Rhiza Labs FluTracker Forum

Six recent Denmark H1N1 sequences (including 2011) were reelased at Genbank. Five has S188T and two of those with S188T had mixtures with D225G.

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LOCUS JF327374 1634 bp cRNA linear VRL 20-MAR-2011
DEFINITION Influenza A virus (A/Denmark/24/2011(H1N1)) segment 4 hemagglutinin
(HA) gene, partial cds.
ACCESSION JF327374
VERSION JF327374.1 GI:326260966
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Denmark/24/2011(H1N1))
ORGANISM Influenza A virus (A/Denmark/24/2011(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1634)
AUTHORS Andresen,B.S. and Nielsen,L.P.
TITLE Influenza season 2010-2011 Denmark
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1634)
AUTHORS Andresen,B.S. and Nielsen,L.P.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Influenza Laboratory, Statens Serum
Institut, Artillierivej 5, Copenhagen S 2300, Denmark
FEATURES Location/Qualifiers
source 1..1634
/organism="Influenza A virus (A/Denmark/24/2011(H1N1))"
/mol_type="viral cRNA"
/strain="A/Denmark/24/2011"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:985066"
/segment="4"
/country="Denmark"
/collection_date="15-Jan-2011"
/note="lineage: swl"
gene <1..>1634
/gene="HA"
CDS <1..>1634
/gene="HA"
/codon_start=3
/product="hemagglutinin"
/protein_id="ADZ52945.1"
/db_xref="GI:326260967"
/translation="ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKL
CKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFINYE
ELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNS
YPKLSKSYINDKGKEVLVLWGIHHPSTTADQQSLYQNADAYVFVGTSRYSKKFKPEIA
IRPKVRXQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVH
DCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFG
AIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIEKMNTQ
FTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYE
KVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL
ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNG"
ORIGIN
1 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag
61 acacagtact agaaaagaat gtaacagtaa cacactctgt taaccttcta gaagacaagc
121 ataacgggaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca
181 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agctcatggt
241 cctacattgt ggaaacatct agttcagaca atggaacgtg ttacccagga gatttcatca
301 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgagatat
361 tccccaagac aagttcatgg cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc
421 ctcatgctgg agcaaaaagc ttctacaaaa atttaatatg gctagttaaa aaaggaaatt
481 catacccaaa gctcagcaaa tcctacatta atgataaagg gaaagaagtc ctcgtgctgt
541 ggggcattca ccatccatct actactgctg accaacaaag tctctatcag aatgcagatg
601 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaataa
661 gacccaaagt gagggrtcaa gaagggagaa tgaactatta ctggacacta gtagagccgg
721 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcgcaa
781 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gattgcaata
841 caacttgtca gacacccaag ggtgctataa acaccagcct cccatttcag aatatacatc
901 cgatcacaat tggaaaatgt ccaaaatatg taaaaagcac aaaattgaga ctggccacag
961 gattgaggaa tgtcccgtct attcaatcta gaggcctatt tggggccatt gccggcttca
1021 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc
1081 aggggtcagg atatgcagcc gacctgaaga gcacacagaa tgccattgac aagattacta
1141 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagta ggtaaagagt
1201 tcaaccacct ggaaaaaaga atagagaatt taaataaaaa agttgatgat ggtttcctgg
1261 acatttggac ttacaatgcc gaactgttgg ttctattgga aaatgaaaga actttggact
1321 accacgattc aaatgtgaag aacttgtatg aaaaggtaag aaaccagtta aaaaacaatg
1381 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgataac acgtgcatgg
1441 aaagtgtcaa aaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca
1501 gagaagaaat agatggggta aagctggaat caacaaggat ttaccagatt ttggcgatct
1561 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agtttctgga
1621 tgtgttctaa tggg

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LOCUS JF327365 1634 bp cRNA linear VRL 20-MAR-2011
DEFINITION Influenza A virus (A/Denmark/120/2010(H1N1)) segment 4
hemagglutinin (HA) gene, partial cds.
ACCESSION JF327365
VERSION JF327365.1 GI:326260960
DBLINK Project: 37813
KEYWORDS .
SOURCE Influenza A virus (A/Denmark/120/2010(H1N1))
ORGANISM Influenza A virus (A/Denmark/120/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1634)
AUTHORS Andresen,B.S. and Nielsen,L.P.
TITLE Influenza season 2010-2011 Denmark
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1634)
AUTHORS Andresen,B.S. and Nielsen,L.P.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Influenza Laboratory, Statens Serum
Institut, Artillierivej 5, Copenhagen S 2300, Denmark
FEATURES Location/Qualifiers
source 1..1634
/organism="Influenza A virus (A/Denmark/120/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/Denmark/120/2010"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:985063"
/segment="4"
/country="Denmark"
/collection_date="20-Dec-2010"
/note="lineage: swl"
gene <1..>1634
/gene="HA"
CDS <1..>1634
/gene="HA"
/codon_start=3
/product="hemagglutinin"
/protein_id="ADZ52942.1"
/db_xref="GI:326260961"
/translation="ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKL
CKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFINYE
ELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNS
YPKLSKSYINDKGKEVLVLWGIHHPSTTADQQSLYQNADAYVFVGTSRYSKKFKPEIA
IRPKVRXQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVH
DCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFG
AIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIEKMNTQ
FTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYE
KVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL
ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNG"
ORIGIN
1 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag
61 acacagtact agaaaagaat gtaacagtaa cacactctgt taaccttcta gaagacaagc
121 ataacgggaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca
181 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agctcatggt
241 cctacattgt ggaaacatct agttcagaca atggaacgtg ttacccagga gatttcatca
301 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgagatat
361 tccccaagac aagttcatgg cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc
421 ctcatgctgg agcaaaaagc ttctacaaaa atttaatatg gctagttaaa aaaggaaatt
481 catacccaaa gctcagcaaa tcctacatta atgataaagg gaaagaagtc ctcgtgctgt
541 ggggcattca ccatccatct actactgctg accaacaaag tctctatcag aatgcagatg
601 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaataa
661 gacccaaagt gagggrtcaa gaagggagaa tgaactatta ctggacacta gtagagccgg
721 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcgcaa
781 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gattgcaata
841 caacttgtca gacacccaag ggtgctataa acaccagcct cccatttcag aatatacatc
901 cgatcacaat tggaaaatgt ccaaaatatg taaaaagcac aaaattgaga ctggccacag
961 gattgaggaa tgtcccgtct attcaatcta gaggcctatt tggggccatt gccggcttca
1021 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc
1081 aggggtcagg atatgcagcc gacctgaaga gcacacagaa tgccattgac aagattacta
1141 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagta ggtaaagagt
1201 tcaaccacct ggaaaaaaga atagagaatt taaataaaaa agttgatgat ggtttcctgg
1261 acatttggac ttacaatgcc gaactgttgg ttctattgga aaatgaaaga actttggact
1321 accacgattc aaatgtgaag aacttgtatg aaaaggtaag aaaccagtta aaaaacaatg
1381 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgataac acgtgcatgg
1441 aaagtgtcaa aaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca
1501 gagaagaaat agatggggta aagctggaat caacaaggat ttaccagatt ttggcgatct
1561 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agtttctgga
1621 tgtgctctaa tggg

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