A/California/VRDL128/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270524 A/California/VRDL120/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI270444 A/California/VRDL110/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI267807 A/New York/7480/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI267663 A/California/VRDL6/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI259270 A/Athens/INS122/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI258949 A/Wisconsin/629-D02082/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI258917 A/Wisconsin/629-D00888/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI258605 A/California/VRDL98/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI258573 A/California/VRDL92/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI258317 A/Athens/INS125/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI254076 A/Texas/JMS366/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI254013 A/Utah/03/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI253989 A/New York/03/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI253001 A/Texas/JMS404/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252937 A/Texas/JMS392/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252809 A/Texas/JMS371/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252745 A/Texas/JMS359/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252377 A/Ontario/29801/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252361 A/Ontario/26184/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252184 A/Georgia/04/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252103 A/Wyoming/01/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252081 A/South Carolina/01/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252075 A/Oregon/42/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252044 A/Georgia/01/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI252024 A/California/02/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI251993 A/Mexico/476/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI250019 A/North Carolina/05/2010 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI249669 A/Texas/46182018/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI249387 A/Wisconsin/629-D02489/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI249363 A/Wisconsin/629-D02073/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI248321 A/Wisconsin/629-D02317/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI248105 A/Wisconsin/629-D01190/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI248025 A/Wisconsin/629-D00908/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI247656 A/New York/5196/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI246819 A/New York/6663/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI246611 A/New York/5173/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI223789 A/Texas/45140902/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI215341 A/Mexico City/WR1312N/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI215333 A/Mexico City/WR1311T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI215325 A/Mexico City/WR1310N/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI215317 A/Mexico City/WR1308T/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951
EPI215285 A/Mexico City/WR1297N/2009 (A/H1N1 swl) segment 3 (PA) 27.0 6.40951

_________________
www.twitter.com/hniman

Niman

How long do you think till there is a actual pandemic. Next month or next year.

Lucky for the public that the WHO only issued this weak alert instead a full blown one.

Hey I'm sure this pandemic will come. Just a matter of time. 20 years maybe !!!

I remain yours forever clueless.

I agree. You remain beyond clueless.

_________________
www.twitter.com/hniman

looks to me like chi is reassorted.
Segments 1,2,3,8 from the Mexico-City (Sept.2009) strain
which was also in California Oct.2009-Feb.2010

http://www.flutrackers.com/forum/showpost.php?p=405468
http://www.flutrackers.com/forum/showpost.php?p=405482


while segments 4,5,6,7 (or such) seem to come from
another strain. I.e. HA from a A/Germany/AF2207/2010/01/09
like virus.

_________________
no patents on genes, publish the GISAID sequences !