niman wrote:
The other MP branch for trH3N2 has the isolates from Minnesota, Iowa, and Kansas. It also has SD/1, 2010 trH1N1 swine isolate from South Dakota (as well as SD/3183, a 2009 H1N2 swine isolate that is also from South Dakota):
EPI291974 A/swine/Iowa/H03BF5/2003 (A/H3N2) segment 7 (MP) 27.0 5.67241
EPI291835 A/Minnesota/09/2010 (A/H3N2) segment 7 (MP) 27.0 5.67241
EPI291812 A/Iowa/16/2009 (A/H3N2) segment 7 (MP) 27.0 5.67241
EPI272364 A/swine/SD/1/2010 (A/H1N1) segment 7 (MP) 27.0 5.67241
EPI244303 A/Kansas/13/2009 (A/H3N2) segment 7 (MP) 27.0 5.67241
EPI234592 A/swine/SD/31813/2009 (A/H1N2) segment 7 (MP) 27.0 5.67241
EPI102093 A/chicken/Taiwan/0408/02 (A/H6N1) segment 7 (MP) 27.0 5.67241
EPI14904 A/SW/CO/17871/01 (A/H1N2) segment 7 (MP) 27.0 5.67241
EPI14882 A/SW/MN/16419/01 (A/H1N2) segment 7 (MP) 27.0 5.67241
EPI14880 A/SW/NE/18339/01 (A/H1N2) segment 7 (MP) 27.0 5.67241
EPI14870 A/SW/MN/3128/00 (A/H1N2) segment 7 (MP) 27.0 5.67241
EPI6067 A/Chicken/Hong Kong/739/94 (A/H9N2) segment 7 (MP) 27.0 5.67241
It is worth noting that for the South Dakota swine isolates, only HA, NA, and MP sequences are available.