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PostPosted: Sat Apr 16, 2011 1:34 pm 
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niman wrote:
T462A at GISAID

EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI269540 A/swine/Minnesota/03022/2010 (A/H1N1) segment 4 (HA) 27.0 6.19077

T462 at Genbank
CY089605.1 Influenza A virus (A/Mexico/InDRE2222/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089593.1 Influenza A virus (A/Mexico/InDRE2200/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089590.1 Influenza A virus (A/Mexico/InDRE2197/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089587.1 Influenza A virus (A/Mexico/InDRE2195/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089583.1 Influenza A virus (A/Mexico/InDRE2192/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089391.1 Influenza A virus (A/Mexico/InDRE1947/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089389.1 Influenza A virus (A/Mexico/InDRE1946/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089387.1 Influenza A virus (A/Mexico/InDRE1945/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
HM570055.1 Influenza A virus (A/swine/Minnesota/03022/2010(H1N1)) segment 4 hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%

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PostPosted: Sat Apr 16, 2011 1:40 pm 
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Location: Pittsburgh, PA USA
niman wrote:
K149N pedigree

EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI266546 A/Boston/115/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI218962 A/Wisconsin/629-D02206/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077

K149N at Genbank
CY089605.1 Influenza A virus (A/Mexico/InDRE2222/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089593.1 Influenza A virus (A/Mexico/InDRE2200/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089590.1 Influenza A virus (A/Mexico/InDRE2197/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089587.1 Influenza A virus (A/Mexico/InDRE2195/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089583.1 Influenza A virus (A/Mexico/InDRE2192/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089391.1 Influenza A virus (A/Mexico/InDRE1947/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089389.1 Influenza A virus (A/Mexico/InDRE1946/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089387.1 Influenza A virus (A/Mexico/InDRE1945/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY064500.1 Influenza A virus (A/Boston/115/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY050420.1 Influenza A virus (A/Wisconsin/629-D02206/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%

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PostPosted: Sat Apr 16, 2011 1:42 pm 
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Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
niman wrote:
K149N pedigree

EPI310133 A/Utah/08/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310130 A/Texas/07/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310103 A/Pennsylvania/02/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI310093 A/Oregon/03/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI309970 A/Maryland/04/2011 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI266546 A/Boston/115/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077
EPI218962 A/Wisconsin/629-D02206/2009 (A/H1N1 swl) segment 4 (HA) 27.0 6.19077

K149N ay Genbank
CY089605.1 Influenza A virus (A/Mexico/InDRE2222/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089593.1 Influenza A virus (A/Mexico/InDRE2200/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089590.1 Influenza A virus (A/Mexico/InDRE2197/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089587.1 Influenza A virus (A/Mexico/InDRE2195/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089583.1 Influenza A virus (A/Mexico/InDRE2192/2011(H1N1)) hemagglutinin (HA) gene, partial cds 28.2 28.2 100% 1.4 100%
CY089391.1 Influenza A virus (A/Mexico/InDRE1947/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089389.1 Influenza A virus (A/Mexico/InDRE1946/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY089387.1 Influenza A virus (A/Mexico/InDRE1945/2011(H1N1)) hemagglutinin (HA) gene, complete cds 28.2 28.2 100% 1.4 100%
CY064500.1 Influenza A virus (A/Boston/115/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%
CY050420.1 Influenza A virus (A/Wisconsin/629-D02206/2009(H1N1)) segment 4, complete sequence 28.2 28.2 100% 1.4 100%

Full sequences from PA/02/2011 and MD/04/2011 are at GISAID and there is no reassortment.

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PostPosted: Sat Apr 16, 2011 3:11 pm 
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Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/04161 ... ad_US.html

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PostPosted: Sat Apr 16, 2011 5:09 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/04161 ... quent.html

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