Rhiza Labs FluTracker Forum

Top 100 MP sequences

CY078426.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 7 sequence 1965 1965 100% 0.0 100%
CY078423.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 7 sequence 1957 1957 100% 0.0 99%
GQ502909.1 Influenza A virus (A/Toronto/R8557/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1937 1937 99% 0.0 99%
HQ728113.1 Influenza A virus (A/swine/Taiwan/CH-1204/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
HQ728105.1 Influenza A virus (A/swine/Taiwan/PT-1204/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
HQ661365.1 Influenza A virus (A/Russia/01-MA/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
HQ393496.1 Influenza A virus (A/swine/Taiwan/TD-2542/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
CY069644.1 Influenza A virus (A/Singapore/527/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY069629.1 Influenza A virus (A/Singapore/471/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
HQ011421.1 Influenza A virus (A/Guangdong/45/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
CY063851.1 Influenza A virus (A/Singapore/KK066/2010(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY063791.1 Influenza A virus (A/Singapore/ON1868/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY063783.1 Influenza A virus (A/Singapore/ON0801/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
AB538392.1 Influenza A virus (A/Nagano/RC1/2009(H1N1)) M2, M1 genes for matrix protein 2, matrix protein 1, complete cds, segment: 7 1929 1929 99% 0.0 99%
CY060737.1 Influenza A virus (A/Ontario/35273/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060721.1 Influenza A virus (A/Ontario/320266/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060713.1 Influenza A virus (A/Ontario/315637/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060705.1 Influenza A virus (A/Ontario/315613/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060697.1 Influenza A virus (A/Ontario/315187/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060689.1 Influenza A virus (A/Ontario/315181/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060673.1 Influenza A virus (A/Ontario/315047/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060665.1 Influenza A virus (A/Ontario/315015/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060649.1 Influenza A virus (A/Ontario/314603/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060641.1 Influenza A virus (A/Ontario/314137/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060633.1 Influenza A virus (A/Ontario/314095/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060625.1 Influenza A virus (A/Ontario/313762/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060609.1 Influenza A virus (A/Ontario/308054/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060601.1 Influenza A virus (A/Ontario/305598/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060593.1 Influenza A virus (A/Ontario/305139/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060585.1 Influenza A virus (A/Ontario/304434/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060577.1 Influenza A virus (A/Ontario/29801/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY060569.1 Influenza A virus (A/Ontario/296008/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
GU592890.1 Influenza A virus (A/Barnaul/04/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GU560009.1 Influenza A virus (A/Tomsk/05/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
CY054665.1 Influenza A virus (A/Russia/100/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY054657.1 Influenza A virus (A/Russia/61/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
GU367318.1 Influenza A virus (A/Tomsk/07/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GU108489.1 Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
CY046954.1 Influenza A virus (A/Norway/2010/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY046951.1 Influenza A virus (A/Norway/1623/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY046948.1 Influenza A virus (A/Norway/1613/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY045237.1 Influenza A virus (A/Taiwan/126/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY045229.1 Influenza A virus (A/Taiwan/115/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY045957.1 Influenza A virus (A/Toronto/T0106/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
CY045498.1 Influenza A virus (A/Baden-Wurttemberg/448/2009(H1N1)) segment 7 sequence 1929 1929 99% 0.0 99%
GQ463196.1 Influenza A virus (A/Changsha/78/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GQ426219.1 Influenza A virus (A/Tomsk/01/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GQ396512.1 Influenza A virus (A/Changsha/05/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GQ360066.1 Influenza A virus (A/Stockholm/32/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1929 1929 99% 0.0 99%
GQ166218.2 Influenza A virus (A/Bayern/63/2009(H1N1)) segment 7 matrix protein 2 (M2) gene, partial cds; and matrix protein 1 (M1) gene, complete cds 1929 1929 99% 0.0 99%
GQ866941.1 Influenza A virus (A/Thailand/CU-H276/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1927 1927 99% 0.0 99%
HM230702.1 Influenza A virus (A/Zhoushan/52/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1925 1925 99% 0.0 99%
GU560017.1 Influenza A virus (A/Tomsk/06/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1925 1925 99% 0.0 99%
GQ359767.1 Influenza A virus (A/Stockholm/31/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1925 1925 99% 0.0 99%
HQ652623.1 Influenza A virus (A/Jiangsu/S62/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
HQ652622.1 Influenza A virus (A/Jiangsu/S61/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
HM780473.1 Influenza A virus (A/Guangdong/06/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
CY063843.1 Influenza A virus (A/Singapore/GP999/2010(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY063833.1 Influenza A virus (A/Singapore/GP562/2010(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY061808.1 Influenza A virus (A/swine/Hong Kong/189/2010(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY061760.1 Influenza A virus (A/swine/Hong Kong/NS1810/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY061752.1 Influenza A virus (A/swine/Hong Kong/NS1809/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY061736.1 Influenza A virus (A/swine/Hong Kong/2299/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY061728.1 Influenza A virus (A/swine/Hong Kong/NS1583/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY060657.1 Influenza A virus (A/Ontario/315003/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY060561.1 Influenza A virus (A/Ontario/26184/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY060521.1 Influenza A virus (A/Ontario/222656/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY055306.1 Influenza A virus (A/Singapore/GN285/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY053755.1 Influenza A virus (A/Russia/200/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY053622.1 Influenza A virus (A/swine/Italy/290271/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
GU189650.1 Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
CY049279.1 Influenza A virus (A/Singapore/ON980/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
CY049063.1 Influenza A virus (A/Singapore/ON305/2009(H1N1)) segment 7 sequence 1921 1921 99% 0.0 99%
GU112091.2 Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
GQ365365.1 Influenza A virus (A/Stockholm/36/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
GQ360061.1 Influenza A virus (A/Stockholm/33/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
GQ150334.1 Influenza A virus (A/Christchurch/2/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1921 1921 99% 0.0 99%
CY081568.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1919 1919 98% 0.0 99%
CY060529.1 Influenza A virus (A/Ontario/235657/2009(H1N1)) segment 7 sequence 1919 1919 99% 0.0 99%
CY049239.1 Influenza A virus (A/Singapore/ON896/2009(H1N1)) segment 7 sequence 1919 1919 99% 0.0 99%
CY045506.1 Influenza A virus (A/Bayern/66/2009(H1N1)) segment 7 sequence 1919 1919 99% 0.0 99%
GQ223437.1 Influenza A virus (A/Finland/553/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1919 1919 99% 0.0 99%
CY065990.1 Influenza A virus (A/Ulaanbaatar/6525/2009(H1N1)) segment 7 sequence 1917 1917 98% 0.0 99%
CY053509.1 Influenza A virus (A/Taiwan/206/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY053501.1 Influenza A virus (A/Taiwan/177/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY053493.1 Influenza A virus (A/Taiwan/167/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY053477.1 Influenza A virus (A/Taiwan/143/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY049255.1 Influenza A virus (A/Singapore/ON901/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY045245.1 Influenza A virus (A/Taiwan/137/2009(H1N1)) segment 7 sequence 1917 1917 99% 0.0 99%
CY083911.1 Influenza A virus (A/Aalborg/INS132/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083887.1 Influenza A virus (A/San Diego/INS72/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083847.1 Influenza A virus (A/District of Columbia/INS23/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083839.1 Influenza A virus (A/San Diego/INS14/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083831.1 Influenza A virus (A/San Diego/INS07/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083678.1 Influenza A virus (A/Madrid/INS77/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
CY083656.1 Influenza A virus (A/San Diego/INS36/2009(H1N1)) matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
GU562459.1 Influenza A virus (A/Karasuk/01/2010(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
GU433034.1 Influenza A virus (A/Novosibirsk/02/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
GU433026.1 Influenza A virus (A/Tomsk/03/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%
GU211228.1 Influenza A virus (A/Russia/01/2009(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds 1915 1915 99% 0.0 99%

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South Dakota trH1N2 Swine Reassortants Raise Concerns
Recombinomics Commentary 15:50
February 11, 2011


South Dakota State University has released HA, NA, and MP sequences from three recent H1N2 swine reassortants (collected in November and December, 28, 2010). The sequences (A/swine/South Dakota/2/2010, A/swine/South Dakota/3/2010, and A/swine/South Dakota/4/2010) are related to each other, and the NA sequences are closely related to the human trH3N2 from Pennsylvania, A/Pennsylvania/14/2010........

http://www.recombinomics.com/News/02111 ... tants.html

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