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PostPosted: Tue Jun 12, 2012 6:17 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
In 2011 a novel constellation of H3N2v emerged in human cases. Five of the genes matched the dominant 2010 H3N2 genes (PB2, PA, HA, NP, NS). The other three were in 2010 H1N2 swine sequences from Ohio. The HA, NA, and MP from the Ohio swine were also in many other swine H1N2 isolates, including an H1N1pdm09 MP. However, the sequences from these other isolates were not released.

Today the USDA released a large series of swine sequences, largely from 2010 and 2011, which include a full set of sequences from several H1N2 isolates. One isolate, A/swine/Indiana/A01049964/2011, had HA. NA, and MP which matched the three 2010 Ohio genes and the NA and MP sequences from the 2011 human H3N2 cases. However, the other gene segments from the above swine isolate were also related to the other human H3N2 gene segments.

The H1 in the above isolate has evolved from 2003 H1N2 human seasonal sequences, while the other 7 gene segemnts are related to recent H3N2V sequences, raising concaerns that this constellation is silently spreading in humans.

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PostPosted: Tue Jun 12, 2012 6:21 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 250 H1 matches at GISAID

EPI338535 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 4 (HA) 3136.7 0.000000e+00 1698/1698 (100%)
EPI353703 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1691/1699 (99%)
EPI338417 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1691/1699 (99%)
EPI338416 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1691/1699 (99%)
EPI338415 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1691/1699 (99%)
EPI338414 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 4 (HA) 3092.4 0.000000e+00 1691/1699 (99%)
EPI353698 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 4 (HA) 3081.3 0.000000e+00 1689/1699 (99%)
EPI371652 A/swine/Minnesota/A01134333/2010 (A/H1N2) segment 4 (HA) 3075.8 0.000000e+00 1688/1699 (99%)
EPI371651 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 4 (HA) 3075.8 0.000000e+00 1688/1699 (99%)
EPI371656 A/swine/Minnesota/A01134339/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI371290 A/swine/Minnesota/A01134528/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI368324 A/swine/Illinois/A01047806/2011 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI368323 A/swine/Illinois/A01047805/2011 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI368322 A/swine/Illinois/A01047779/2011 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI368321 A/swine/Illinois/A01047525/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367669 A/swine/Illinois/A01047518/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367656 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367655 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367654 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367652 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367651 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367648 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367647 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367646 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI367645 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI314784 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 4 (HA) 3070.3 0.000000e+00 1687/1699 (99%)
EPI371291 A/swine/Minnesota/A01134593/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI369100 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI369097 A/swine/Illinois/A01134269/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI369096 A/swine/Illinois/A01134264/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367664 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367663 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367662 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367660 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367659 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367658 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367657 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI367653 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI353694 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI338554 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI338419 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI324858 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI281213 A/swine/Minnesota/03043/2010 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1686/1699 (99%)
EPI369099 A/swine/Illinois/A01134433/2011 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1685/1699 (99%)
EPI369098 A/swine/Illinois/A01134426/2011 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1685/1699 (99%)
EPI367661 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1685/1699 (99%)
EPI353706 A/swine/Iowa/A01202770/2011 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1685/1699 (99%)
EPI353700 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1685/1699 (99%)
EPI369104 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 4 (HA) 3055.5 0.000000e+00 1684/1699 (99%)
EPI369110 A/swine/Illinois/A01134738/2011 (A/H1N2) segment 4 (HA) 3053.6 0.000000e+00 1684/1699 (99%)
EPI369109 A/swine/Illinois/A01134736/2011 (A/H1N2) segment 4 (HA) 3053.6 0.000000e+00 1684/1699 (99%)
EPI369103 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 4 (HA) 3053.6 0.000000e+00 1684/1699 (99%)
EPI353707 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 4 (HA) 3053.6 0.000000e+00 1684/1699 (99%)
EPI369095 A/swine/Illinois/A01116947/2011 (A/H1N2) segment 4 (HA) 3049.9 0.000000e+00 1683/1699 (99%)
EPI353699 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 4 (HA) 3049.9 0.000000e+00 1683/1699 (99%)
EPI369121 A/swine/Illinois/A01201512/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369118 A/swine/Illinois/A01201331/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369117 A/swine/Illinois/A01201330/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369114 A/swine/Illinois/A01201154/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369113 A/swine/Illinois/A01201153/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369112 A/swine/Illinois/A01201111/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369108 A/swine/Illinois/A01134729/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369107 A/swine/Illinois/A01134721/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369106 A/swine/Illinois/A01134719/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369102 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI369094 A/swine/Illinois/A01116945/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI347610 A/Minnesota/19/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI346501 A/Minnesota/19/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI338538 A/swine/Illinois/A01049952/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI338533 A/swine/Illinois/A01049969/2011 (A/H1N2) segment 4 (HA) 3048.1 0.000000e+00 1683/1699 (99%)
EPI307829 A/swine/South Dakota/4/2010 (A/H1N2) segment 4 (HA) 3046.2 0.000000e+00 1674/1686 (99%)
EPI353708 A/swine/Iowa/A01202795/2011 (A/H1N2) segment 4 (HA) 3044.4 0.000000e+00 1682/1699 (98%)
EPI327060 A/swine/Minnesota/5470-1/2010 (A/H1N2) segment 4 (HA) 3044.4 0.000000e+00 1681/1697 (99%)
EPI371261 A/swine/Illinois/A01201531/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI371260 A/swine/Illinois/A01201530/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI369120 A/swine/Illinois/A01201487/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1683/1700 (99%)
EPI369116 A/swine/Illinois/A01201287/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI369115 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI369111 A/swine/Illinois/A01201093/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI347196 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1680/1696 (99%)
EPI338534 A/swine/Illinois/A01049967/2011 (A/H1N2) segment 4 (HA) 3042.6 0.000000e+00 1682/1699 (98%)
EPI369105 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 4 (HA) 3040.7 0.000000e+00 1681/1699 (98%)
EPI327059 A/swine/Minnesota/6470-1/2010 (A/H1N2) segment 4 (HA) 3038.9 0.000000e+00 1680/1697 (98%)
EPI371264 A/swine/Illinois/A01201950/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI371262 A/swine/Illinois/A01201768/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI369101 A/swine/Illinois/A01134581/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI367666 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI367665 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI338537 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 4 (HA) 3037.0 0.000000e+00 1681/1699 (98%)
EPI298484 A/swine/South Dakota/2/2010 (A/H1N2) segment 4 (HA) 3035.2 0.000000e+00 1672/1686 (99%)
EPI338555 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 4 (HA) 3033.3 0.000000e+00 1680/1699 (98%)
EPI371263 A/swine/Illinois/A01201919/2011 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1680/1699 (98%)
EPI369119 A/swine/Illinois/A01201484/2011 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1681/1700 (98%)
EPI338550 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1680/1699 (98%)
EPI338539 A/swine/Iowa/A01049951/2011 (A/H1N2) segment 4 (HA) 3031.5 0.000000e+00 1680/1699 (98%)
EPI298487 A/swine/South Dakota/3/2010 (A/H1N2) segment 4 (HA) 3029.6 0.000000e+00 1671/1686 (99%)
EPI327057 A/swine/Minnesota/7501-1/2010 (A/H1N2) segment 4 (HA) 3027.8 0.000000e+00 1678/1697 (98%)
EPI371293 A/swine/Minnesota/A01201102/2011 (A/H1N2) segment 4 (HA) 3025.9 0.000000e+00 1679/1699 (98%)
EPI371286 A/swine/Minnesota/A01134236/2011 (A/H1N2) segment 4 (HA) 3025.9 0.000000e+00 1679/1699 (98%)
EPI367668 A/swine/Minnesota/A01047500/2010 (A/H1N2) segment 4 (HA) 3025.9 0.000000e+00 1679/1699 (98%)
EPI367644 A/swine/Illinois/A00907748/2011 (A/H1N2) segment 4 (HA) 3025.9 0.000000e+00 1680/1700 (98%)
EPI338423 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 4 (HA) 3025.9 0.000000e+00 1679/1699 (98%)
EPI371266 A/swine/Illinois/A01201985/2011 (A/H1N2) segment 4 (HA) 3022.2 0.000000e+00 1678/1699 (98%)
EPI371265 A/swine/Illinois/A01201983/2011 (A/H1N2) segment 4 (HA) 3022.2 0.000000e+00 1678/1699 (98%)
EPI367667 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 4 (HA) 3022.2 0.000000e+00 1678/1699 (98%)
EPI371272 A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 4 (HA) 3020.4 0.000000e+00 1678/1699 (98%)
EPI371285 A/swine/Minnesota/A01134226/2011 (A/H1N2) segment 4 (HA) 3016.7 0.000000e+00 1677/1699 (98%)
EPI369092 A/swine/Illinois/A01116207/2011 (A/H1N2) segment 4 (HA) 3016.7 0.000000e+00 1677/1699 (98%)
EPI371647 A/swine/Ohio/A01116890/2011 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI371287 A/swine/Minnesota/A01134248/2011 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220875 A/swine/Oklahoma/020736-1/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220859 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220843 A/swine/Oklahoma/016179-8/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220827 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220811 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220803 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220787 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220779 A/swine/Oklahoma/010226-17/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI220771 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 4 (HA) 3014.9 0.000000e+00 1677/1699 (98%)
EPI369093 A/swine/Illinois/A01116209/2011 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI353696 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI338189 A/swine/Illinois/A00907647/2011 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI316999 A/swine/Iowa/A01049071/2010 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI220835 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI220819 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI220795 A/swine/Oklahoma/010710-9/2008 (A/H1N2) segment 4 (HA) 3009.3 0.000000e+00 1676/1699 (98%)
EPI371648 A/swine/Illinois/A01116931/2011 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1675/1699 (98%)
EPI371294 A/swine/Minnesota/A01201294/2011 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI367606 A/swine/Illinois/A01243093/2012 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI338536 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI220891 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI220883 A/swine/Oklahoma/020736-2/2008 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI220867 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 4 (HA) 3003.8 0.000000e+00 1675/1699 (98%)
EPI367609 A/swine/Illinois/A01243094/2012 (A/H1N2) segment 4 (HA) 2998.2 0.000000e+00 1674/1699 (98%)
EPI220899 A/swine/Oklahoma/042169/2008 (A/H1N2) segment 4 (HA) 2998.2 0.000000e+00 1674/1699 (98%)
EPI371284 A/swine/Minnesota/A01116842/2011 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1672/1698 (98%)
EPI353697 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1673/1699 (98%)
EPI338551 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 4 (HA) 2992.7 0.000000e+00 1673/1699 (98%)
EPI220932 A/swine/Texas/050625/2008 (A/H1N2) segment 4 (HA) 2992.7 0.000000e+00 1673/1699 (98%)
EPI220924 A/swine/Texas/050593/2008 (A/H1N2) segment 4 (HA) 2992.7 0.000000e+00 1673/1699 (98%)
EPI220851 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 4 (HA) 2992.7 0.000000e+00 1673/1699 (98%)
EPI338552 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 4 (HA) 2987.2 0.000000e+00 1672/1699 (98%)
EPI327056 A/swine/Oklahoma/1701-1/2010 (A/H1N2) segment 4 (HA) 2983.5 0.000000e+00 1670/1697 (98%)
EPI292299 A/swine/Oklahoma/44837-5/2010 (A/H1N2) segment 4 (HA) 2981.6 0.000000e+00 1671/1699 (98%)
EPI220907 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 4 (HA) 2981.6 0.000000e+00 1671/1699 (98%)
EPI269541 A/swine/Minnesota/03023/2010 (A/H1N2) segment 4 (HA) 2970.5 0.000000e+00 1669/1699 (98%)
EPI371292 A/swine/Minnesota/A01134598/2010 (A/H1N2) segment 4 (HA) 2965.0 0.000000e+00 1668/1699 (98%)
EPI312697 A/swine/Minnesota/239106/2010 (A/H1N2) segment 4 (HA) 2965.0 0.000000e+00 1669/1700 (98%)
EPI327052 A/swine/Minnesota/1251-1/2010 (A/H1N2) segment 4 (HA) 2961.3 0.000000e+00 1667/1698 (98%)
EPI371282 A/swine/Minnesota/A01116140/2011 (A/H1N2) segment 4 (HA) 2953.9 0.000000e+00 1665/1698 (98%)
EPI327081 A/swine/Minnesota/0913-1/2009 (A/H1N2) segment 4 (HA) 2950.2 0.000000e+00 1664/1697 (98%)
EPI315845 A/swine/South Dakota/6/2011 (A/H1N2) segment 4 (HA) 2942.8 0.000000e+00 1664/1699 (97%)
EPI327083 A/swine/Minnesota/2992-9/2009 (A/H1N2) segment 4 (HA) 2933.6 0.000000e+00 1662/1698 (97%)
EPI371277 A/swine/Minnesota/A01076331/2010 (A/H1N2) segment 4 (HA) 2920.7 0.000000e+00 1662/1701 (97%)
EPI371271 A/swine/Kansas/A01076181/2009 (A/H1N2) segment 4 (HA) 2915.1 0.000000e+00 1659/1699 (97%)
EPI327061 A/swine/Texas/9950-1/2010 (A/H1N2) segment 4 (HA) 2905.9 0.000000e+00 1656/1697 (97%)
EPI338544 A/swine/Arkansas/A01049917/2011 (A/H1N2) segment 4 (HA) 2898.5 0.000000e+00 1656/1699 (97%)
EPI337473 A/swine/Minnesota/SG1133/2008 (A/H1N2) segment 4 (HA) 2889.3 0.000000e+00 1653/1697 (97%)
EPI371269 A/swine/Iowa/A01076157/2010 (A/H1N2) segment 4 (HA) 2887.4 0.000000e+00 1653/1698 (97%)
EPI369199 A/swine/Illinois/A01076221/2010 (A/H1N2) segment 4 (HA) 2887.4 0.000000e+00 1653/1698 (97%)
EPI369088 A/swine/Illinois/A01076223/2010 (A/H1N2) segment 4 (HA) 2887.4 0.000000e+00 1653/1698 (97%)
EPI353704 A/swine/Iowa/A01202693/2011 (A/H1N2) segment 4 (HA) 2876.4 0.000000e+00 1652/1699 (97%)
EPI371658 A/swine/Minnesota/A01134341/2010 (A/H1N2) segment 4 (HA) 2872.7 0.000000e+00 1650/1697 (97%)
EPI327054 A/swine/Minnesota/8721-1/2010 (A/H1N2) segment 4 (HA) 2872.7 0.000000e+00 1650/1697 (97%)
EPI338422 A/swine/Nebraska/A01049648/2011 (A/H1N2) segment 4 (HA) 2870.8 0.000000e+00 1651/1699 (97%)
EPI292290 A/swine/North Carolina/44837-2/2009 (A/H1N2) segment 4 (HA) 2865.3 0.000000e+00 1651/1700 (97%)
EPI371281 A/swine/Minnesota/A01076998/2010 (A/H1N2) segment 4 (HA) 2861.6 0.000000e+00 1649/1698 (97%)
EPI338429 A/swine/Oklahoma/A01049501/2011 (A/H1N2) segment 4 (HA) 2859.7 0.000000e+00 1648/1698 (97%)
EPI371279 A/swine/Minnesota/A01076763/2010 (A/H1N2) segment 4 (HA) 2856.0 0.000000e+00 1647/1697 (97%)
EPI337505 A/swine/Minnesota/02324/2008 (A/H1N2) segment 4 (HA) 2856.0 0.000000e+00 1648/1698 (97%)
EPI259432 A/swine/Iowa/02998/2010 (A/H1N2) segment 4 (HA) 2856.0 0.000000e+00 1647/1697 (97%)
EPI234590 A/swine/SD/31813/2009 (A/H1N2) segment 4 (HA) 2856.0 0.000000e+00 1647/1697 (97%)
EPI353702 A/swine/Iowa/A01049645/2011 (A/H1N2) segment 4 (HA) 2854.2 0.000000e+00 1648/1699 (96%)
EPI338430 A/swine/Oklahoma/A01049500/2011 (A/H1N2) segment 4 (HA) 2854.2 0.000000e+00 1647/1698 (96%)
EPI338424 A/swine/Iowa/A01049643/2011 (A/H1N2) segment 4 (HA) 2854.2 0.000000e+00 1648/1699 (96%)
EPI371280 A/swine/Minnesota/A01076764/2010 (A/H1N2) segment 4 (HA) 2850.5 0.000000e+00 1646/1697 (96%)
EPI371276 A/swine/Minnesota/A01076210/2010 (A/H1N2) segment 4 (HA) 2845.0 0.000000e+00 1646/1698 (96%)
EPI371273 A/swine/Minnesota/A01047913/2010 (A/H1N2) segment 4 (HA) 2845.0 0.000000e+00 1647/1699 (96%)
EPI371274 A/swine/Minnesota/A01076205/2010 (A/H1N2) segment 4 (HA) 2841.3 0.000000e+00 1644/1697 (96%)
EPI371289 A/swine/Minnesota/A01134357/2011 (A/H1N2) segment 4 (HA) 2839.4 0.000000e+00 1644/1697 (96%)
EPI371288 A/swine/Minnesota/A01134353/2011 (A/H1N2) segment 4 (HA) 2839.4 0.000000e+00 1644/1697 (96%)
EPI281272 A/swine/Iowa/02039/2008 (A/H1N2) segment 4 (HA) 2832.0 0.000000e+00 1645/1699 (96%)
EPI315842 A/swine/South Dakota/5/2011 (A/H1N2) segment 4 (HA) 2830.2 0.000000e+00 1605/1641 (97%)
EPI371283 A/swine/Minnesota/A01116285/2011 (A/H1N2) segment 4 (HA) 2806.2 0.000000e+00 1639/1698 (96%)
EPI79673 A/New York/209/2003 (A/H1N2 seasonal) segment 4 (HA) 2771.1 0.000000e+00 1634/1700 (96%)
EPI139109 A/Denmark/50/2003 (A/H1N2 seasonal) segment 4 (HA) 2765.6 0.000000e+00 1633/1700 (96%)
EPI139108 A/Denmark/12/2003 (A/H1N2 seasonal) segment 4 (HA) 2765.6 0.000000e+00 1633/1700 (96%)
EPI83134 A/New York/226/2003 (A/H1N2 seasonal) segment 4 (HA) 2765.6 0.000000e+00 1633/1700 (96%)
EPI80395 A/New York/294/2003 (A/H1N2 seasonal) segment 4 (HA) 2765.6 0.000000e+00 1633/1700 (96%)
EPI47903 A/New York/C1/2003 (A/H1N2 seasonal) segment 4 (HA) 2765.6 0.000000e+00 1633/1700 (96%)
EPI139107 A/Denmark/56/2003 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI91257 A/New York/490/2003 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI84939 A/New York/400/2003 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI84008 A/New York/217/2002 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI80338 A/New York/231/2003 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI31437 A/New York/229/2003 (A/H1N2 seasonal) segment 4 (HA) 2760.0 0.000000e+00 1632/1700 (96%)
EPI358121 A/swine/Iowa/A01203001/2011 (A/H1N2) segment 4 (HA) 2756.3 0.000000e+00 1530/1549 (98%)
EPI179354 A/swine/IL/07003243/2007 (A/H1N2) segment 4 (HA) 2754.5 0.000000e+00 1633/1702 (95%)
EPI92321 A/New York/211/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1631/1700 (95%)
EPI91276 A/New York/492/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1631/1700 (95%)
EPI90554 A/New York/219/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1631/1700 (95%)
EPI84730 A/New York/482/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1631/1700 (95%)
EPI79692 A/New York/300/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1632/1701 (95%)
EPI46051 A/Michigan/2/2003 (A/H1N2 seasonal) segment 4 (HA) 2754.5 0.000000e+00 1631/1700 (95%)
EPI182457 A/Sachsen/678/2003 (A/H1N2 seasonal) segment 4 (HA) 2748.9 0.000000e+00 1630/1700 (95%)
EPI92036 A/New York/225/2003 (A/H1N2 seasonal) segment 4 (HA) 2748.9 0.000000e+00 1630/1700 (95%)
EPI184492 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 4 (HA) 2743.4 0.000000e+00 1631/1702 (95%)
EPI182454 A/Baden-Wuerrtemberg/20/2003 (A/H1N2 seasonal) segment 4 (HA) 2743.4 0.000000e+00 1629/1700 (95%)
EPI90744 A/New York/491/2003 (A/H1N2 seasonal) segment 4 (HA) 2743.4 0.000000e+00 1627/1697 (95%)
EPI80414 A/New York/297/2003 (A/H1N2 seasonal) segment 4 (HA) 2743.4 0.000000e+00 1629/1700 (95%)
EPI182455 A/Baden-Wuerrtemberg/129/2003 (A/H1N2 seasonal) segment 4 (HA) 2737.9 0.000000e+00 1628/1700 (95%)
EPI79217 A/New York/296/2003 (A/H1N2 seasonal) segment 4 (HA) 2737.9 0.000000e+00 1629/1701 (95%)
EPI269542 A/swine/Minnesota/03024/2010 (A/H1N2) segment 4 (HA) 2734.2 0.000000e+00 1537/1565 (98%)
EPI46055 A/Michigan/3/2003 (A/H1N2 seasonal) segment 4 (HA) 2734.2 0.000000e+00 1627/1700 (95%)
EPI182456 A/Rheinland-Pfalz/34/2003 (A/H1N2 seasonal) segment 4 (HA) 2726.8 0.000000e+00 1626/1700 (95%)
EPI100086 A/swine/Ontario/52156/03 (A/H1N2) segment 4 (HA) 2726.8 0.000000e+00 1626/1700 (95%)
EPI327082 A/swine/North Carolina/0703-1/2009 (A/H1N1) segment 4 (HA) 2712.0 0.000000e+00 1625/1701 (95%)
EPI100053 A/swine/Ontario/55383/04 (A/H1N2) segment 4 (HA) 2710.2 0.000000e+00 1624/1701 (95%)
EPI54468 A/New York/78/2002 (A/H1N2 seasonal) segment 4 (HA) 2710.2 0.000000e+00 1623/1700 (95%)
EPI100107 A/swine/Ontario/48235/04 (A/H1N2) segment 4 (HA) 2704.6 0.000000e+00 1623/1701 (95%)
EPI91238 A/New York/487/2003 (A/H1N2 seasonal) segment 4 (HA) 2704.6 0.000000e+00 1622/1700 (95%)
EPI84958 A/New York/417/2002 (A/H1N2 seasonal) segment 4 (HA) 2704.6 0.000000e+00 1622/1700 (95%)
EPI327055 A/swine/Minnesota/2221-1/2010 (A/H1N2) segment 4 (HA) 2700.9 0.000000e+00 1624/1702 (95%)
EPI84787 A/New York/489/2003 (A/H1N2 seasonal) segment 4 (HA) 2699.1 0.000000e+00 1622/1701 (95%)
EPI327073 A/swine/Iowa/5373-1/2009 (A/H1N2) segment 4 (HA) 2695.4 0.000000e+00 1622/1701 (95%)
EPI182453 A/Sachsen/11.03.02/2002 (A/H1N2 seasonal) segment 4 (HA) 2693.5 0.000000e+00 1620/1700 (95%)
EPI182452 A/Sachsen/2005.03.02/2002 (A/H1N2 seasonal) segment 4 (HA) 2693.5 0.000000e+00 1620/1700 (95%)
EPI91219 A/New York/481/2003 (A/H1N2 seasonal) segment 4 (HA) 2693.5 0.000000e+00 1620/1700 (95%)
EPI139106 A/Denmark/86/2003 (A/H1N2 seasonal) segment 4 (HA) 2682.5 0.000000e+00 1620/1702 (95%)
EPI371270 A/swine/Iowa/A01076186/2010 (A/H1N2) segment 4 (HA) 2676.9 0.000000e+00 1622/1705 (95%)
EPI327064 A/swine/Iowa/6920-2/2010 (A/H1N2) segment 4 (HA) 2673.2 0.000000e+00 1617/1700 (95%)
EPI281268 A/swine/Minnesota/02011/2008 (A/H1N2) segment 4 (HA) 2669.5 0.000000e+00 1617/1700 (95%)
EPI281262 A/swine/Texas/01976/2008 (A/H1N2) segment 4 (HA) 2664.0 0.000000e+00 1612/1696 (95%)
EPI220916 A/swine/Texas/008648/2008 (A/H1N2) segment 4 (HA) 2660.3 0.000000e+00 1614/1700 (94%)
EPI139083 A/Denmark/11/2001 (A/H1N1 seasonal) segment 4 (HA) 2654.8 0.000000e+00 1613/1700 (94%)
EPI327072 A/swine/Minnesota/7373-1/2009 (A/H1N2) segment 4 (HA) 2651.1 0.000000e+00 1613/1700 (94%)
EPI259434 A/swine/Minnesota/03000/2010 (A/H1N1) segment 4 (HA) 2649.2 0.000000e+00 1615/1703 (94%)
EPI179701 A/Taiwan/5072/1999 (A/H1N1 seasonal) segment 4 (HA) 2649.2 0.000000e+00 1612/1700 (94%)
EPI68847 A/Auckland/597/2000 (A/H1N1 seasonal) segment 4 (HA) 2649.2 0.000000e+00 1613/1701 (94%)
EPI46782 A/New South Wales/18/1999 (A/H1N1 seasonal) segment 4 (HA) 2649.2 0.000000e+00 1612/1700 (94%)
EPI34940 A/Dunedin/2/2000 (A/H1N1 seasonal) segment 4 (HA) 2649.2 0.000000e+00 1612/1700 (94%)
EPI31475 A/Canterbury/43/2000 (A/H1N1 seasonal) segment 4 (HA) 2649.2 0.000000e+00 1612/1700 (94%)
EPI173706 A/New Caledonia/20/1999 (A/H1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI159392 A/New Caledonia/20/1999 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI139303 A/New Caledonia/20/1999 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI139081 A/Denmark/3/2001 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI105019 A/New Caledonia/20/1999 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI62878 A/Auckland/586/2000 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI62086 A/Auckland/579/2000 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)
EPI60909 A/Wellington/4/2000 (A/H1N1 seasonal) segment 4 (HA) 2643.7 0.000000e+00 1611/1700 (94%)

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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 N2 matches at GISAID

EPI369050 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI369039 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI369024 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2604.9 0.000000e+00 1410/1410 (100%)
EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2599.4 0.000000e+00 1409/1410 (99%)
EPI367809 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI347601 A/Indiana/10/2011 X-213 (A/H3N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2593.8 0.000000e+00 1408/1410 (99%)
EPI369161 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369158 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369066 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI369058 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367700 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367692 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367691 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367690 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367689 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367688 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367687 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367686 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367685 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367684 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367683 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367682 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367681 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367680 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367679 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367678 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367677 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367674 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367673 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367672 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI367671 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2588.3 0.000000e+00 1407/1410 (99%)
EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2586.4 0.000000e+00 1406/1410 (99%)
EPI371302 A/swine/Illinois/A01201950/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369172 A/swine/Illinois/A01201287/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369165 A/swine/Illinois/A01134736/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI369164 A/swine/Illinois/A01134729/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI368357 A/swine/Illinois/A01047525/2010 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI367694 A/swine/Illinois/A01047518/2010 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI341750 A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI341749 A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338459 A/swine/Iowa/A01049506/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI338436 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI324819 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI317026 A/swine/Indiana/A0109091/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI314798 A/swine/Pennsylvania/602170-2/2010 (A/H3N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI314786 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 6 (NA) 2582.7 0.000000e+00 1406/1410 (99%)
EPI371685 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI369171 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI333151 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2579.0 0.000000e+00 1405/1410 (99%)
EPI371686 A/swine/Minnesota/A01134333/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI371329 A/swine/Minnesota/A01134593/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369176 A/swine/Illinois/A01201487/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369167 A/swine/Illinois/A01134426/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369155 A/swine/Illinois/A01134433/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369134 A/swine/Illinois/A01134269/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI369133 A/swine/Illinois/A01134264/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368359 A/swine/Illinois/A01047805/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI368358 A/swine/Illinois/A01047779/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI351665 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1403/1407 (99%)
EPI344404 A/Indiana/08/2011 (A/H3N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338440 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI338439 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2577.2 0.000000e+00 1405/1410 (99%)
EPI371310 A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 6 (NA) 2573.5 0.000000e+00 1404/1410 (99%)
EPI371690 A/swine/Minnesota/A01134339/2010 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI371332 A/swine/Minnesota/A01201294/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI371301 A/swine/Illinois/A01201919/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369166 A/swine/Illinois/A01134738/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI369157 A/swine/Illinois/A01134581/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI368360 A/swine/Illinois/A01047806/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI353689 A/swine/Iowa/A01202794/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI353681 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI342601 A/swine/NY/A01104005/2011 (A/H3N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI341743 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338589 A/swine/Iowa/A01049846/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338587 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338453 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338445 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)
EPI338443 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 6 (NA) 2571.7 0.000000e+00 1404/1410 (99%)

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PostPosted: Tue Jun 12, 2012 6:34 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 MP matches at GISAID

EPI338513 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%)
EPI371675 A/swine/Oklahoma/A01134908/2011 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI371669 A/swine/Minnesota/A01134333/2010 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI371668 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI369074 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI367707 A/swine/Minnesota/A01240127/2011 (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI367246 A/Dundgobi/0381/2010 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI353670 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI347008 A/Hawaii/34/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI341735 A/swine/Iowa/A01049980/2011 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI341734 A/swine/Illinois/A01049981/2011 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI341733 A/swine/Iowa/A01202023/2011 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI341725 A/swine/Iowa/A01202063/2011 (A/H0N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338524 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338523 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338521 A/swine/Iowa/A01049894/2011 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338484 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338476 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338473 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338471 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338470 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI338466 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI332905 A/Pune/NIV0953725/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI324839 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI315847 A/swine/South Dakota/6/2011 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312700 A/swine/Minnesota/239106/2010 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI312684 A/swine/Minnesota/226128/2010 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI307831 A/swine/South Dakota/4/2010 (A/H1N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI295406 A/Massachusetts/03/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI295319 A/swine/Minnesota/165A/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI295311 A/swine/Minnesota/136B/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI295298 A/swine/Minnesota/130A/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI295286 A/swine/Minnesota/074A/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI286654 A/IWATE/1031/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI280290 A/Colombia/6868/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI278691 A/KOBE/181/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI278685 A/OKINAWA/41/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI278669 A/WAKAYAMA-C/19/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI277564 A/AICHI/116/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI277255 A/Bangkok/INS426/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI274988 A/Guam/NHRC0028/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI273624 A/Arizona/03/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI272640 A/YOKOHAMA/67/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI272637 A/YAMAGUCHI/23/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI272610 A/OITA/57/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI272601 A/KANAGAWA/61/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI272589 A/WAKAYAMA/34/2010 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI271414 A/Madrid/INS225/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI271358 A/District of Columbia/INS228/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI270000 A/Ulaanbaatar/6525/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI269869 A/Guam/2123/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI257164 A/KAGOSHIMA/56/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI256407 A/Guangxi-Bamayaozuzizhi/SWL46/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI255005 A/New York/7019/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI254749 A/California/VRDL85/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI253085 A/Texas/JMS414/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI252693 A/Texas/46223582/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI249255 A/Wisconsin/629-D00780/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI248173 A/Wisconsin/629-D01434/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI248165 A/Wisconsin/629-D01412/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI248133 A/Wisconsin/629-D01346/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI247981 A/Wisconsin/629-D00802/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI247861 A/Wisconsin/629-D00346/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI247023 A/Wisconsin/629-D02041/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI243816 A/Dundgobi/9746/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI240369 A/Minnesota/21/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI240335 A/Hawaii/30/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI240329 A/Hawaii/28/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI239650 A/Minnesota/24/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI239644 A/Vietnam/3305/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI239617 A/Wisconsin/60/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI239608 A/Minnesota/23/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI237289 A/California/VRDL68/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI234575 A/swine/IL/32974/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI234430 A/swine/IN/27007/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI234415 A/Bayanulgii/9912/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI234413 A/Unmugobi/9586/2009 (A/H1N1) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI232901 A/Hawaii/27/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI231443 A/Wisconsin/55/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI231388 A/Minnesota/17/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI227851 A/Ulaanbaatar/5974/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI227749 A/Nigeria/944/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI227711 A/Minnesota/15/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226347 A/OKINAWA/259/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226283 A/NIIGATA/871/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226251 A/NIIGATA-C/56/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226219 A/Mongolia/JP5759/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226211 A/Mongolia/JP5701/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226203 A/Mongolia/JP5699/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI226179 A/Mongolia/JP5581/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI225971 A/HOKKAIDO/200/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI225915 A/HIMEJI/L1/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI225883 A/FUKUOKA-C/26/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI223769 A/Texas/45083819/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI223689 A/Texas/44302533/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI223625 A/Texas/45122774/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI223577 A/Texas/45104026/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI218296 A/New York/4844/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI217264 A/Wisconsin/52/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)
EPI216983 A/Minnesota/14/2009 (A/H1N1 pdm09) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%)

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PostPosted: Tue Jun 12, 2012 6:39 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 PB2 GISAID matches

EPI342606 A/swine/NY/A01104005/2011 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%)
EPI369042 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI369034 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI369019 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI351659 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI351650 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI344394 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%)
EPI345358 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%)
EPI344402 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%)
EPI333194 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%)
EPI369061 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%)
EPI369053 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%)
EPI346437 A/Iowa/08/2011 (A/H3N2) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%)
EPI346429 A/Iowa/07/2011 (A/H3N2) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%)
EPI335607 A/Pennsylvania/09/2011 (A/H3N2) segment 1 (PB2) 4146.8 0.000000e+00 2268/2280 (99%)
EPI346421 A/Iowa/09/2011 (A/H3N2) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%)
EPI371358 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%)
EPI371374 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI302677 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%)
EPI340981 A/Indiana/10/2011 (A/H3N2) segment 1 (PB2) 4126.5 0.000000e+00 2252/2261 (99%)
EPI302688 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI302676 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI302665 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%)
EPI371369 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI371363 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%)
EPI335626 A/Indiana/08/2011 (A/H3N2) segment 1 (PB2) 4109.9 0.000000e+00 2245/2255 (99%)
EPI367848 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 1 (PB2) 4098.8 0.000000e+00 2259/2280 (99%)
EPI314788 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%)
EPI351683 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%)
EPI291868 A/Pennsylvania/14/2010 (A/H3N2) segment 1 (PB2) 4085.9 0.000000e+00 2242/2257 (99%)
EPI291841 A/Minnesota/09/2010 (A/H3N2) segment 1 (PB2) 4085.9 0.000000e+00 2246/2263 (99%)
EPI351677 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%)
EPI342685 A/Iowa/07/2011 (A/H3N2) segment 1 (PB2) 4084.1 0.000000e+00 2233/2244 (99%)
EPI312977 A/Pennsylvania/40/2010 (A/H3N2) segment 1 (PB2) 4082.2 0.000000e+00 2248/2267 (99%)
EPI291896 A/Wisconsin/12/2010 (A/H3N2) segment 1 (PB2) 4074.8 0.000000e+00 2244/2263 (99%)
EPI293962 A/Minnesota/11/2010 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2248/2270 (99%)
EPI342701 A/Iowa/09/2011 (A/H3N2) segment 1 (PB2) 4067.4 0.000000e+00 2224/2235 (99%)
EPI346498 A/Minnesota/19/2011 (A/H1N2) segment 1 (PB2) 4061.9 0.000000e+00 2243/2265 (99%)
EPI339168 A/Maine/06/2011 (A/H3N2) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%)
EPI342693 A/Iowa/08/2011 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2214/2225 (99%)
EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2240/2268 (98%)
EPI173657 A/swine/OH/511445/2007 (A/H1N1) segment 1 (PB2) 4023.1 0.000000e+00 2246/2280 (98%)
EPI291908 A/Ohio/02/2007 (A/H1N1) segment 1 (PB2) 4012.0 0.000000e+00 2238/2271 (98%)
EPI291860 A/Ohio/01/2007 (A/H1N1) segment 1 (PB2) 4012.0 0.000000e+00 2238/2271 (98%)
EPI291791 A/Illinois/09/2007 (A/H1N1) segment 1 (PB2) 4012.0 0.000000e+00 2240/2274 (98%)
EPI369069 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 1 (PB2) 4006.5 0.000000e+00 2243/2280 (98%)
EPI347209 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 1 (PB2) 4006.5 0.000000e+00 2241/2277 (98%)
EPI291825 A/Michigan/09/2007 (A/H1N2) segment 1 (PB2) 4004.7 0.000000e+00 2239/2275 (98%)
EPI337464 A/swine//Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 4001.0 0.000000e+00 2242/2280 (98%)
EPI222635 A/swine/Kansas/77778/2007 (A/H1N1) segment 1 (PB2) 4001.0 0.000000e+00 2242/2280 (98%)
EPI153511 A/swine/Ohio/24366/07 (A/H1N1) segment 1 (PB2) 3997.3 0.000000e+00 2232/2266 (98%)
EPI337408 A/swine/Minnesota/02782/2009 (A/H3N2) segment 1 (PB2) 3995.4 0.000000e+00 2241/2280 (98%)
EPI366027 A/Utah/10/2012 (A/H3N2) segment 1 (PB2) 3984.3 0.000000e+00 2226/2260 (98%)
EPI323265 A/swine/Minnesota/66853/2006 (A/H3N2) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI307926 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 1 (PB2) 3984.3 0.000000e+00 2239/2280 (98%)
EPI281307 A/swine/Ohio/02026/2008 (A/H1N1) segment 1 (PB2) 3984.3 0.000000e+00 2237/2277 (98%)
EPI323254 A/swine/Minnesota/1300/2007 (A/H3N2) segment 1 (PB2) 3982.5 0.000000e+00 2238/2279 (98%)
EPI166281 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 1 (PB2) 3982.5 0.000000e+00 2220/2252 (98%)
EPI337536 A/swine/Minnesota/001332/2006 (A/H3N2) segment 1 (PB2) 3973.3 0.000000e+00 2237/2280 (98%)
EPI185085 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 1 (PB2) 3973.3 0.000000e+00 2237/2280 (98%)
EPI323263 A/swine/Minnesota/578/2007 (A/H3N2) segment 1 (PB2) 3965.9 0.000000e+00 2235/2279 (98%)
EPI337392 A/swine/Nebraska/00722/2005 (A/H0) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%)
EPI295332 A/swine/South Dakota/152B/2009 (A/H1N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI281304 A/swine/Minnesota/02011/2008 (A/H1N2) segment 1 (PB2) 3951.1 0.000000e+00 2231/2277 (97%)
EPI184445 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%)
EPI337600 A/swine/Illinois/01917/2007 (A/H1N1) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%)
EPI337592 A/swine/Illinois/01918/2007 (A/H1N1) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%)
EPI337568 A/swine/Illinois/01981/2008 (A/H1N1) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%)
EPI337374 A/swine/Illinois/02238/2008 (A/H1N1) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%)
EPI188111 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%)
EPI337560 A/swine/Illinois/02251/2008 (A/H1N1) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI337416 A/swine/Minnesota/01862/2007 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI229379 A/turkey/OH/313053/2004 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI188115 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI101403 A/turkey/Ohio/313053/04 (A/H3N2) segment 1 (PB2) 3928.9 0.000000e+00 2229/2280 (97%)
EPI188119 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 1 (PB2) 3923.4 0.000000e+00 2227/2280 (97%)
EPI361445 A/swine/Missouri/A01047968/2010 (A/H3N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI337440 A/swine/Minnesota/02905/2009 (A/H1N1) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%)
EPI356790 A/swine/North Carolina/3793/2008 (A/H1N1) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%)
EPI227581 A/turkey/NC/353568/2005 (A/H3N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%)
EPI354996 A/swine/Illinois/A01201606/2011 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI353830 A/swine/Illinois/A01047528/2010 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%)
EPI337608 A/swine/Illinois/02510/2009 (A/H1N1) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI337576 A/swine/Illinois/02695/2009 (A/H1N1) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI337348 A/swine/Iowa/01700/2007 (A/H3N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%)
EPI281303 A/swine/Missouri/02060/2008 (A/H1N1) segment 1 (PB2) 3906.8 0.000000e+00 2225/2279 (97%)
EPI361421 A/swine/Illinois/A01047188/2010 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2225/2281 (97%)
EPI356646 A/swine/North Carolina/A01076199/2010 (A/H3N2) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337584 A/swine/Illinois/02385/2008 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337544 A/swine/Minnesota/02475/2008 (A/H1N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI98706 A/swine/MI/PU243/04 (A/H3N1) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%)
EPI337958 A/swine/Illinois/02450/2008 (A/H0) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI158873 A/turkey/MN/366767/2005 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%)
EPI103201 A/turkey/Ontario/31232/2005 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI103183 A/swine/Ontario/33853/2005 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI103147 A/swine/British Columbia/28103/2005 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI103111 A/Ontario/RV1273/2005 (A/H3N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
EPI351689 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%)
EPI337448 A/swine/Minnesota/00611/2005 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%)
EPI244298 A/Kansas/13/2009 (A/H3N2) segment 1 (PB2) 3888.3 0.000000e+00 2211/2264 (97%)

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PostPosted: Tue Jun 12, 2012 6:44 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 PB1 matches

EPI346491 A/West Virginia/06/2011 (A/H3N2) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%)
EPI369043 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI369035 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI369020 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI351651 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI342605 A/swine/NY/A01104005/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI339169 A/Maine/06/2011 (A/H3N2) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%)
EPI344403 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%)
EPI344395 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%)
EPI344387 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%)
EPI335627 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%)
EPI333150 A/Indiana/08/2011 (A/H3N2) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%)
EPI351660 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2267/2275 (99%)
EPI335608 A/Pennsylvania/09/2011 (A/H3N2) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%)
EPI340982 A/Indiana/10/2011 (A/H3N2) segment 2 (PB1) 4154.2 0.000000e+00 2263/2270 (99%)
EPI369062 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI369054 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI346438 A/Iowa/08/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI346430 A/Iowa/07/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI346422 A/Iowa/09/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI342702 A/Iowa/09/2011 (A/H3N2) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%)
EPI366028 A/Utah/10/2012 (A/H3N2) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%)
EPI347202 A/swine/Ohio/FAH2-1/2008 (A/H1N1) segment 2 (PB1) 4139.5 0.000000e+00 2261/2271 (99%)
EPI347194 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 2 (PB1) 4139.5 0.000000e+00 2261/2271 (99%)
EPI342686 A/Iowa/07/2011 (A/H3N2) segment 2 (PB1) 4132.1 0.000000e+00 2255/2264 (99%)
EPI342694 A/Iowa/08/2011 (A/H3N2) segment 2 (PB1) 4104.4 0.000000e+00 2240/2249 (99%)
EPI371349 A/swine/Iowa/A01049113/2010 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%)
EPI371354 A/swine/Iowa/A01049112/2010 (A/H3N2) segment 2 (PB1) 4078.5 0.000000e+00 2253/2275 (99%)
EPI222634 A/swine/Kansas/77778/2007 (A/H1N1) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%)
EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%)
EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3995.4 0.000000e+00 2238/2275 (98%)
EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%)
EPI166282 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 2 (PB1) 3989.9 0.000000e+00 2228/2262 (98%)
EPI337463 A/swine//Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%)
EPI295333 A/swine/South Dakota/152B/2009 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%)
EPI281291 A/swine/Missouri/02060/2008 (A/H1N1) segment 2 (PB1) 3973.3 0.000000e+00 2232/2272 (98%)
EPI337415 A/swine/Minnesota/01862/2007 (A/H3N2) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%)
EPI281290 A/swine/North Carolina/02023/2008 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2227/2271 (98%)
EPI351690 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI337591 A/swine/Illinois/01918/2007 (A/H1N1) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI101401 A/turkey/Ohio/313053/04 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%)
EPI369070 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2228/2275 (97%)
EPI337599 A/swine/Illinois/01917/2007 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI337567 A/swine/Illinois/01981/2008 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI291840 A/Minnesota/09/2010 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI188112 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI184446 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%)
EPI351684 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%)
EPI293963 A/Minnesota/11/2010 (A/H3N2) segment 2 (PB1) 3930.8 0.000000e+00 2224/2274 (97%)
EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI244299 A/Kansas/13/2009 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%)
EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3928.9 0.000000e+00 2226/2275 (97%)
EPI367849 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI351678 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI312979 A/Pennsylvania/40/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI291895 A/Wisconsin/12/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI291867 A/Pennsylvania/14/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%)
EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2225/2275 (97%)
EPI337559 A/swine/Illinois/02251/2008 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%)
EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%)
EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3914.2 0.000000e+00 2223/2275 (97%)
EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2223/2275 (97%)
EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%)
EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3910.5 0.000000e+00 2221/2273 (97%)
EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%)
EPI371359 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI346914 A/Wisconsin/28/2011 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%)
EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI302680 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%)
EPI371370 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%)
EPI337607 A/swine/Illinois/02510/2009 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI337583 A/swine/Illinois/02385/2008 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI337575 A/swine/Illinois/02695/2009 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%)
EPI188120 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 2 (PB1) 3893.9 0.000000e+00 2203/2251 (97%)
EPI371364 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 2 (PB1) 3892.0 0.000000e+00 2218/2274 (97%)
EPI371375 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI337503 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%)
EPI302668 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%)
EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%)
EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3886.5 0.000000e+00 2218/2275 (97%)
EPI166251 A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 2 (PB1) 3886.5 0.000000e+00 2211/2264 (97%)
EPI337471 A/swine/Minnesota/01358/2006 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%)
EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2219/2276 (97%)
EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI103149 A/swine/British Columbia/28103/2005 (A/H3N2) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%)
EPI281295 A/swine/Ohio/02026/2008 (A/H1N1) segment 2 (PB1) 3877.2 0.000000e+00 2217/2274 (97%)
EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2217/2276 (97%)
EPI222650 A/swine/Minnesota/1145/2007 (A/H3N2) segment 2 (PB1) 3873.5 0.000000e+00 2216/2275 (97%)
EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3873.5 0.000000e+00 2217/2276 (97%)

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PostPosted: Tue Jun 12, 2012 6:48 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 PA matches

EPI371376 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%)
EPI371360 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%)
EPI371371 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%)
EPI371365 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 3 (PA) 3925.3 0.000000e+00 2142/2151 (99%)
EPI367850 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI351685 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%)
EPI351679 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI302686 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI302679 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI302667 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI291866 A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%)
EPI302674 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI291894 A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
EPI344401 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI333149 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%)
EPI335617 A/Pennsylvania/11/2011 (A/H3N2) segment 3 (PA) 3893.9 0.000000e+00 2136/2151 (99%)
EPI369063 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI369055 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI346489 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%)
EPI366026 A/Utah/10/2012 (A/H3N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%)
EPI351661 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI346497 A/Minnesota/19/2011 (A/H1N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI342604 A/swine/NY/A01104005/2011 (A/H3N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
EPI369044 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%)
EPI369021 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%)
EPI351652 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%)
EPI369036 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI344393 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI344386 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI340980 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
EPI346436 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI346428 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI346420 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI342700 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI342692 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI342684 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%)
EPI339167 A/Maine/06/2011 (A/H3N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%)
EPI335628 A/Indiana/08/2011 (A/H3N2) segment 3 (PA) 3836.6 0.000000e+00 2103/2116 (99%)
EPI369071 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%)
EPI337462 A/swine//Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3829.2 0.000000e+00 2125/2151 (98%)
EPI323255 A/swine/Minnesota/1300/2007 (A/H3N2) segment 3 (PA) 3823.7 0.000000e+00 2124/2151 (98%)
EPI222636 A/swine/Kansas/77778/2007 (A/H1N1) segment 3 (PA) 3823.7 0.000000e+00 2124/2151 (98%)
EPI337534 A/swine/Minnesota/001332/2006 (A/H3N2) segment 3 (PA) 3818.1 0.000000e+00 2124/2152 (98%)
EPI291906 A/Ohio/02/2007 (A/H1N1) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%)
EPI291789 A/Illinois/09/2007 (A/H1N1) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%)
EPI173659 A/swine/OH/511445/2007 (A/H1N1) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%)
EPI323264 A/swine/Minnesota/66853/2006 (A/H3N2) segment 3 (PA) 3812.6 0.000000e+00 2124/2153 (98%)
EPI291858 A/Ohio/01/2007 (A/H1N1) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%)
EPI347211 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 3 (PA) 3807.1 0.000000e+00 2117/2145 (98%)
EPI337414 A/swine/Minnesota/01862/2007 (A/H3N2) segment 3 (PA) 3807.1 0.000000e+00 2122/2152 (98%)
EPI337354 A/swine/Minnesota/01146/2006 (A/H3N2) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%)
EPI291823 A/Michigan/09/2007 (A/H1N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%)
EPI337380 A/swine/Minnesota/001200/2006 (A/H1N1) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%)
EPI323261 A/swine/Minnesota/578/2007 (A/H3N2) segment 3 (PA) 3796.0 0.000000e+00 2121/2153 (98%)
EPI337590 A/swine/Illinois/01918/2007 (A/H1N1) segment 3 (PA) 3790.4 0.000000e+00 2119/2152 (98%)
EPI337566 A/swine/Illinois/01981/2008 (A/H1N1) segment 3 (PA) 3790.4 0.000000e+00 2119/2152 (98%)
EPI307928 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2118/2152 (98%)
EPI185087 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 3 (PA) 3784.9 0.000000e+00 2119/2153 (98%)
EPI184447 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2118/2152 (98%)
EPI158875 A/turkey/MN/366767/2005 (A/H3N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%)
EPI166280 A/swine/Minnesota/SG-00243/2006 (A/H3N2) segment 3 (PA) 3781.2 0.000000e+00 2104/2132 (98%)
EPI347203 A/swine/Ohio/FAH2-1/2008 (A/H1N1) segment 3 (PA) 3779.4 0.000000e+00 2112/2145 (98%)
EPI337582 A/swine/Illinois/02385/2008 (A/H1N1) segment 3 (PA) 3779.4 0.000000e+00 2117/2152 (98%)
EPI295331 A/swine/South Dakota/152B/2009 (A/H1N2) segment 3 (PA) 3779.4 0.000000e+00 2117/2152 (98%)
EPI188121 A/swine/Illinois/Sg-00445/2008 (A/H1N1) segment 3 (PA) 3779.4 0.000000e+00 2117/2152 (98%)
EPI188113 A/swine/Illinois/Sg-00443/2008 (A/H1N1) segment 3 (PA) 3779.4 0.000000e+00 2117/2152 (98%)
EPI153495 A/swine/Ohio/24366/07 (A/H1N1) segment 3 (PA) 3777.5 0.000000e+00 2101/2129 (98%)
EPI337598 A/swine/Illinois/01917/2007 (A/H1N1) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%)
EPI337558 A/swine/Illinois/02251/2008 (A/H1N1) segment 3 (PA) 3773.8 0.000000e+00 2117/2153 (98%)
EPI229377 A/turkey/OH/313053/2004 (A/H3N2) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%)
EPI166283 A/swine/Illinois/SG-00244/2007 (A/H1N1) segment 3 (PA) 3772.0 0.000000e+00 2096/2123 (98%)
EPI337606 A/swine/Illinois/02510/2009 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2115/2152 (98%)
EPI337526 A/swine/Minnesota/001581/2007 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2115/2152 (98%)
EPI281283 A/swine/Ohio/02026/2008 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2114/2149 (98%)
EPI281278 A/swine/North Carolina/02023/2008 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2110/2145 (98%)
EPI188117 A/swine/Illinois/Sg-00444/2008 (A/H1N1) segment 3 (PA) 3768.3 0.000000e+00 2116/2153 (98%)
EPI337574 A/swine/Illinois/02695/2009 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%)
EPI291808 A/Iowa/05/2007 (A/H1N1) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%)
EPI101399 A/turkey/Ohio/313053/04 (A/H3N2) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%)
EPI337956 A/swine/Illinois/02450/2008 (A/H0) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI337446 A/swine/Minnesota/00611/2005 (A/H3N2) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%)
EPI166265 A/swine/Minnesota/SG-00238/2006 (A/H1N1) segment 3 (PA) 3757.2 0.000000e+00 2098/2130 (98%)
EPI228921 A/turkey/Illinois/2004 (A/H3N2) segment 3 (PA) 3751.7 0.000000e+00 2112/2152 (98%)
EPI166271 A/swine/Minnesota/SG-00240/2007 (A/H1N1) segment 3 (PA) 3751.7 0.000000e+00 2106/2143 (98%)
EPI337367 A/swine/Minnesota/00709/2005 (A/H3N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%)
EPI281276 A/swine/Nebraska/02013/2008 (A/H1N1) segment 3 (PA) 3740.6 0.000000e+00 2107/2147 (98%)
EPI98710 A/swine/MI/PU243/04 (A/H3N1) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%)
EPI351691 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI337346 A/swine/Iowa/01700/2007 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI314336 A/turkey/BC/1529-3/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI182821 A/swine/Quebec/4001/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI166274 A/swine/Minnesota/SG-00241/2007 (A/H1N1) segment 3 (PA) 3735.0 0.000000e+00 2094/2130 (98%)
EPI103205 A/turkey/Ontario/31232/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI103187 A/swine/Ontario/33853/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI103151 A/swine/British Columbia/28103/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI103133 A/swine/Alberta/14722/2005 (A/H3N2) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%)
EPI337502 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI227579 A/turkey/NC/353568/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2110/2154 (97%)
EPI103115 A/Ontario/RV1273/2005 (A/H3N2) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%)
EPI361423 A/swine/Illinois/A01047188/2010 (A/H3N2) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%)

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PostPosted: Tue Jun 12, 2012 6:50 pm 
Offline

Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 NP matches

EPI351680 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 5 (NP) 2734.2 0.000000e+00 1490/1495 (99%)
EPI351664 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 5 (NP) 2734.2 0.000000e+00 1490/1495 (99%)
EPI344390 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2734.2 0.000000e+00 1490/1495 (99%)
EPI344383 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2734.2 0.000000e+00 1490/1495 (99%)
EPI340977 A/Indiana/10/2011 (A/H3N2) segment 5 (NP) 2734.2 0.000000e+00 1490/1495 (99%)
EPI371372 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI369049 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI369038 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI369023 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI367852 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI351686 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI351654 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI339164 A/Maine/06/2011 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI312981 A/Pennsylvania/40/2010 (A/H3N2) segment 5 (NP) 2728.6 0.000000e+00 1489/1495 (99%)
EPI346917 A/Wisconsin/28/2011 (A/H1N1) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%)
EPI293966 A/Minnesota/11/2010 (A/H3N2) segment 5 (NP) 2724.9 0.000000e+00 1488/1495 (99%)
EPI291892 A/Wisconsin/12/2010 (A/H3N2) segment 5 (NP) 2724.9 0.000000e+00 1488/1495 (99%)
EPI371377 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 5 (NP) 2723.1 0.000000e+00 1488/1495 (99%)
EPI371366 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 5 (NP) 2723.1 0.000000e+00 1488/1495 (99%)
EPI371361 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 5 (NP) 2723.1 0.000000e+00 1488/1495 (99%)
EPI342602 A/swine/NY/A01104005/2011 (A/H3N2) segment 5 (NP) 2723.1 0.000000e+00 1488/1495 (99%)
EPI344398 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2717.5 0.000000e+00 1487/1495 (99%)
EPI335630 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2717.5 0.000000e+00 1487/1495 (99%)
EPI335619 A/Pennsylvania/11/2011 (A/H3N2) segment 5 (NP) 2717.5 0.000000e+00 1487/1495 (99%)
EPI333146 A/Indiana/08/2011 (A/H3N2) segment 5 (NP) 2717.5 0.000000e+00 1487/1495 (99%)
EPI291864 A/Pennsylvania/14/2010 (A/H3N2) segment 5 (NP) 2717.5 0.000000e+00 1487/1495 (99%)
EPI369072 A/swine/Iowa/A01049210/2010 (A/H1N1) segment 5 (NP) 2712.0 0.000000e+00 1486/1495 (99%)
EPI361473 A/swine/Iowa/A01049036/2010 (A/H3N2) segment 5 (NP) 2712.0 0.000000e+00 1486/1495 (99%)
EPI337039 A/swine/Iowa/A01049035/2010 (A/H3N2) segment 5 (NP) 2712.0 0.000000e+00 1486/1495 (99%)
EPI337034 A/swine/Iowa/A01049034/2010 (A/H3N2) segment 5 (NP) 2712.0 0.000000e+00 1486/1495 (99%)
EPI335611 A/Pennsylvania/09/2011 (A/H3N2) segment 5 (NP) 2712.0 0.000000e+00 1486/1495 (99%)
EPI366023 A/Utah/10/2012 (A/H3N2) segment 5 (NP) 2706.5 0.000000e+00 1485/1495 (99%)
EPI346486 A/West Virginia/06/2011 (A/H3N2) segment 5 (NP) 2706.5 0.000000e+00 1485/1495 (99%)
EPI346494 A/Minnesota/19/2011 (A/H1N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI346433 A/Iowa/08/2011 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI346425 A/Iowa/07/2011 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI346417 A/Iowa/09/2011 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI342689 A/Iowa/08/2011 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI342681 A/Iowa/07/2011 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI314792 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI302683 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI302682 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI244301 A/Kansas/13/2009 (A/H3N2) segment 5 (NP) 2700.9 0.000000e+00 1484/1495 (99%)
EPI369065 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 5 (NP) 2695.4 0.000000e+00 1483/1495 (99%)
EPI369057 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 5 (NP) 2695.4 0.000000e+00 1483/1495 (99%)
EPI302670 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 5 (NP) 2695.4 0.000000e+00 1483/1495 (99%)
EPI302671 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 5 (NP) 2689.8 0.000000e+00 1482/1495 (99%)
EPI291822 A/Michigan/09/2007 (A/H1N2) segment 5 (NP) 2689.8 0.000000e+00 1482/1495 (99%)
EPI342697 A/Iowa/09/2011 (A/H3N2) segment 5 (NP) 2688.0 0.000000e+00 1477/1488 (99%)
EPI353833 A/swine/Illinois/A01047528/2010 (A/H3N2) segment 5 (NP) 2673.2 0.000000e+00 1479/1495 (98%)
EPI337532 A/swine/Minnesota/001332/2006 (A/H3N2) segment 5 (NP) 2673.2 0.000000e+00 1479/1495 (98%)
EPI323268 A/swine/Minnesota/66853/2006 (A/H3N2) segment 5 (NP) 2673.2 0.000000e+00 1479/1495 (98%)
EPI361425 A/swine/Illinois/A01047188/2010 (A/H3N2) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI337596 A/swine/Illinois/01917/2007 (A/H1N1) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI337588 A/swine/Illinois/01918/2007 (A/H1N1) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI337412 A/swine/Minnesota/01862/2007 (A/H3N2) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI323262 A/swine/Minnesota/578/2007 (A/H3N2) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI295328 A/swine/South Dakota/152B/2009 (A/H1N2) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI184493 A/swine/Minnesota/SG-00239/2007 (A/H1N2) segment 5 (NP) 2667.7 0.000000e+00 1478/1495 (98%)
EPI367844 A/swine/Illinois/A01047014/2010 (A/H3N2) segment 5 (NP) 2664.0 0.000000e+00 1477/1495 (98%)
EPI337556 A/swine/Illinois/02251/2008 (A/H1N1) segment 5 (NP) 2662.1 0.000000e+00 1477/1495 (98%)
EPI361441 A/swine/Illinois/A01047529/2010 (A/H3N2) segment 5 (NP) 2656.6 0.000000e+00 1476/1495 (98%)
EPI353838 A/swine/Illinois/A01076719/2010 (A/H3N2) segment 5 (NP) 2656.6 0.000000e+00 1476/1495 (98%)
EPI337564 A/swine/Illinois/01981/2008 (A/H1N1) segment 5 (NP) 2656.6 0.000000e+00 1476/1495 (98%)
EPI312650 A/swine/Indiana/240218/2010 (A/H1N2) segment 5 (NP) 2656.6 0.000000e+00 1476/1495 (98%)
EPI281256 A/swine/Minnesota/02011/2008 (A/H1N2) segment 5 (NP) 2654.8 0.000000e+00 1471/1488 (98%)
EPI337580 A/swine/Illinois/02385/2008 (A/H1N1) segment 5 (NP) 2651.1 0.000000e+00 1475/1495 (98%)
EPI158879 A/turkey/MN/366767/2005 (A/H3N2) segment 5 (NP) 2651.1 0.000000e+00 1475/1495 (98%)
EPI367836 A/swine/Illinois/A01047009/2010 (A/H3N2) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI337604 A/swine/Illinois/02510/2009 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI337436 A/swine/Minnesota/02905/2009 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI337396 A/swine/Illinois/02064/2008 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI337372 A/swine/Illinois/02238/2008 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI281255 A/swine/Missouri/02060/2008 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1472/1492 (98%)
EPI255762 A/swine/MN/48683/2002 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI164042 A/swine/Korea/CAS08/2005 (A/H1N1) segment 5 (NP) 2645.5 0.000000e+00 1474/1495 (98%)
EPI347205 A/swine/Ohio/FAH2-1/2008 (A/H1N1) segment 5 (NP) 2641.8 0.000000e+00 1472/1494 (98%)
EPI337378 A/swine/Minnesota/001200/2006 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%)
EPI337359 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%)
EPI312706 A/swine/North Carolina/239108/2010 (A/H1N2) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%)
EPI281252 A/swine/Nebraska/02013/2008 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1472/1493 (98%)
EPI164041 A/swine/Korea/CAN01/2004 (A/H1N1) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%)
EPI291851 A/Missouri/04/2006 (A/H1N1) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%)
EPI351692 A/swine/Indiana/A01049349/2010 (A/H3N2) segment 5 (NP) 2634.4 0.000000e+00 1472/1495 (98%)
EPI337572 A/swine/Illinois/02695/2009 (A/H1N1) segment 5 (NP) 2634.4 0.000000e+00 1472/1495 (98%)
EPI291816 A/Iowa/16/2009 (A/H3N2) segment 5 (NP) 2634.4 0.000000e+00 1472/1495 (98%)
EPI337365 A/swine/Minnesota/00709/2005 (A/H3N2) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI337352 A/swine/Minnesota/01146/2006 (A/H3N2) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI335052 A/swine/Minnesota/6998/2003 (A/H1N1) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI323256 A/swine/Minnesota/1300/2007 (A/H3N2) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI292006 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI291993 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI291884 A/Texas/14/2008 (A/H1N1) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI168646 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 5 (NP) 2628.9 0.000000e+00 1471/1495 (98%)
EPI337540 A/swine/Minnesota/02475/2008 (A/H1N1) segment 5 (NP) 2623.4 0.000000e+00 1470/1495 (98%)
EPI292005 A/swine/Iowa/H02NJ56391/2002 (A/H1N1) segment 5 (NP) 2623.4 0.000000e+00 1470/1495 (98%)
EPI292001 A/swine/Iowa/H03G1/2003 (A/H1N1) segment 5 (NP) 2623.4 0.000000e+00 1470/1495 (98%)
EPI291995 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 5 (NP) 2623.4 0.000000e+00 1470/1495 (98%)
EPI291994 A/swine/Iowa/H03US3/2003 (A/H1N1) segment 5 (NP) 2617.8 0.000000e+00 1469/1495 (98%)
EPI281254 A/swine/North Carolina/02023/2008 (A/H1N1) segment 5 (NP) 2616.0 0.000000e+00 1464/1488 (98%)

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PostPosted: Tue Jun 12, 2012 6:55 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Top 100 NS GISAID matches

EPI371373 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI367855 A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI351688 A/swine/Indiana/A00968322/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI351682 A/swine/Indiana/A00968321/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI346495 A/Minnesota/19/2011 (A/H1N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI335614 A/Pennsylvania/09/2011 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI314794 A/swine/Minnesota/A01047613/2010 (A/H1N1) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI312978 A/Pennsylvania/40/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI293969 A/Minnesota/11/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI291889 A/Wisconsin/12/2010 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%)
EPI371378 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI371367 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI371362 A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI344399 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI342599 A/swine/NY/A01104005/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI335633 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI333147 A/Indiana/08/2011 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI302684 A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI302681 A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI302669 A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI291861 A/Pennsylvania/14/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI291834 A/Minnesota/09/2010 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI244304 A/Kansas/13/2009 (A/H3N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%)
EPI369068 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI369060 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI346434 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI346426 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI346418 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI342698 A/Iowa/09/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI342690 A/Iowa/08/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335625 A/Pennsylvania/10/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI335622 A/Pennsylvania/11/2011 (A/H3N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI291819 A/Michigan/09/2007 (A/H1N2) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%)
EPI366024 A/Utah/10/2012 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI339165 A/Maine/06/2011 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%)
EPI302672 A/swine/Pennsylvania/62170-2/2010 (A/H3N2) segment 8 (NS) 1532.0 0.000000e+00 836/839 (99%)
EPI369052 A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI369041 A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI369026 A/swine/Illinois/A00857300/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI351658 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI344391 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI344384 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI340978 A/Indiana/10/2011 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%)
EPI346487 A/West Virginia/06/2011 (A/H3N2) segment 8 (NS) 1520.9 0.000000e+00 825/826 (99%)
EPI323271 A/swine/Minnesota/66960/2006 (A/H3N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%)
EPI342682 A/Iowa/07/2011 (A/H3N2) segment 8 (NS) 1496.9 0.000000e+00 814/816 (99%)
EPI347217 A/swine/Ohio/FAH1-1/2007 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI291903 A/Ohio/02/2007 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI291854 A/Ohio/01/2007 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI173662 A/swine/OH/511445/2007 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
EPI337461 A/swine//Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI291784 A/Illinois/09/2007 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI281223 A/swine/Ohio/02026/2008 (A/H1N1) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%)
EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI15030 A/SW/IN/14810-S/01 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI15028 A/SW/IN/14810-T/01 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%)
EPI307933 A/swine/Pennsylvania/057108-1/2010 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%)
EPI291960 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291950 A/swine/Iowa/H03UWF2/2003 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)
EPI291952 A/swine/Iowa/H03LS4/2003 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI222648 A/swine/Minnesota/07002083/2007 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%)
EPI222639 A/swine/Kansas/77778/2007 (A/H1N1) segment 8 (NS) 1460.0 0.000000e+00 821/836 (98%)
EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI164075 A/swine/Korea/CAS09/2006 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI101397 A/turkey/Ohio/313053/04 (A/H3N2) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%)
EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI337360 A/swine/Minnesota/SG1138/2002 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI335025 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI291963 A/swine/Iowa/H02NJ56371/2002 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI281224 A/swine/Iowa/02039/2008 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI235275 A/swine/North Carolina/2003 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI228926 A/turkey/Illinois/2004 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI227578 A/turkey/NC/353568/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164074 A/swine/Korea/CAS07/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164073 A/swine/Korea/CAN04/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI164062 A/swine/Korea/CAS08/2005 (A/H1N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI98720 A/swine/MI/PU243/04 (A/H3N1) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI25405 A/turkey/North Carolina/12344/03 (A/H3N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI9401 A/Swine/Ohio/891/01 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%)
EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI168654 A/turkey/North Carolina/353568/2005 (A/H3N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI164061 A/swine/Korea/CAN01/2004 (A/H1N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI98736 A/swine/IN/PU542/04 (A/H3N1) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI15276 A/Swine/Korea/CY02/02 (A/H1N2) segment 8 (NS) 1448.9 0.000000e+00 820/838 (97%)
EPI255765 A/swine/MN/48683/2002 (A/H1N1) segment 8 (NS) 1447.0 0.000000e+00 819/837 (97%)
EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)
EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1443.4 0.000000e+00 819/838 (97%)

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PostPosted: Tue Jun 12, 2012 6:58 pm 
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Joined: Wed Aug 19, 2009 10:42 am
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Location: Pittsburgh, PA USA
LOCUS JX045973 2280 bp cRNA linear VRL 11-JUN-2012
DEFINITION Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2)) segment 1
polymerase PB2 (PB2) gene, complete cds.
ACCESSION JX045973
VERSION JX045973.1 GI:390135858
KEYWORDS .
SOURCE Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2))
ORGANISM Influenza A virus (A/swine/Indiana/A01049964/2011(H1N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 2280)
CONSRTM USDA Swine Surveillance
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2012) National Veterinary Services Laboratories,
USDA, 1920 Dayton Avenue, Ames, IA 50010, USA
FEATURES Location/Qualifiers
source 1..2280
/organism="Influenza A virus
(A/swine/Indiana/A01049964/2011(H1N2))"
/mol_type="viral cRNA"
/strain="A/swine/Indiana/A01049964/2011"
/serotype="H1N2"
/isolation_source="lung"
/host="swine"
/db_xref="taxon:1082419"
/segment="1"
/country="USA: IN"
/collection_date="11-May-2011"
gene 1..2280
/gene="PB2"
CDS 1..2280
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="AFL56891.1"
/db_xref="GI:390135859"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITADRRIMDMIPERNEQGQTLWSKTTDAGSDRVMVSPLAVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADP
LASLLEMCHSTQIGGIRMMDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTS
GSSVKNEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDDQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IEPIDSVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWESLKIQWSQ
DPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEG
TAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
ORIGIN
1 atggagagaa taaaagaact aagagatcta atgtcgcagt ctcgcactcg cgagatactc
61 actaagacca ctgtggacca tatggccata atcaaaaagt acacgtcagg aaggcaggag
121 aagaaccccg cactcagaat gaagtggatg atggcaatga aatacccaat tacagcagac
181 aggagaataa tggacatgat tccagagagg aatgaacaag gacaaaccct ctggagcaaa
241 acaaccgatg ctggatcgga ccgtgtgatg gtatcacccc tggccgtaac atggtggaat
301 aggaatggcc caacaacaag cacagttcac taccctaagg tatacaaaac ttatttcgaa
361 aaagtcgaaa ggttaaaaca tggtaccttt ggccctgtcc acttcagaaa tcaagttaaa
421 ataagaagga gggttgacac aaaccccggt catgcagatc tcagtgccaa ggaggcacag
481 gatgtgatca tggaagttgt tttcccaaat gaagtggggg caagaatact gacatcagag
541 tcacagctga caataacaaa agaaaagaaa gaagagctcc aggattgtaa aattgctccc
601 ttgatggtgg catacatgct agaaagagaa ttggttcgta agacgaggtt tcttccggtg
661 gctggtggaa caagcagtgt ttatattgaa gtgctgcact taactcaggg aacatgttgg
721 gaacaaatgt acactccagg aggagaagtg agaaatgatg atgttgacca aagtttgatt
781 atcgccgcta gaaacatagt aagaagagca gcagtgtcag cagacccatt agcatctctc
841 ttggaaatgt gccacagcac acaaattgga ggaataagga tgatggacat ccttagacag
901 aacccaacgg aggaacaagc cgtagacata tgcaaggcag caatggggct gaggattagc
961 tcctctttca gctttggtgg gttcaccttc aaaaggacaa gcggatcatc tgttaagaac
1021 gaagaagaag tgctcacggg caacctccaa acactgaaaa taagagtaca tgaaggatat
1081 gaggaattca caatggtcgg gagaagagca acagctattc tcagaaaagc aaccaggaga
1141 ttgatccagt taatagtaag tggaagagac gatcaatcaa ttgctgaggc aataattgtg
1201 gccatggtat tttcacaaga ggattgcatg atcaaggcag ttaggggcga tctgaacttt
1261 gtcaataggg caaaccagcg gctgaatccc atgcaccaac tcttgaggca tttccaaaag
1321 gatgcaaaag tgcttttcca gaactggggg attgaaccca tcgacagtgt aatgggaatg
1381 atcggaatat tgcctgatat gaccccaagc acggaaatgt cactgagagg tataagagtc
1441 agcaaaatgg gagtagatga atattccagt acggagagag tggtagtgag cattgaccga
1501 tttttgagag ttcgggatca acgagggaac gtactattgt cccccgaaga ggtcagcgag
1561 acacagggaa ctgagaaatt gaccataact tattcgtcat caatgatgtg ggagatcaat
1621 ggtcctgagt cagtgctggt caacacttat caatggatca taaggaactg ggaaagcttg
1681 aaaattcaat ggtcacagga tcccacgatg ttatacaaca aaatggaatt tgaaccattc
1741 cagtctcttg tccctaaggc aaccagaagt cgttacagtg gattcgtgag gacactgttc
1801 cagcaaatgc gggatgtgct tggaacattt gatactgtcc aaataataaa acttctccca
1861 tttgctgctg ctccaccgga acagagtagg atgcagttct cctcgctaac tgtgaatgta
1921 agaggatcag ggctgaggat actggtaaga ggcaattctc cagtgttcaa ttacaacaaa
1981 gcaaccaaaa ggcttacaat ccttggaaaa gatgcaggtg cattgactga agatccagat
2041 gaaggcacag ctggagtgga gtctgctgtc ctgaggggat tcctcatttt gggtaaagaa
2101 gacaagagat atggcccagc attaagcatc aatgaactga gcaatcttgc aaaaggagag
2161 aaggctaatg tgctaattgg gcaaggagac gtggtgttgg taatgaaacg gaaacgggac
2221 tctagcatac ttactgacag ccagacagcg accaaaagga ttcggatggc catcaattag

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