Rhiza Labs FluTracker Forum

The place to discuss the flu
It is currently Mon Jun 26, 2017 6:36 am

All times are UTC - 5 hours [ DST ]




Post new topic Reply to topic  [ 79 posts ]  Go to page Previous  1, 2, 3, 4, 5 ... 8  Next
Author Message
PostPosted: Thu Nov 18, 2010 9:00 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
neuromedia wrote:
niman wrote:
In addition to the trH3N2 sequences, the CDC also released trH1N1 and swine H1N1 in human sequences at GISAID. Included was A/Illinois/9/2007 (48F), which is used as reference sera.

Other trH1N1 sequences include A/Missouri/04/2006 (7M), A/Iowa/5/2007 (2M), A/Minnesota/03/2008 (26F), A/South Dakota/03/2008 (19M), A/Texas/14/2008 (14M), A/Iowa/02/2009 (3M), A/Minnesota/10/2009 (29F).

Are there HA samples close to pH1N1 among trH1N1, possibly related to a HA ancestor of the pH1N1 wild type HA ?

I am checking, but have my doubts. pH1N1 wasn't close to US sequences.

The PB1 sequences are distict from pH1N1. However, Illinois/09/2007 is similar to Huron, OH sequences, while Iowa/162009 is like Minnesota/10/2009 and Texas/14/2008.

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 9:08 am 
Offline

Joined: Sat Jan 30, 2010 2:44 am
Posts: 926
niman wrote:
Dingo wrote:
Sorry, I'm a bit sequenced out.

Are any of these new released ones extra ones from 2010?

Classical swine are from the 1990's. trH1N1 are from 2006-2009. These are NOT new cases, but sequences have been withheld until last night.


Thanks


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 9:38 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/11181 ... demic.html

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 10:05 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
In PB2 MN/10/2009 is almost identical to A/swine/MN/23506/2009 and close to TX/14/2008. MO/04/2006 close to A/swine/Minnesota/SG-00240/2007. MN/03/2008 close to A/swine/Iowa/2096/2008. All distict from the four trH3N2 with PB1 E618D.

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 11:53 am 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
CDC has also released full sequences from the two cases from the Huron county fair (A/Ohio/01/2007 and A/Ohio/02/2007)
Below is a widely shared PB2 polymorphism (human TR cases in bold):

EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 27.0 5.64229
EPI291802 A/Iowa/02/2009 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229

EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 27.0 5.63576

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 2:06 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
niman wrote:
CDC has also released full sequences from the two cases from the Huron county fair (A/Ohio/01/2007 and A/Ohio/02/2007)
Below is a widely shared PB2 polymorphism (human TR cases in bold):

EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 27.0 5.64229
EPI291802 A/Iowa/02/2009 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229

EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI166275 A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 27.0 5.63576

PB1 OH/01 and OH/02 are exact matches of swine sequences from fair as well as IL/09/2007.

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 2:12 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Here is another similar example

EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 27.0 5.64229
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI252943 A/Texas/JMS393/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI252799 A/Texas/JMS370/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI223791 A/Texas/45140902/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI177601 A/swine/Hong Kong/78/2003 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 27.0 5.63576

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 2:32 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
More mixing and matching in PB2 (TRs in bold)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 27.0 5.64229
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229

EPI290892 A/rock dove/Oregon/20547-004/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI290884 A/rock dove/Oregon/20547-003/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI290860 A/California gull/Washington/20371-003/2007 (A/H10N7) segment 1 (PB2) 27.0 5.63576
EPI290844 A/common murre/Oregon/20361-001/2007 (A/H10N7) segment 1 (PB2) 27.0 5.63576
EPI290828 A/northern shoveler/California/44363-062/2007 (A/H9N2) segment 1 (PB2) 27.0 5.63576
EPI290726 A/northern shoveler/Washington/44249-765/2006 (A/H10N2) segment 1 (PB2) 27.0 5.63576
EPI290702 A/northern shoveler/Washington/44249-731/2006 (A/H10N7) segment 1 (PB2) 27.0 5.63576
EPI290686 A/northern shoveler/Washington/44249-675/2006 (A/H10N2) segment 1 (PB2) 27.0 5.63576
EPI290574 A/mallard/Washington/44242-290/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI290566 A/mallard/Washington/44242-288/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI290542 A/northern shoveler/Washington/44249-604/2006 (A/H9N2) segment 1 (PB2) 27.0 5.63576
EPI290529 A/mallard/Washington/44242-264/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI290502 A/mallard/California/19524-001/2005 (A/H6N8) segment 1 (PB2) 27.0 5.63576
EPI289733 A/mallard/Alaska/44244-097/2006 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI289730 A/mallard/Alaska/44185-088/2006 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI289722 A/mallard/Alaska/44243-071/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI289721 A/mallard/Alaska/44244-130/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI289716 A/mallard/Alaska/44430-148/2008 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI289712 A/mallard/Alaska/44243-025/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI289711 A/mallard/Alaska/44244-158/2006 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI289708 A/mallard/Alaska/44300-075/2007 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI289704 A/mallard/Alaska/44187-114/2006 (A/H10N7) segment 1 (PB2) 27.0 5.63576
EPI288933 A/mallard/Alaska/44244-050/2006 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI288932 A/mallard/Alaska/44430-088/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI288553 A/swine/Argentina/CIP051-StaFeN2/2010 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI287689 A/chicken/West Bengal/239022/2010 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287681 A/chicken/West Bengal/239020/2010 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287628 A/chicken/West Bengal/148713/2009 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287627 A/chicken/West Bengal/142121/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287612 A/chicken/West Bengal/193936/2009 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287604 A/chicken/West Bengal/155505/2009 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287603 A/chicken/West Bengal/80995/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287602 A/chicken/West Bengal/81010/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287601 A/chicken/West Bengal/81760/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287600 A/chicken/West Bengal/106181/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287599 A/chicken/West Bengal/100879/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287598 A/chicken/West Bengal/82613/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287597 A/chicken/West Bengal/162642/2009 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI287596 A/chicken/West Bengal/170564/2009 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI286447 A/American widgeon/Oregon/467919/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI285702 A/mallard/Washington/456273-3/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI285701 A/Canada goose/Alaska//453648/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI285687 A/tundra swan/Alaska//480410/2007 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI285667 A/duck/Oregon/459674-3/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI283592 A/surface water/Minnesota/W07-2241/2007 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI283281 A/chicken/Bangladesh/1151-11/2010 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI283280 A/chicken/Bangladesh/1151-10/2010 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI283265 A/chicken/Bangladesh/1151-9/2010 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI280869 A/Guinea fowl/Oregon/459674-5/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280845 A/mallard/Oregon/461067-2/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280837 A/tundra swan/Alaska/462958/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280765 A/mallard/Michigan/466372-3/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280741 A/snow goose/Montana/466771-4/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280661 A/mallard/Arkansas/473507-9/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280565 A/white front goose/Alaska/446843/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280541 A/tundra swan/Alaska/450959/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI280525 A/mallard/Washington/456277-7/2006 (A/H5N2) segment 1 (PB2) 27.0 5.63576
EPI277670 A/California/WR1312P/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI275144 A/glaucous gull/Alaska/44199-006/2006 (A/H13N9) segment 1 (PB2) 27.0 5.63576
EPI275137 A/glaucous gull/Alaska/44201-161/2006 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI275133 A/king eider/Alaska/44397-858/2008 (A/H10N9) segment 1 (PB2) 27.0 5.63576
EPI275131 A/glaucous gull/Alaska/44199-097/2006 (A/H13N3) segment 1 (PB2) 27.0 5.63576
EPI275130 A/glaucous gull/Alaska/44199-104/2006 (A/H13N9) segment 1 (PB2) 27.0 5.63576
EPI275129 A/lesser snow goose/Alaska/44199-115/2006 (A/H13N9) segment 1 (PB2) 27.0 5.63576
EPI275127 A/glaucous gull/Alaska/44198-119/2006 (A/H6N1) segment 1 (PB2) 27.0 5.63576
EPI269608 A/canine/Korea/LBM412/2008 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI266774 A/chicken/Chakwal/NARC-148/2004 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI266773 A/chicken/Karachi/NARC-100/2004 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI266772 A/chicken/Chakwal/NARC-46/2003 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI266771 A/chicken/Karachi/NARC-23/2003 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI266770 A/chicken/Chakwal/NARC-35/2001 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI266393 A/chicken/Murree/NARC-1/1995 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI263009 A/blue-winged teal/Louisiana/Sg-00073/2007 (A/H10N7) segment 1 (PB2) 27.0 5.63576
EPI256128 A/Hubei-Wuchang/SWL1407/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI255440 A/crow/Assam/142119/2008 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI248970 A/northern pintail/Alaska/44430-266/2008 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI248961 A/northern pintail/Alaska/44430-058/2008 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI248947 A/northern pintail/Alaska/44421-445/2008 (A/H3N8) segment 1 (PB2) 27.0 5.63576
EPI248910 A/northern pintail/Alaska/44419-175/2008 (A/H4N6) segment 1 (PB2) 27.0 5.63576
EPI248857 A/northern pintail/Alaska/44344-824/2007 (A/H1N3) segment 1 (PB2) 27.0 5.63576
EPI248695 A/northern pintail/Alaska/44340-650/2007 (A/H1) segment 1 (PB2) 27.0 5.63576
EPI248683 A/northern pintail/Alaska/44340-503/2007 (A/H8N4) segment 1 (PB2) 27.0 5.63576
EPI248655 A/northern pintail/Alaska/44340-275/2007 (A/H4) segment 1 (PB2) 27.0 5.63576
EPI248635 A/northern pintail/Alaska/44340-211/2007 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI248620 A/northern pintail/Alaska/44340-155/2007 (A/H7N3) segment 1 (PB2) 27.0 5.63576
EPI248613 A/northern pintail/Alaska/44340-107/2007 (A/H0N6) segment 1 (PB2) 27.0 5.63576
EPI248597 A/northern pintail/Alaska/44340-054/2007 (A/H3N1) segment 1 (PB2) 27.0 5.63576
EPI248580 A/Almaty/05/1998 (A/H1N1 seasonal) segment 1 (PB2) 27.0 5.63576
EPI248573 A/Almaty/32/1998 (A/H1N1 seasonal) segment 1 (PB2) 27.0 5.63576
EPI248563 A/Alma-Ata/1417/1984 (A/H1N1 seasonal) segment 1 (PB2) 27.0 5.63576
EPI248558 A/Almaty/1044/1983 (A/H1N1 seasonal) segment 1 (PB2) 27.0 5.63576
EPI244481 A/swine/Changhua/199-3/2000 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI244290 A/duck/Tuva/01/2006 (A/H5N1) segment 1 (PB2) 27.0 5.63576
EPI243190 A/turkey/Wisconsin/1/1966 (A/H9N2) segment 1 (PB2) 27.0 5.63576
EPI242731 A/turkey/WI/1966 (A/H9N2) segment 1 (PB2) 27.0 5.63576
EPI242703 A/turkey/MN/3/1979 (A/H10N7) segment 1 (PB2) 27.0 5.63576

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 2:36 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
More mixing in PB2

EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 67.6 0.00000
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000

EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 67.6 0.00000
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 67.6 0.00000
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 67.6 0.00000
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 67.6 0.00000
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 67.6 0.00000
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 67.6 0.00000
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 67.6 0.00000

_________________
www.twitter.com/hniman


Top
 Profile  
 
PostPosted: Thu Nov 18, 2010 2:40 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 27.0 5.64229
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 27.0 5.64229
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 27.0 5.64229

EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI266737 A/Boston/142/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI256536 A/Sichuan-Ziliujing/SWL158/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI213096 A/New York/4290/2009 (A/H1N1 swl) segment 1 (PB2) 27.0 5.63576
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 27.0 5.63576
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI166279 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI164140 A/swine/Korea/CY10/2007 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI164138 A/swine/Korea/CY07/2007 (A/H3N2) segment 1 (PB2) 27.0 5.63576
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI100055 A/swine/Ontario/53518/03 (A/H1N1) segment 1 (PB2) 27.0 5.63576
EPI88436 A/pintail duck/ALB/584/1984 (A/H10N6) segment 1 (PB2) 27.0 5.63576
EPI88419 A/mallard duck/ALB/40/1984 (A/H10N6) segment 1 (PB2) 27.0 5.63576
EPI15282 A/Swine/Korea/CY02/02 (A/H1N2) segment 1 (PB2) 27.0 5.63576

_________________
www.twitter.com/hniman


Top
 Profile  
 
Display posts from previous:  Sort by  
Post new topic Reply to topic  [ 79 posts ]  Go to page Previous  1, 2, 3, 4, 5 ... 8  Next

All times are UTC - 5 hours [ DST ]


Who is online

Users browsing this forum: Majestic-12 [Bot] and 54 guests


You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
cron
Powered by phpBB® Forum Software © phpBB Group