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LOCUS AB766239 1741 bp cRNA linear VRL 08-DEC-2012 DEFINITION Influenza A virus (A/chicken/Vietnam/OIE-2215/2012(H5N2)) HA gene for hemagglutinin, complete cds. ACCESSION AB766239 VERSION AB766239.1 GI:428931002 KEYWORDS . SOURCE Influenza A virus (A/chicken/Vietnam/OIE-2215/2012(H5N2)) ORGANISM Influenza A virus (A/chicken/Vietnam/OIE-2215/2012(H5N2)) Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 AUTHORS Nishi,T., Kida,H., Sakoda,Y., Okamatsu,M., Nam,H.V., Long,N.V., Huy,C.D. and Tien,T.N. TITLE Characterization of avian influenza viruses isolated from birds in Vietnam in 2012 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1741) AUTHORS Nishi,T., Kida,H., Sakoda,Y. and Okamatsu,M. TITLE Direct Submission JOURNAL Submitted (28-NOV-2012) Contact:Tatsuya Nishi Hokkaido University, Graduate School of Veterinary Medicine; kita-ku,kita18 nishi9, Sapporo, Hokkaido 060-0818, Japan FEATURES Location/Qualifiers source 1..1741 /organism="Influenza A virus (A/chicken/Vietnam/OIE-2215/2012(H5N2))" /mol_type="viral cRNA" /strain="A/chicken/Vietnam/OIE-2215/2012" /serotype="H5N2" /host="Gallus gallus domesticus, Chicken" /db_xref="taxon:1264701" /segment="4" /country="Viet Nam" /collection_date="11-Aug-2012" gene 15..1718 /gene="HA" CDS 15..1718 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="BAM71885.1" /db_xref="GI:428931003" /translation="MEKIVLLFATTSLVKSDHICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPLCDEFTNVPEWSYIVEKANPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASLGVSAACSYQGNSSFF RNVVWLIKKDNAYPTIKKGYNNTNREDLLILWGIHHPNDEAEQTRLYQNPTTYISIGT STLNQRLVPKIATRSKINGQSGRIDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMRSEVEYGNCNTRCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPQRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCNNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGIYQILSIYSTVASSLVLAIMMAGLSLWMCSNGSLQCRIC I" ORIGIN 1 ttcactctgt caaaatggag aaaatagttc ttctctttgc aacaaccagc cttgtcaaaa 61 gcgatcatat ttgcattggt tatcatgcaa ataactcgac agagcaggtt gacacaataa 121 tggaaaagaa cgttactgtt acacatgccc aagacatact ggaaaagaca cacaacggga 181 agctctgcga tctaaatgga gtgaagcctc tgattttaaa agattgtagt gtagcaggat 241 ggctcctcgg aaatccattg tgtgacgaat tcaccaatgt gccagaatgg tcttacatag 301 tagagaaggc caatccagcc aatgacctct gttacccagg gaatttcaac gattatgaag 361 aattgaaaca cctattgagc aggataaacc attttgagaa aatacagatc atccccaaag 421 attcttggtc agatcatgaa gcctcattgg gggtgagcgc agcatgttca taccagggaa 481 attcctcctt cttcagaaat gtggtgtggc ttatcaaaaa ggacaatgca tacccaacaa 541 taaagaaagg ctacaataat accaaccgag aagatctctt gatactgtgg gggatccacc 601 atcctaatga tgaggcagag cagacaaggc tctaccaaaa cccaactacc tatatttcca 661 ttgggacttc aacactaaac cagagattgg taccaaaaat agccactaga tccaaaataa 721 acgggcaaag tggcaggata gatttcttct ggacaatttt aaaaccgaat gacgcaatcc 781 acttcgagag taatggaaat ttcattgctc cagaatatgc atacaaaatt gtcaagaagg 841 gagactccac aatcatgaga agtgaagtgg aatatggtaa ctgcaacacc aggtgtcaga 901 ctccaatagg ggcgataaac tctagtatgc cattccacaa catacaccct ctcaccatcg 961 gagaatgtcc caaatatgtg aaatcaaaca aattagtcct tgcaactggg ctcagaaata 1021 gtcctcaaag agagagaaga agaaaaagag gactgtttgg agctatagca ggttttatag 1081 agggaggatg gcagggaatg gtagatggtt ggtatgggta tcaccacagc aatgaacagg 1141 ggagtggtta cgctgcagac aaagaatcta ctcaaaaggc gatagacgga gtcaccaata 1201 aggtcaattc gatcattgac aaaatgaaca ctcagtttga ggctgtagga agggaattta 1261 ataacttaga gaggagaata gaaaatttaa acaagaagat ggaagacgga ttcctagatg 1321 tctggactta taatgctgaa cttctggttc tcatggagaa tgagagaact ctagacttcc 1381 atgattcaaa tgtcaagaac ctttacgata aggtccgact acagcttaag gataatgcaa 1441 aagagctggg aaacggttgt ttcgagttct atcacaaatg taataatgaa tgtatggaaa 1501 gtgtaagaaa cgggacgtat gactacccgc agtattcaga agaagcaaga ttaaaaagag 1561 aggaaataag tggagtaaaa ctggaatcaa taggaatcta ccaaatactg tcaatttatt 1621 caacagtggc gagttcccta gtgctggcaa tcatgatggc tggtctatct ttatggatgt 1681 gttccaacgg gtcgttacag tgcagaattt gcatttaagt ttgtgaattc agattgtagt 1741 t
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