Rhiza Labs FluTracker Forum

South Dakota State University has released HA, NA, and MP sequences from recent H1N2 swine reassortants (collected in November and late December, 2010). The sequences (A/swine/South Dakota/2/2010, A/swine/South Dakota/3/2010, A/swine/South Dakota/4/2010) are related to each other, and the NA sequences are closely related to the human trH3n2 from Pennsylvania, A/Pennsylvania/14/2010. However, the MP sequences are related to pH1N1 sequences and the HA sequences are related to swine H1N2 sequence (closest is A/swine/Minnesota/03043/2010).

_________________
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LOCUS CY081566 1686 bp cRNA linear VRL 04-FEB-2011
DEFINITION Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) hemagglutinin
(HA) gene, partial cds.
ACCESSION CY081566
VERSION CY081566.1 GI:321497514
KEYWORDS .
SOURCE Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
ORGANISM Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1686)
AUTHORS Clement,T.J.
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1686)
AUTHORS Clement,T.J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2011) Veterinary and Biomedical Sciences, South
Dakota State University, North Campus Drive Box 2175, Brookings, SD
57007, USA
FEATURES Location/Qualifiers
source 1..1686
/organism="Influenza A virus (A/swine/South
Dakota/4/2010(H1N2))"
/mol_type="viral cRNA"
/strain="A/swine/South Dakota/4/2010"
/serotype="H1N2"
/isolation_source="Lung"
/host="swine; age Nursery"
/db_xref="taxon:981232"
/segment="4"
/lab_host="P2 passage(s)"
/country="USA"
/collection_date="28-Dec-2010"
gene <1..1686
/gene="HA"
CDS <1..1686
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADW93972.1"
/db_xref="GI:321497515"
/translation="LLILFCTFTATYADTICIGYHANNSTDTVDTVLEKNVTVTHSVN
LLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECESLISKKSWSYIVETPNPENGA
CYPGEFADYEELREQLSSVSSFERFEIFPKESSWPNHTATGVSASCSHNGERSFYRNL
IWLTVKNGLYPNLSKSYENDKEKEVLILWGIHHPPNIENQRTLYHTENAYVSVVSSHY
SGRFTPEITKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPWYAFTLSRGLGSG
IITSNAPMDECDSKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIP
SIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQESTQNAINGITNKVN
SVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFH
DSNVKSLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYYEESKLN
REKIDGVKLDSMGVYRILAIYSTVASSLVLLVSLGAISFWMCSNGSLQCRICI"
sig_peptide <1..39
/gene="HA"
mat_peptide 40..1017
/gene="HA"
/product="HA1"
mat_peptide 1018..1683
/gene="HA"
/product="HA2"
ORIGIN
1 ctactgatcc tgttttgtac atttacagct acatatgcgg acacaatatg tataggatac
61 catgccaaca actcaaccga cactgttgac acagtacttg aaaagaatgt gacagtgaca
121 cactctgtca acctacttga ggacagtcac aatgggaagc tgtgcctact aaagggaatt
181 gcccccctac aattgggtaa ttgcagcgtt gccggatgga tattaggaaa cccagaatgc
241 gaatcactga tttccaagaa atcatggtcc tacattgtag aaacaccaaa tcctgagaat
301 ggagcatgtt acccagggga gttcgccgac tatgaggagc taagggagca attgagttca
361 gtatcttcat ttgagagatt cgaaatattc cccaaagaaa gctcatggcc caaccacact
421 gcaaccggag tgtcagcctc atgctcccat aatggggaaa ggagttttta cagaaatctg
481 atatggctga cagtgaaaaa tggtttgtac ccgaacctga gcaagtccta tgaaaacgac
541 aaagagaaag aagtccttat actatggggt attcatcatc cgcctaacat agagaaccaa
601 aggaccctct atcacacaga aaatgcttat gtctctgtag tgtcttcaca ttatagcgga
661 agattcaccc cagaaataac caaaaggccc aaagtaagag atcaggaagg aagaatcaac
721 tattactgga ctctgctgga acccggggat acaataatat ttgaggcaaa tggaaatcta
781 atagcgccat ggtatgcttt cacactgagt agaggccttg gatcaggaat catcacctct
841 aatgcaccaa tggacgaatg tgattcgaag tgtcaaacac ctcaaggagc tataaacagc
901 agtcttcctt tccagaatgt acacccagtc acaataggag aatgtccaaa gtatgtcagg
961 agtgcaaaac taaggatggt tacaggacta aggaacatcc catccattca atccagaggt
1021 ttgtttgggg ccattgccgg tttcattgaa ggggggtgga ctggaatggt agatgggtgg
1081 tatggttatc atcatcagaa tgagcaggga tctggctatg ctgcagatca agaaagcaca
1141 caaaatgcca ttaacgggat cacaaacaag gtgaattctg taattgagaa aatgaacact
1201 caattcacag ctgtgggcaa ggaattcaac aaattggaga gaaggatgga aaacttaaac
1261 aaaaaggttg atgatgggtt tctagacatt tggacataca atgcagagtt gttggttcta
1321 ctggaaaatg aaagaacttt ggacttccac gactccaatg tgaagagtct gtacgagaaa
1381 gtaaaaagcc aattaaagaa taatgctaaa gaaataggga atgggtgctt tgaattctat
1441 cacaagtgta acaacgaatg catggagagt gtgaaaaatg gaacttatga ctatccaaaa
1501 tattatgaag aatcaaagtt aaacagggaa aaaattgatg gagttaaatt ggactcaatg
1561 ggggtctatc ggattctggc gatctactca actgtcgcca gttccctggt tcttttggtc
1621 tccctggggg caatcagctt ctggatgtgt tccaatgggt ctttgcaatg tagaatatgc
1681 atctga

_________________
www.twitter.com/hniman

LOCUS CY081567 1410 bp cRNA linear VRL 04-FEB-2011
DEFINITION Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) neuraminidase
(NA) gene, complete cds.
ACCESSION CY081567
VERSION CY081567.1 GI:321497526
KEYWORDS .
SOURCE Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
ORGANISM Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1410)
AUTHORS Clement,T.J.
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1410)
AUTHORS Clement,T.J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2011) Veterinary and Biomedical Sciences, South
Dakota State University, North Campus Drive Box 2175, Brookings, SD
57007, USA
FEATURES Location/Qualifiers
source 1..1410
/organism="Influenza A virus (A/swine/South
Dakota/4/2010(H1N2))"
/mol_type="viral cRNA"
/strain="A/swine/South Dakota/4/2010"
/serotype="H1N2"
/isolation_source="Lung"
/host="swine; age Nursery"
/db_xref="taxon:981232"
/segment="6"
/lab_host="P2 passage(s)"
/country="USA"
/collection_date="28-Dec-2010"
gene 1..1410
/gene="NA"
CDS 1..1410
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="ADW93973.1"
/db_xref="GI:321497527"
/translation="MNPNQKIITIGSVSLIIATICFLMQIAILVTTVTLHFKQHDYNS
PPNNQAMLCEPTIIERNTTEIVYLTNTTIEKEICPKLAEYRNWSKPQCNITGFAPFSK
DNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNGHSNNTVHDRTPYRTLLM
NELGVPFHLGTRQVCMAWSSSSCHDGKAWLHVCITGNDNNATASFIYNGRLVDSIGSW
SKNILRTQESECVCINGTCTVVMTDGSASGKADTKILFVEEGKIVHISTLSGSAQHVE
ECSCYPRFPGVRCVCRDNWKGSNRPIVDINVKNYSIVSSYVCSGLVGDTPRKSDSVSS
SYCLDPNKEKGGHGVKGWAFDDGNDVWMGRTINETLRLGYETFKVIEGWSKANSKLQT
NRQVIVEKGDRSGYSGIFSVEGKSCINRCFYVELIRGRKEETKVWWTSNSIVVFCGTS
GTYGTGSWPDGADINLMPI"
ORIGIN
1 atgaatccaa atcagaagat aataacaatt ggctctgttt ctctcatcat tgccacaata
61 tgtttcctta tgcaaattgc tatcctagta actactgtaa cattacattt caagcagcat
121 gactacaact cccccccaaa caaccaagca atgctgtgtg aaccaacaat aatagaaaga
181 aacacaacag agattgtgta tttgaccaat accaccatag agaaagaaat atgccccaaa
241 ctagcagaat atagaaactg gtcaaagccg caatgtaaca ttacaggatt tgcacctttt
301 tctaaggaca attcaattcg gctttctgct ggtggggaca tctgggtgac aagagaacct
361 tatgtgtcat gcgatcctga caagtgttat caatttgccc ttgggcaggg aacaacatta
421 aacaacggac attcaaataa cactgtacat gataggaccc cttatcgaac cctattgatg
481 aatgaattgg gtgttccatt tcatttagga accaggcaag tgtgcatggc atggtccagc
541 tcaagttgtc acgatggaaa agcatggctg catgtttgta taactgggaa tgataacaat
601 gcaacagcta gcttcattta caatgggagg cttgtagata gtattggttc atggtccaaa
661 aatatactca gaacccagga gtcggaatgc gtctgtatca atggaacctg tacagtagta
721 atgactgatg ggagcgcttc aggaaaagct gatactaaaa tactattcgt tgaggagggg
781 aagatcgttc atattagcac attgtcagga agtgctcagc atgttgagga gtgctcctgc
841 tatcctcgat ttcctggtgt cagatgtgtc tgcagagaca actggaaagg ctccaatagg
901 cccatcgtag atataaatgt aaagaattat agcattgttt ccagttatgt atgctcagga
961 cttgttggag acacacccag aaaaagcgac agcgtcagca gtagttattg cctagatcct
1021 aacaaagaga aaggtggtca tggggtgaaa ggctgggcct ttgatgatgg aaatgacgtg
1081 tggatgggaa ggacaatcaa cgagacgtta cgcttaggtt atgaaacctt caaagtcatt
1141 gaaggctggt ccaaagctaa ctccaaatta cagacaaata ggcaagtcat agttgaaaaa
1201 ggcgacaggt ccggttattc tggtattttc tccgttgaag gtaaaagctg catcaatcgg
1261 tgcttttatg tggagttgat aaggggaagg aaagaggaaa ctaaagtctg gtggacctca
1321 aacagtattg ttgtgttttg tggcacctca ggtacatatg gaacaggctc atggcctgat
1381 ggagcggata tcaatctcat gcctatataa

_________________
www.twitter.com/hniman

LOCUS CY081568 1009 bp cRNA linear VRL 04-FEB-2011
DEFINITION Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) matrix
protein 2 (M2) and matrix protein 1 (M1) genes, complete cds.
ACCESSION CY081568
VERSION CY081568.1 GI:321497531
KEYWORDS .
SOURCE Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
ORGANISM Influenza A virus (A/swine/South Dakota/4/2010(H1N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1009)
AUTHORS Clement,T.J.
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1009)
AUTHORS Clement,T.J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2011) Veterinary and Biomedical Sciences, South
Dakota State University, North Campus Drive Box 2175, Brookings, SD
57007, USA
FEATURES Location/Qualifiers
source 1..1009
/organism="Influenza A virus (A/swine/South
Dakota/4/2010(H1N2))"
/mol_type="viral cRNA"
/strain="A/swine/South Dakota/4/2010"
/serotype="H1N2"
/isolation_source="Lung"
/host="swine; age Nursery"
/db_xref="taxon:981232"
/segment="7"
/lab_host="P2 passage(s)"
/country="USA"
/collection_date="28-Dec-2010"
gene 8..989
/gene="M2"
CDS join(8..33,722..989)
/gene="M2"
/codon_start=1
/product="matrix protein 2"
/protein_id="ADW93975.1"
/db_xref="GI:321497533"
/translation="MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITD
RLFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE"
gene 8..766
/gene="M1"
CDS 8..766
/gene="M1"
/codon_start=1
/product="matrix protein 1"
/protein_id="ADW93974.1"
/db_xref="GI:321497532"
/translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALME
WLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKK
LKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHR
SHRQMATTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRT
IGTHPSSSAGLKDDLLENLQAYQKRMGVQMQRFK"
ORIGIN
1 ttgaaagatg agtcttctaa ccgaggtcga aacgtacgtt ctttctatca tcccgtcagg
61 ccccctcaaa gccgagatcg cgcagagact ggaaagtgtc tttgcaggaa agaacacaga
121 tcttgaggct ctcatggaat ggctaaagac aagaccaatc ttgtcacctc tgactaaggg
181 aattttagga tttgtgttca cgctcaccgt gcccagtgag cgaggactgc agcgtagacg
241 ctttgtccaa aatgccctaa atgggaatgg ggacccgaac aacatggata gagcagttaa
301 actatacaag aagctcaaaa gagaaataac gttccatggg gccaaggagg tgtcactaag
361 ctattcaact ggtgcacttg ccagttgcat gggcctcata tacaacagga tgggaacagt
421 gaccacagaa gctgcttttg gtctagtgtg tgccacttgt gaacagattg ctgattcaca
481 gcatcggtct cacagacaaa tggctactac caccaatcca ctaatcaggc atgaaaacag
541 aatggtgctg gctagcacta cggcaaaggc tatggaacag atggctggat cgagtgaaca
601 ggcagcagag gccatggagg ttgctaatca gactaggcag atggtacatg caatgagaac
661 tattgggact catcctagct ccagtgctgg tctgaaagat gaccttcttg aaaatttgca
721 ggcctaccag aagcgaatgg gagtgcagat gcagcgattc aagtgatcct ctcgtcattg
781 cagcaaatat cattgggatc ttgcacctga tattgtggat tactgatcgt ctttttttca
841 aatgtattta tcgtcgcttt aaatacggtt tgaaaagagg gccttctaca gaaggagtgc
901 ctgagtccat gagggaagaa tatcaacagg aacagcagag tgctgtggat gttgacgatg
961 gtcattttgt caacatagag ctagagtaaa aaactacctt gtttctact

_________________
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The constellation of the genes in these reassortants may match the H1N2 in Argentina.

http://www.recombinomics.com/News/10291 ... ntina.html

That isolate had 6 internal genes that matched pH1N1. For the three isolates in South Dakota, the sequence of one internal gene was released and it matched pH1N1. Moreover. like the Argentinal sequence, the H1 and N2 are human. Moreover, the H1 from the South Dakota isolates are closely related to, A/swine/Minnesota/03043/2010, but only the HA sequence was released, so it could also be a reassortant with pH1N1.

_________________
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G881A pedigree

EPI298489 A/swine/South Dakota/3/2010 (A/H1N2) segment 7 (MP) 27.0 6.04065
EPI298486 A/swine/South Dakota/2/2010 (A/H1N2) segment 7 (MP) 27.0 6.04065
EPI295319 A/swine/Minnesota/165A/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI295311 A/swine/Minnesota/136B/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI295298 A/swine/Minnesota/130A/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI295286 A/swine/Minnesota/074A/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI294403 A/BRUNEI/218/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI294193 A/BRISBANE/69/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI294190 A/MALAYSIA/174/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI290127 A/CastillaLaMancha/RR4332/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI286654 A/IWATE/1031/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI286222 A/duck/Pennsylvania/467189/2006 (A/H5N9) segment 7 (MP) 27.0 6.04065
EPI278688 A/YAMAGATA/143/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI278685 A/OKINAWA/41/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI278679 A/FUKUSHIMA/105/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI278673 A/SAITAMA/84/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI278669 A/WAKAYAMA-C/19/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI277561 A/YAMAGATA/158/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI277255 A/Bangkok/INS426/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI277247 A/Bangkok/INS425/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI276922 A/BRUNEI/28/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI275257 A/thick-billed murre/Alaska/44145-199/2006 (A/H2N6) segment 7 (MP) 27.0 6.04065
EPI274988 A/Guam/NHRC0028/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI274964 A/Guam/NHRC0025/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272637 A/YAMAGUCHI/23/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272628 A/YAMAGUCHI/25/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272613 A/OSAKA/57/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272610 A/OITA/57/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272601 A/KANAGAWA/61/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272598 A/FUKUOKA-C/34/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272589 A/WAKAYAMA/34/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272580 A/KUMAMOTO/20/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI272577 A/MIE/12/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI271949 A/EAST SEPIK PROVINCE/1/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI271946 A/SIMBU/1/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI271414 A/Madrid/INS225/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI271358 A/District of Columbia/INS228/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI271326 A/Brussels/INS243/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI270000 A/Ulaanbaatar/6525/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI269869 A/Guam/2123/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI266265 A/quail/Aichi/6/2009 (A/H7N6) segment 7 (MP) 27.0 6.04065
EPI266257 A/quail/Aichi/5/2009 (A/H7N6) segment 7 (MP) 27.0 6.04065
EPI263443 A/Singapore/GP562/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI262606 A/aquatic bird/Korea/w351/2008 (A/H5N2) segment 7 (MP) 27.0 6.04065
EPI259198 A/swine/NC/19646/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI257164 A/KAGOSHIMA/56/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI256407 A/Guangxi-Bamayaozuzizhi/SWL46/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI255005 A/New York/7019/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI253085 A/Texas/JMS414/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI252965 A/Texas/JMS395/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI252957 A/Texas/JMS394/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI252693 A/Texas/46223582/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI249255 A/Wisconsin/629-D00780/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI248173 A/Wisconsin/629-D01434/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI248165 A/Wisconsin/629-D01412/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI248133 A/Wisconsin/629-D01346/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247981 A/Wisconsin/629-D00802/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247933 A/Wisconsin/629-D00629/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247861 A/Wisconsin/629-D00346/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247789 A/Wisconsin/629-D00050/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247394 A/North Carolina/01/2010 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247364 A/Minnesota/40/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI247023 A/Wisconsin/629-D02041/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI243914 A/Minnesota/38/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI243911 A/Kansas/25/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI243909 A/Vermont/28/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI243816 A/Dundgobi/9746/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI240369 A/Minnesota/21/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI240335 A/Hawaii/30/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI240329 A/Hawaii/28/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI240323 A/Florida/31/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI239650 A/Minnesota/24/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI239644 A/Vietnam/3305/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI239617 A/Wisconsin/60/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI239608 A/Minnesota/23/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI237289 A/California/VRDL68/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI236587 A/blue-winged teal/Ohio/455/2001 (A/H12N5) segment 7 (MP) 27.0 6.04065
EPI234575 A/swine/IL/32974/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI234430 A/swine/IN/27007/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI234415 A/Bayanulgii/9912/2009 (A/H1N1) segment 7 (MP) 27.0 6.04065
EPI234413 A/Unmugobi/9586/2009 (A/H1N1) segment 7 (MP) 27.0 6.04065
EPI232901 A/Hawaii/27/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI231443 A/Wisconsin/55/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI231388 A/Minnesota/17/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI231204 A/spot-billed duck/Korea/546/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI231196 A/spot-billed duck/Korea/545/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI231172 A/spot-billed duck/Korea/536/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI231164 A/spot-billed duck/Korea/534/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI231156 A/spot-billed duck/Korea/528/2008 (A/H6N8) segment 7 (MP) 27.0 6.04065
EPI231148 A/spot-billed duck/Korea/527/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI231140 A/mallard/Korea/L08-8/2008 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI227851 A/Ulaanbaatar/5974/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI227749 A/Nigeria/944/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI227711 A/Minnesota/15/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI227209 A/green-winged teal/Alberta/11383/2005 (A/H4N6) segment 7 (MP) 27.0 6.04065
EPI226483 A/YAMAGATA/313/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226347 A/OKINAWA/259/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226283 A/NIIGATA/871/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226251 A/NIIGATA-C/56/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226219 A/Mongolia/JP5759/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226211 A/Mongolia/JP5701/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226203 A/Mongolia/JP5699/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226195 A/Mongolia/JP5627/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226179 A/Mongolia/JP5581/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI226019 A/KUMAMOTO/161/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI225971 A/HOKKAIDO/200/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI225955 A/HIROSHIMA/316/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI225915 A/HIMEJI/L1/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI225883 A/FUKUOKA-C/26/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI224398 A/Zavkhan/8299/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI223769 A/Texas/45083819/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI223689 A/Texas/44302533/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI223625 A/Texas/45122774/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI223577 A/Texas/45104026/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI223274 A/Texas/42281289/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI222294 A/mallard/Interior Alaska/7MP1757/2007 (A/H3N8) segment 7 (MP) 27.0 6.04065
EPI218312 A/New York/4866/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI218296 A/New York/4844/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI217264 A/Wisconsin/52/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI217241 A/Vermont/20/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI216983 A/Minnesota/14/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI216980 A/Minnesota/13/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI214843 A/Wisconsin/629-D02473/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI214048 A/Toronto/R8557/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI185368 A/Mexico/InDRE4114/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI179006 A/Mexico/InDRE4114/2009 (A/H1N1 swl) segment 7 (MP) 27.0 6.04065
EPI178793 A/northern shoveler/California/HKWF2031/2008 (A/H7N3) segment 7 (MP) 27.0 6.04065
EPI98006 A/shorebird/Delaware/243/2000 (A/H5N4) segment 7 (MP) 27.0 6.04065
EPI98001 A/shorebird/Delaware/109/2000 (A/H5N4) segment 7 (MP) 27.0 6.04065
EPI97998 A/gull/Delaware/5/2000 (A/H5N4) segment 7 (MP) 27.0 6.04065
EPI97995 A/gull/Delaware/4/2000 (A/H5N4) segment 7 (MP) 27.0 6.04065
EPI81442 A/guinea fowl/NJ/14190-23/96 (A/H4N8) segment 7 (MP) 27.0 6.04065
EPI66492 A/duck/Shantou/12560/2005 (A/H9N2) segment 7 (MP) 27.0 6.04065
EPI52183 A/snow goose/Maryland/364/2005 (A/H6N1) segment 7 (MP) 27.0 6.04065
EPI49506 A/snow goose/Maryland/410/2005 (A/H6N1) segment 7 (MP) 27.0 6.04065

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Commentary

http://www.recombinomics.com/News/02111 ... tants.html

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Data similar to North Carolina

viewtopic.php?f=5&t=6934

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Top 100 HA sequences

CY078424.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 4 sequence 3346 3346 100% 0.0 100%
CY078421.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 4 sequence 3338 3338 100% 0.0 99%
HM778117.1 Influenza A virus (A/swine/Minnesota/03043/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3275 3275 100% 0.0 99%
CY081566.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) hemagglutinin (HA) gene, partial cds 3255 3255 99% 0.0 99%
CY045703.1 Influenza A virus (A/swine/Oklahoma/020736-1/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045679.1 Influenza A virus (A/swine/Oklahoma/020734-2/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045663.1 Influenza A virus (A/swine/Oklahoma/016179-8/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045655.1 Influenza A virus (A/swine/Oklahoma/011521-4/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045639.1 Influenza A virus (A/swine/Oklahoma/011289-8/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045631.1 Influenza A virus (A/swine/Oklahoma/011289-10/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045615.1 Influenza A virus (A/swine/Oklahoma/010710-8/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045599.1 Influenza A virus (A/swine/Oklahoma/010226-17/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045591.1 Influenza A virus (A/swine/Oklahoma/010226-16/2008(H1N2)) segment 4 sequence 3203 3203 100% 0.0 98%
CY045647.1 Influenza A virus (A/swine/Oklahoma/011521-5/2008(H1N2)) segment 4 sequence 3196 3196 100% 0.0 98%
CY045623.1 Influenza A virus (A/swine/Oklahoma/011289-9/2008(H1N2)) segment 4 sequence 3196 3196 100% 0.0 98%
CY045607.1 Influenza A virus (A/swine/Oklahoma/010710-9/2008(H1N2)) segment 4 sequence 3196 3196 100% 0.0 98%
CY045695.1 Influenza A virus (A/swine/Oklahoma/020736-2/2008(H1N2)) segment 4 sequence 3188 3188 100% 0.0 98%
CY045687.1 Influenza A virus (A/swine/Oklahoma/020734-3/2008(H1N2)) segment 4 sequence 3188 3188 100% 0.0 98%
CY045519.1 Influenza A virus (A/swine/Oklahoma/032726/2008(H1N2)) segment 4 sequence 3188 3188 100% 0.0 98%
CY045711.1 Influenza A virus (A/swine/Oklahoma/042169/2008(H1N2)) segment 4 sequence 3172 3172 100% 0.0 98%
CY045671.1 Influenza A virus (A/swine/Oklahoma/016179-9/2008(H1N2)) segment 4 sequence 3172 3172 100% 0.0 98%
CY045543.1 Influenza A virus (A/swine/Oklahoma/053259/2008(H1N2)) segment 4 sequence 3172 3172 100% 0.0 98%
CY045535.1 Influenza A virus (A/swine/Texas/050625/2008(H1N2)) segment 4 sequence 3172 3172 100% 0.0 98%
CY045527.1 Influenza A virus (A/swine/Texas/050593/2008(H1N2)) segment 4 sequence 3172 3172 100% 0.0 98%
HQ424897.1 Influenza A virus (A/swine/Oklahoma/44837-5/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3152 3152 99% 0.0 98%
HM570049.1 Influenza A virus (A/swine/Minnesota/03023/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3140 3140 100% 0.0 98%
CY086928.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) hemagglutinin (HA) gene, complete cds 3128 3128 99% 0.0 98%
HQ424888.1 Influenza A virus (A/swine/North Carolina/44837-2/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 3001 3001 99% 0.0 97%
HM193850.1 Influenza A virus (A/swine/Iowa/02998/2010(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2989 2989 99% 0.0 97%
GU480919.1 Influenza A virus (A/swine/SD/31813/2009(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2974 2974 99% 0.0 97%
HM461770.1 Influenza A virus (A/swine/Iowa/02039/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2956 2956 99% 0.0 97%
HM570050.1 Influenza A virus (A/swine/Minnesota/03024/2010(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2878 2878 91% 0.0 98%
CY002352.1 Influenza A virus (A/New York/209/2003(H1N2)) segment 4, complete sequence 2870 2870 100% 0.0 96%
CY017115.1 Influenza A virus (A/New York/C1/2003(H1N2)) segment 4, complete sequence 2863 2863 100% 0.0 96%
CY002992.1 Influenza A virus (A/New York/226/2003(H1N2)) segment 4, complete sequence 2863 2863 100% 0.0 96%
CY002656.1 Influenza A virus (A/New York/294/2003(H1N2)) segment 4, complete sequence 2863 2863 100% 0.0 96%
EU097962.1 Influenza A virus (A/Denmark/50/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2859 2859 99% 0.0 96%
EU097961.1 Influenza A virus (A/Denmark/12/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2859 2859 99% 0.0 96%
CY010076.1 Influenza A virus (A/New York/229/2003(H1N2)) segment 4, complete sequence 2855 2855 100% 0.0 96%
CY003761.1 Influenza A virus (A/New York/400/2003(H1N2)) segment 4, complete sequence 2855 2855 100% 0.0 96%
CY003368.1 Influenza A virus (A/New York/217/2002(H1N2)) segment 4, complete sequence 2855 2855 100% 0.0 96%
CY002632.1 Influenza A virus (A/New York/231/2003(H1N2)) segment 4, complete sequence 2855 2855 100% 0.0 96%
CY006403.1 Influenza A virus (A/New York/490/2003(H1N2)) segment 4, complete sequence 2855 2855 100% 0.0 96%
EU097960.1 Influenza A virus (A/Denmark/56/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2851 2851 99% 0.0 96%
CY016324.1 Influenza A virus (A/Michigan/2/2003(H1N2)) segment 4 sequence 2847 2847 100% 0.0 96%
CY006107.1 Influenza A virus (A/New York/219/2003(H1N2)) segment 4, complete sequence 2847 2847 100% 0.0 96%
CY003672.1 Influenza A virus (A/New York/482/2003(H1N2)) segment 4, complete sequence 2847 2847 100% 0.0 96%
CY002360.1 Influenza A virus (A/New York/300/2003(H1N2)) segment 4, complete sequence 2847 2847 100% 0.0 96%
CY006867.1 Influenza A virus (A/New York/211/2003(H1N2)) segment 4, complete sequence 2847 2847 100% 0.0 96%
CY006411.1 Influenza A virus (A/New York/492/2003(H1N2)) segment 4, complete sequence 2847 2847 100% 0.0 96%
CY006187.1 Influenza A virus (A/New York/491/2003(H1N2)) segment 4, complete sequence 2839 2839 100% 0.0 96%
CY006747.1 Influenza A virus (A/New York/225/2003(H1N2)) segment 4, complete sequence 2835 2835 99% 0.0 96%
FJ231791.1 Influenza A virus (A/Sachsen/678/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2833 2833 99% 0.0 96%
FJ638314.1 Influenza A virus (A/swine/IL/07003243/2007(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2831 2831 100% 0.0 96%
CY002664.1 Influenza A virus (A/New York/297/2003(H1N2)) segment 4, complete sequence 2829 2829 99% 0.0 96%
FJ231788.1 Influenza A virus (A/Baden-Wuerttemberg/20/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2827 2827 99% 0.0 96%
DQ280227.1 Influenza A virus (A/swine/Ontario/52156/03(H1N2)) hemagglutinin (HA) gene, complete cds 2825 2825 99% 0.0 96%
CY002152.1 Influenza A virus (A/New York/296/2003(H1N2)) segment 4, complete sequence 2823 2823 100% 0.0 96%
FJ231789.1 Influenza A virus (A/Baden-Wuerttemberg/129/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2819 2819 99% 0.0 96%
CY016326.1 Influenza A virus (A/Michigan/3/2003(H1N2)) segment 4 sequence 2819 2819 100% 0.0 96%
CY041903.1 Influenza A virus (A/swine/Minnesota/SG-00239/2007(H1N2)) segment 4 sequence 2811 2811 99% 0.0 96%
FJ231790.1 Influenza A virus (A/Rheinland-Pfalz/34/2003(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2803 2803 99% 0.0 95%
CY001680.2 Influenza A virus (A/New York/78/2002(H1N2)) segment 4, complete sequence 2783 2783 100% 0.0 95%
DQ280212.1 Influenza A virus (A/swine/Ontario/55383/04(H1N2)) hemagglutinin (HA) gene, complete cds 2775 2775 100% 0.0 95%
CY003769.1 Influenza A virus (A/New York/417/2002(H1N2)) segment 4, complete sequence 2775 2775 100% 0.0 95%
CY006395.1 Influenza A virus (A/New York/487/2003(H1N2)) segment 4, complete sequence 2775 2775 100% 0.0 95%
CY003696.1 Influenza A virus (A/New York/489/2003(H1N2)) segment 4, complete sequence 2767 2767 100% 0.0 95%
DQ280236.1 Influenza A virus (A/swine/Ontario/48235/04(H1N2)) hemagglutinin (HA) gene, complete cds 2767 2767 100% 0.0 95%
CY006387.1 Influenza A virus (A/New York/481/2003(H1N2)) segment 4, complete sequence 2759 2759 100% 0.0 95%
FJ231787.1 Influenza A virus (A/Sachsen/11.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2755 2755 99% 0.0 95%
FJ231786.1 Influenza A virus (A/Sachsen/2005.03.02/2002(H1N2)) segment 4 hemagglutinin (HA) gene, complete cds 2755 2755 99% 0.0 95%
EU097959.1 Influenza A virus (A/Denmark/86/2003(H1N2)) hemagglutinin (HA) gene, complete cds 2732 2732 99% 0.0 95%
HM461802.1 Influenza A virus (A/swine/Minnesota/02011/2008(H1N2)) segment 4 hemagglutinin (HA) gene, partial cds 2716 2716 99% 0.0 95%
CY016643.1 Influenza A virus (A/New South Wales/18/1999(H1N1)) segment 4, complete sequence 2704 2704 100% 0.0 95%
EU097936.1 Influenza A virus (A/Denmark/11/2001(H1N1)) hemagglutinin (HA) gene, complete cds 2700 2700 99% 0.0 95%
CY025034.1 Influenza A virus (A/Auckland/597/2000(H1N1)) segment 4, complete sequence 2700 2700 100% 0.0 95%
CY033622.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) segment 4, complete sequence 2696 2696 100% 0.0 95%
CY017123.1 Influenza A virus (A/New South Wales/24/1999(H1N1)) segment 4, complete sequence 2696 2696 100% 0.0 95%
AY289929.1 Influenza A virus (A/New Caledonia/20/99(H1N1)) hemagglutinin (HA) gene, complete cds 2696 2696 100% 0.0 95%
CY011584.1 Influenza A virus (A/Dunedin/2/2000(H1N1)) segment 4, complete sequence 2694 2694 99% 0.0 95%
EU103824.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2692 2692 99% 0.0 95%
DQ508857.1 Influenza A virus (A/New Caledonia/20/1999(H1N1)) hemagglutinin (HA) gene, complete cds 2692 2692 99% 0.0 95%
CY040138.1 Influenza A virus (A/Taiwan/5072/1999(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY022485.1 Influenza A virus (A/Auckland/586/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY022149.1 Influenza A virus (A/Auckland/579/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY021629.1 Influenza A virus (A/Wellington/4/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY016971.1 Influenza A virus (A/Wellington/24/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY016196.1 Influenza A virus (A/Wellington/14/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY010996.2 Influenza A virus (A/Wellington/2/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY012296.1 Influenza A virus (A/Wellington/7/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY011776.1 Influenza A virus (A/Canterbury/48/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY010132.1 Influenza A virus (A/Canterbury/100/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009836.1 Influenza A virus (A/South Canterbury/59/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009812.1 Influenza A virus (A/Canterbury/78/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009796.1 Influenza A virus (A/Canterbury/79/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009780.1 Influenza A virus (A/South Canterbury/40/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009756.1 Influenza A virus (A/Canterbury/23/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009196.1 Influenza A virus (A/Canterbury/36/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009180.1 Influenza A virus (A/Canterbury/30/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%
CY009172.1 Influenza A virus (A/South Canterbury/50/2000(H1N1)) segment 4, complete sequence 2688 2688 100% 0.0 95%

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Top 100 NA sequences

CY078425.1 Influenza A virus (A/swine/South Dakota/3/2010(H1N2)) segment 6 sequence 2795 2795 100% 0.0 100%
CY078422.1 Influenza A virus (A/swine/South Dakota/2/2010(H1N2)) segment 6 sequence 2795 2795 100% 0.0 100%
CY081567.1 Influenza A virus (A/swine/South Dakota/4/2010(H1N2)) neuraminidase (NA) gene, complete cds 2740 2740 100% 0.0 99%
CY045601.1 Influenza A virus (A/swine/Oklahoma/010226-17/2008(H1N2)) segment 6 sequence 2613 2613 100% 0.0 98%
CY045705.1 Influenza A virus (A/swine/Oklahoma/020736-1/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045697.1 Influenza A virus (A/swine/Oklahoma/020736-2/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045689.1 Influenza A virus (A/swine/Oklahoma/020734-3/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045649.1 Influenza A virus (A/swine/Oklahoma/011521-5/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045641.1 Influenza A virus (A/swine/Oklahoma/011289-8/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045633.1 Influenza A virus (A/swine/Oklahoma/011289-10/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045625.1 Influenza A virus (A/swine/Oklahoma/011289-9/2008(H1N2)) segment 6 sequence 2605 2605 100% 0.0 98%
CY045609.1 Influenza A virus (A/swine/Oklahoma/010710-9/2008(H1N2)) segment 6 sequence 2597 2597 100% 0.0 98%
CY045593.1 Influenza A virus (A/swine/Oklahoma/010226-16/2008(H1N2)) segment 6 sequence 2597 2597 100% 0.0 98%
HQ424898.1 Influenza A virus (A/swine/Oklahoma/44837-5/2010(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2589 2589 100% 0.0 98%
CY045681.1 Influenza A virus (A/swine/Oklahoma/020734-2/2008(H1N2)) segment 6 sequence 2589 2589 100% 0.0 98%
CY045617.1 Influenza A virus (A/swine/Oklahoma/010710-8/2008(H1N2)) segment 6 sequence 2589 2589 100% 0.0 98%
CY045537.1 Influenza A virus (A/swine/Texas/050625/2008(H1N2)) segment 6 sequence 2589 2589 100% 0.0 98%
CY045521.1 Influenza A virus (A/swine/Oklahoma/032726/2008(H1N2)) segment 6 sequence 2587 2587 99% 0.0 98%
CY045673.1 Influenza A virus (A/swine/Oklahoma/016179-9/2008(H1N2)) segment 6 sequence 2581 2581 100% 0.0 98%
CY045665.1 Influenza A virus (A/swine/Oklahoma/016179-8/2008(H1N2)) segment 6 sequence 2581 2581 100% 0.0 98%
CY045657.1 Influenza A virus (A/swine/Oklahoma/011521-4/2008(H1N2)) segment 6 sequence 2581 2581 100% 0.0 98%
CY045529.1 Influenza A virus (A/swine/Texas/050593/2008(H1N2)) segment 6 sequence 2581 2581 100% 0.0 98%
CY045545.1 Influenza A virus (A/swine/Oklahoma/053259/2008(H1N2)) segment 6 sequence 2565 2565 100% 0.0 97%
CY045713.1 Influenza A virus (A/swine/Oklahoma/042169/2008(H1N2)) segment 6 sequence 2533 2533 100% 0.0 97%
CY045561.1 Influenza A virus (A/swine/Kansas/015252/2009(H3N2)) segment 6 sequence 2526 2526 100% 0.0 97%
CY086930.1 Influenza A virus (A/swine/Minnesota/239106/2010(H1N2)) neuraminidase (NA) gene, complete cds 2518 2518 100% 0.0 97%
CY045553.1 Influenza A virus (A/swine/Oklahoma/001142/2009(H3N2)) segment 6 sequence 2518 2518 100% 0.0 97%
HQ424889.1 Influenza A virus (A/swine/North Carolina/44837-2/2009(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2438 2438 100% 0.0 96%
EU735820.1 Influenza A virus (A/turkey/OH/313053/2004(H3N2)) neuraminidase (NA) gene, complete cds 2407 2407 100% 0.0 96%
DQ335773.1 Influenza A virus (A/turkey/Ohio/313053/04(H3N2)) neuraminidase (NA) gene, complete cds 2407 2407 100% 0.0 96%
EU735828.1 Influenza A virus (A/turkey/NC/353568/2005(H3N2)) neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
EF551055.1 Influenza A virus (A/swine/North Carolina/2003(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
EF551047.1 Influenza A virus (A/turkey/Illinois/2004(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2383 2383 100% 0.0 96%
DQ469976.1 Influenza A virus (A/swine/British Columbia/28103/2005(H3N2)) neuraminidase (NA) gene, complete cds 2381 2381 99% 0.0 96%
EU826544.2 Influenza A virus (A/swine/Quebec/4001/2005(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2367 2367 100% 0.0 96%
EU697211.1 Influenza A virus (A/turkey/North Carolina/353568/2005(H3N2)) neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
DQ469992.1 Influenza A virus (A/swine/Ontario/33853/2005(H3N2)) neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
DQ469984.1 Influenza A virus (A/swine/Manitoba/12707/2005(H3N2)) neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
DQ469960.1 Influenza A virus (A/Ontario/RV1273/2005(H3N2)) neuraminidase (NA) gene, complete cds 2359 2359 100% 0.0 96%
DQ470000.1 Influenza A virus (A/turkey/Ontario/31232/2005(H3N2)) neuraminidase (NA) gene, complete cds 2349 2349 99% 0.0 96%
GU480921.1 Influenza A virus (A/swine/SD/31813/2009(H1N2)) segment 6 neuraminidase (NA) gene, complete cds 2343 2343 100% 0.0 95%
EU743212.1 Influenza A virus (A/turkey/MN/366767/2005(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2343 2343 100% 0.0 95%
FJ519965.1 Influenza A virus (A/swine/Minnesota/1300/2007(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2335 2335 100% 0.0 95%
FJ519962.1 Influenza A virus (A/swine/Minnesota/66960/2006(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2335 2335 100% 0.0 95%
EU697206.1 Influenza A virus (A/turkey/Minnesota/366767/2005(H3N2)) neuraminidase (NA) gene, complete cds 2335 2335 100% 0.0 95%
CY013415.1 Influenza A virus (A/Waikato/31/2002(H3N2)) segment 6, complete sequence 2335 2335 100% 0.0 95%
CY013082.1 Influenza A virus (A/Wellington/9/2002(H3N2)) segment 6, complete sequence 2335 2335 100% 0.0 95%
DQ469968.1 Influenza A virus (A/swine/Alberta/14722/2005(H3N2)) neuraminidase (NA) gene, complete cds 2335 2335 100% 0.0 95%
CY011650.1 Influenza A virus (A/Waikato/21/2002(H3N2)) segment 6, complete sequence 2335 2335 100% 0.0 95%
CY000911.1 Influenza A virus (A/New York/14/2003(H3N2)) segment 6, complete sequence 2335 2335 100% 0.0 95%
FJ519964.1 Influenza A virus (A/swine/Minnesota/761/2007(H3N2)) segment 6 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU857214.1 Influenza A virus (A/Hong Kong/CUHK23111/2002(H3N2)) neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU857192.1 Influenza A virus (A/Hong Kong/CUHK21582/2002(H3N2)) neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU103836.1 Influenza A virus (A/Denmark/4/2002(H3N2)) clone 4-02 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU103825.1 Influenza A virus (A/Denmark/01/2002(H3N2)) clone 1-02 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
EU100584.1 Influenza A virus (A/Florida/23/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2327 2327 100% 0.0 95%
CY013090.1 Influenza A virus (A/Waikato/25/2002(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY001514.1 Influenza A virus (A/New York/58/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000075.1 Influenza A virus (A/New York/47/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY007733.1 Influenza A virus (A/Canterbury/56/2002(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000787.1 Influenza A virus (A/New York/46/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000371.1 Influenza A virus (A/New York/31/2004(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
CY000347.1 Influenza A virus (A/New York/15/2003(H3N2)) segment 6, complete sequence 2327 2327 100% 0.0 95%
EU100574.1 Influenza A virus (A/Washington/27/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2323 2323 100% 0.0 95%
EU100572.1 Influenza A virus (A/New Mexico/17/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2323 2323 99% 0.0 95%
EU857346.1 Influenza A virus (A/Hong Kong/CUHK6210/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU857345.1 Influenza A virus (A/Hong Kong/CUHK6206/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU857138.1 Influenza A virus (A/Hong Kong/CUHK13249/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 99% 0.0 95%
EU857137.1 Influenza A virus (A/Hong Kong/CUHK13216/2002(H3N2)) neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100586.1 Influenza A virus (A/Arizona/32/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100576.1 Influenza A virus (A/New Mexico/23/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100563.1 Influenza A virus (A/Colorado/7/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
EU100561.1 Influenza A virus (A/Arizona/43/2003(N2)) segment 6 neuraminidase (NA) gene, complete cds 2319 2319 100% 0.0 95%
CY022207.1 Influenza A virus (A/Auckland/614/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017525.1 Influenza A virus (A/Queensland/20/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017517.1 Influenza A virus (A/Queensland/18/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY017485.1 Influenza A virus (A/Queensland/11/2001(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012666.1 Influenza A virus (A/Wellington/49/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012642.1 Influenza A virus (A/Dunedin/3/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012090.1 Influenza A virus (A/Waikato/102/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012066.1 Influenza A virus (A/Wellington/34/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY012050.1 Influenza A virus (A/Waikato/52/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY011738.1 Influenza A virus (A/Wellington/25/2003(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008270.1 Influenza A virus (A/Canterbury/09/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008286.1 Influenza A virus (A/Canterbury/15/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008318.1 Influenza A virus (A/Canterbury/64/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007933.1 Influenza A virus (A/Canterbury/66/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007917.1 Influenza A virus (A/Canterbury/44/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007861.1 Influenza A virus (A/Canterbury/20/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007845.1 Influenza A virus (A/Canterbury/14/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008029.1 Influenza A virus (A/Canterbury/46/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008013.1 Influenza A virus (A/Canterbury/13/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008005.1 Influenza A virus (A/Canterbury/04/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007925.1 Influenza A virus (A/Canterbury/58/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007781.1 Influenza A virus (A/Canterbury/81/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007765.1 Influenza A virus (A/Canterbury/75/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007741.1 Influenza A virus (A/Canterbury/59/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007709.1 Influenza A virus (A/Canterbury/49/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY007685.1 Influenza A virus (A/Canterbury/41/2002(H3N2)) segment 6, complete sequence 2319 2319 100% 0.0 95%
CY008310.1 Influenza A virus (A/Canterbury/62/2002(H3N2)) segment 6, complete sequence 2315 2315 100% 0.0 95%

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