Conversion of D225E to D225G in Italy

niman · **Posted:** Mon Feb 01, 2010 8:43 pm

Recent sequences from Pavia/Milan and Ancona had high frequencies of D225E )around 50% of samples. Toniht 41 sequences from Rome were released. The frequency if D225E was lower (8/41) and two sequences had D225G (A716G), however both were on a D225E background (T717A) and had D225E marker C940T.

Thus, like D225G in Spain and Norway, isolates in Italy have been reported with D225G on a D225E background.

niman · **Posted:** Tue Feb 02, 2010 7:24 am

LOCUS GU585441 1206 bp cRNA linear VRL 01-FEB-2010
DEFINITION Influenza A virus (A/Roma/ISS1941/2009(H1N1)) segment 4
hemagglutinin (HA) gene, partial cds.
ACCESSION GU585441
VERSION GU585441.1 GI:285016709
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/Roma/ISS1941/2009(H1N1))
ORGANISM Influenza A virus (A/Roma/ISS1941/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1206)
AUTHORS Puzelli,S., Facchini,M., Spagnolo,D., Calzoletti,L., Palmieri,A.
and Donatelli,I.
TITLE Transmission of the pandemic H1N1 2009 influenza virus presenting
HA1 gene mutation at amino acid position 222 (D222G)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1206)
AUTHORS Puzelli,S., Facchini,M., Spagnolo,D., Calzoletti,L., Palmieri,A.
and Donatelli,I.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2010) Infectious Diseases, Istituto Superiore di
Sanita, Viale Regina Elena, 299, Rome 00161, Italy
COMMENT Swine influenza A (H1N1) virus isolated during human swine flu
outbreak of 2009.
FEATURES Location/Qualifiers
source 1..1206
/organism="Influenza A virus (A/Roma/ISS1941/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Roma/ISS1941/2009"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:715091"
/segment="4"
/country="Italy"
/collection_date="25-Aug-2009"
/note="lineage: swl"
gene <1..>1206
/gene="HA"
CDS <1..>1206
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADC33196.1"
/db_xref="GI:285016710"
/translation="ANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHL
GKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSS
FERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKENSYPKLSKSYIND
KGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRGQEGR
MNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPKG
AINTSLPFQNIHSITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWT
GMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHL
EKRIENLNKK"
ORIGIN
1 gcgaacaatt caacagacac tgtagacaca gtactagaaa agaatgtaac agtaacacac
61 tctgttaacc ttctagaaga caagcataac gggaaactat gcaaactaag aggggtagcc
121 ccattgcatt tgggtaaatg taacattgct ggctggatcc tgggaaatcc agagtgtgaa
181 tcactctcca cagcaagctc atggtcctac attgtggaaa catctagttc agacaatgga
241 acgtgttacc caggagattt catcgattat gaggagctaa gagagcaatt gagctcagtg
301 tcatcatttg aaaggtttga gatattcccc aagacaagtt catggcccaa tcatgactcg
361 aacaaaggtg taacggcagc atgtcctcat gctggagcaa aaagcttcta caaaaattta
421 atatggctag ttaaaaaaga aaattcatac ccaaagctca gcaaatccta cattaatgac
481 aaagggaaag aagtcctcgt gctatggggc attcaccatc catctactag tgctgaccaa
541 caaagtctct atcagaatgc agatgcatat gtttttgtgg ggacatcaag atacagcaag
601 aagttcaagc cggaaatagc aataagaccc aaagtgaggg gacaagaagg gagaatgaac
661 tattactgga cactagtaga gccgggagac aaaataacat tcgaagcaac tggaaatcta
721 gtggtaccga gatatgcatt cgcaatggaa agaaatgctg gatctggtat tatcatttca
781 gatacaccag tccacgattg caatacaact tgtcagacac ccaagggtgc tataaacacc
841 agcctcccat ttcagaatat acattcgatc acaattggaa aatgtccaaa atatgtaaaa
901 agcacaaaat tgagactggc cacaggattg aggaatgtcc cgtctattca atctagaggc
961 ctatttgggg ccattgccgg tttcattgaa ggggggtgga cagggatggt agatggatgg
1021 tacggttatc accatcaaaa tgagcagggg tcaggatatg cagccgacct gaagagcaca
1081 cagaatgcca ttgacgagat tactaacaaa gtaaattctg ttattgaaaa gatgaataca
1141 cagttcacag cagtaggtaa agagttcaac cacctggaaa aaagaataga gaatttaaat
1201 aaaaaa

niman · **Posted:** Tue Feb 02, 2010 7:30 am

LOCUS GU585440 1266 bp cRNA linear VRL 01-FEB-2010
DEFINITION Influenza A virus (A/Roma/ISS1897/2009(H1N1)) segment 4
hemagglutinin (HA) gene, partial cds.
ACCESSION GU585440
VERSION GU585440.1 GI:285016707
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/Roma/ISS1897/2009(H1N1))
ORGANISM Influenza A virus (A/Roma/ISS1897/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1266)
AUTHORS Puzelli,S., Facchini,M., Spagnolo,D., Calzoletti,L., Palmieri,A.
and Donatelli,I.
TITLE Transmission of the pandemic H1N1 2009 influenza virus presenting
HA1 gene mutation at amino acid position 222 (D222G)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1266)
AUTHORS Puzelli,S., Facchini,M., Spagnolo,D., Calzoletti,L., Palmieri,A.
and Donatelli,I.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2010) Infectious Diseases, Istituto Superiore di
Sanita, Viale Regina Elena, 299, Rome 00161, Italy
COMMENT Swine influenza A (H1N1) virus isolated during human swine flu
outbreak of 2009.
FEATURES Location/Qualifiers
source 1..1266
/organism="Influenza A virus (A/Roma/ISS1897/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Roma/ISS1897/2009"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:715089"
/segment="4"
/country="Italy"
/collection_date="30-Oct-2009"
/note="lineage: swl"
gene <1..>1266
/gene="HA"
CDS <1..>1266
/gene="HA"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADC33195.1"
/db_xref="GI:285016708"
/translation="DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKL
RGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELR
EQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPK
LSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRP
KVRGQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCN
TTCQTPKGAINTSLPFQNIHSITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIA
GFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTA
VGKEFNHLEKRIENLNKKVDDGFLDIWTYN"
ORIGIN
1 gacacattat gtataggtta tcatgcgaac aattcaacag acactgtaga cacagtacta
61 gaaaagaatg taacagtaac acactctgtt aaccttctag aagacaagca taacgggaaa
121 ctatgcaaac taagaggggt agccccattg catttgggta aatgtaacat tgctggctgg
181 atcctgggaa atccagagtg tgaatcactc tccacagcaa gctcatggtc ctacattgtg
241 gaaacatcta gttcagacaa tggaacgtgt tacccaggag atttcatcga ttatgaggag
301 ctaagagagc aattgagctc agtgtcatca tttgaaaggt ttgagatatt ccccaagaca
361 agttcatggc ccaatcatga ctcgaacaaa ggtgtaacgg cagcatgtcc tcatgctgga
421 gcaaaaagct tctacaaaaa tttaatatgg ctagttaaaa aaggaaattc atacccaaag
481 ctcagcaaat cctacattaa tgacaaaggg aaagaagtcc tcgtgctatg gggcattcac
541 catccatcta ctagtgctga ccaacaaagt ctctatcaga atgcagatgc atatgttttt
601 gtggggacat caagatacag caagaagttc aagccggaaa tagcaataag acccaaagtg
661 aggggacaag aagggagaat gaactattac tggacactag tagagccggg agacaaaata
721 acattcgaag caactggaaa tctagtggta ccgagatatg cattcgcaat ggaaagaaat
781 gctggatctg gtattatcat ttcagataca ccagtccacg attgcaatac aacttgtcag
841 acacccaagg gtgctataaa caccagcctc ccatttcaga atatacattc gatcacaatt
901 ggaaaatgtc caaaatatgt aaaaagcaca aaattgagac tggccacagg attgaggaat
961 gtcccgtcta ttcaatctag aggcctattt ggggccattg ccggtttcat tgaagggggg
1021 tggacaggga tggtagatgg atggtacggt tatcaccatc aaaatgagca ggggtcagga
1081 tatgcagccg acctgaagag cacacagaat gccattgacg agattactaa caaagtaaat
1141 tctgttattg aaaagatgaa tacacagttc acagcagtag gtaaagagtt caaccacctg
1201 gaaaaaagaa tagagaattt aaataaaaaa gttgatgatg gtttcctgga catttggact
1261 tacaat

niman · **Posted:** Tue Feb 02, 2010 8:56 am

Commentary

http://www.recombinomics.com/News/02021 ... Italy.html

niman · **Posted:** Tue Feb 02, 2010 9:56 am

Updated D225G travel log

gb|GU585441.1| Influenza A virus (A/Roma/ISS1941/2009(H1N1)) ... 34.2 3.1
gb|GU585440.1| Influenza A virus (A/Roma/ISS1897/2009(H1N1)) ... 34.2 3.1
gb|GU562458.1| Influenza A virus (A/Karasuk/01/2010(H1N1)) se... 34.2 3.1
gb|GU562450.1| Influenza A virus (A/Perm/01/2009(H1N1)) segme... 34.2 3.1
gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 34.2 3.1
gb|CY054731.1| Influenza A virus (A/California/VRDL7/2009(H1N... 34.2 3.1
gb|GU560024.1| Influenza A virus (A/Taraz/01/2009(H1N1)) segm... 34.2 3.1
gb|GU480938.1| Influenza A virus (A/Tomsk/08/2009(H1N1)) segm... 34.2 3.1
gb|GU451254.1| Influenza A virus (A/Tver/IIV2969/2009(H1N1)) ... 34.2 3.1
gb|CY054280.1| Influenza A virus (A/Rio de Janeiro/5826/2009(... 34.2 3.1
gb|GU371263.1| Influenza A virus (A/Bryansk/IIV2971/2009(H1N1... 34.2 3.1
gb|CY053907.1| Influenza A virus (A/Argentina/HNRG16/2009(H1N... 34.2 3.1
gb|GU367327.1| Influenza A virus (A/Salekhard/01/2009(H1N1)) ... 34.2 3.1
gb|GU367317.1| Influenza A virus (A/Tomsk/07/2009(H1N1)) segm... 34.2 3.1
gb|GU367315.1| Influenza A virus (A/Abakan/02/2009(H1N1)) seg... 34.2 3.1
gb|CY053695.1| Influenza A virus (A/Catalonia/NS092145684/200... 34.2 3.1
gb|GU290190.1| Influenza A virus (A/Utah/42/2009(H1N1)) segme... 34.2 3.1
gb|CY052019.1| Influenza A virus (A/Norway/3206-3/2009(H1N1))... 34.2 3.1
gb|GU211219.1| Influenza A virus (A/Vladivostok/01/2009(H1N1)... 34.2 3.1
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 34.2 3.1
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 34.2 3.1
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 34.2 3.1
gb|CY047083.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 34.2 3.1
gb|CY047080.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 34.2 3.1
gb|CY047074.1| Influenza A virus (A/Catalonia/NS1706/2009(H1N... 34.2 3.1
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 34.2 3.1
gb|GQ915017.1| Influenza A virus (A/Sao Paulo/53206/2009(H1N1... 34.2 3.1
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 34.2 3.1
gb|GQ379822.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 34.2 3.1
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 34.2 3.1
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 34.2 3.1
gb|GQ229348.1| Influenza A virus (A/swine/Hong Kong/NS857/200... 34.2 3.1
gb|GQ229261.1| Influenza A virus (A/swine/Hong Kong/NS837/200... 34.2 3.1
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 34.2 3.1
gb|GQ200237.1| Influenza A virus (A/Georgia/01/2009(H1N1)) se... 34.2 3.1
gb|GQ162194.1| Influenza A virus (A/Mexico/3955/2009(H1N1)) s... 34.2 3.1
gb|GQ160568.1| Influenza A virus (A/New York/04/2009(H1N1)) s... 34.2 3.1
gb|GQ132145.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 34.2 3.1

niman · **Posted:** Tue Feb 02, 2010 9:59 am

Updated D225E travel log (Genbank only)

gb|GU585442.1| Influenza A virus (A/Roma/ISS3654/2009(H1N1)) ... 36.2 0.77
gb|GU585441.1| Influenza A virus (A/Roma/ISS1941/2009(H1N1)) ... 36.2 0.77
gb|GU585440.1| Influenza A virus (A/Roma/ISS1897/2009(H1N1)) ... 36.2 0.77
gb|GU585439.1| Influenza A virus (A/Roma/ISS3625/2009(H1N1)) ... 36.2 0.77
gb|GU585432.1| Influenza A virus (A/Roma/ISS239/2009(H1N1)) s... 36.2 0.77
gb|GU585431.1| Influenza A virus (A/Roma/ISS253/2009(H1N1)) s... 36.2 0.77
gb|GU585430.1| Influenza A virus (A/Roma/ISS233/2009(H1N1)) s... 36.2 0.77
gb|GU585428.1| Influenza A virus (A/Roma/ISS190/2009(H1N1)) s... 36.2 0.77
gb|GU585427.1| Influenza A virus (A/Roma/ISS188/2009(H1N1)) s... 36.2 0.77
gb|GU585406.1| Influenza A virus (A/Roma/ISS10/2009(H1N1)) se... 36.2 0.77
gb|GU459138.1| Influenza A virus (A/Pavia/50/2009(H1N1)) segm... 36.2 0.77
gb|GU459136.1| Influenza A virus (A/Pavia/187/2009(H1N1)) seg... 36.2 0.77
gb|GU459135.1| Influenza A virus (A/Pavia/80/2009(H1N1)) segm... 36.2 0.77
gb|GU459134.1| Influenza A virus (A/Pavia/58/2009(H1N1)) segm... 36.2 0.77
gb|GU459133.1| Influenza A virus (A/Pavia/45/2009(H1N1)) segm... 36.2 0.77
gb|GU459132.1| Influenza A virus (A/Pavia/61/2009(H1N1)) segm... 36.2 0.77
gb|GU459129.1| Influenza A virus (A/Pavia/12/2009(H1N1)) segm... 36.2 0.77
gb|GU459128.1| Influenza A virus (A/Pavia/186/2009(H1N1)) seg... 36.2 0.77
gb|GU459123.1| Influenza A virus (A/Pavia/59/2009(H1N1)) segm... 36.2 0.77
gb|GU459122.1| Influenza A virus (A/Pavia/60/2009(H1N1)) segm... 36.2 0.77
gb|GU459121.1| Influenza A virus (A/Pavia/52/2009(H1N1)) segm... 36.2 0.77
gb|GU459120.1| Influenza A virus (A/Pavia/43/2009(H1N1)) segm... 36.2 0.77
gb|GU459119.1| Influenza A virus (A/Pavia/44/2009(H1N1)) segm... 36.2 0.77
gb|GU459117.1| Influenza A virus (A/Pavia/42/2009(H1N1)) segm... 36.2 0.77
gb|GU459116.1| Influenza A virus (A/Pavia/16/2009(H1N1)) segm... 36.2 0.77
gb|GU459113.1| Influenza A virus (A/Pavia/15/2009(H1N1)) segm... 36.2 0.77
gb|GU459112.1| Influenza A virus (A/Pavia/13/2009(H1N1)) segm... 36.2 0.77
gb|GU459108.1| Influenza A virus (A/Pavia/57/2009(H1N1)) segm... 36.2 0.77
gb|GU459107.1| Influenza A virus (A/Pavia/18/2009(H1N1)) segm... 36.2 0.77
gb|GU459106.1| Influenza A virus (A/Pavia/19/2009(H1N1)) segm... 36.2 0.77
gb|GU459104.1| Influenza A virus (A/Pavia/83/2009(H1N1)) segm... 36.2 0.77
gb|GU459103.1| Influenza A virus (A/Pavia/65/2009(H1N1)) segm... 36.2 0.77
gb|GU459102.1| Influenza A virus (A/Pavia/74/2009(H1N1)) segm... 36.2 0.77
gb|GU459100.1| Influenza A virus (A/Pavia/69/2009(H1N1)) segm... 36.2 0.77
gb|GU459099.1| Influenza A virus (A/Pavia/70/2009(H1N1)) segm... 36.2 0.77
gb|GU459095.1| Influenza A virus (A/Pavia/67/2009(H1N1)) segm... 36.2 0.77
gb|GU459094.1| Influenza A virus (A/Pavia/76/2009(H1N1)) segm... 36.2 0.77
gb|GU459093.1| Influenza A virus (A/Pavia/71/2009(H1N1)) segm... 36.2 0.77
gb|GU459091.1| Influenza A virus (A/Pavia/81/2009(H1N1)) segm... 36.2 0.77
gb|GU459090.1| Influenza A virus (A/Pavia/82/2009(H1N1)) segm... 36.2 0.77
gb|GU459089.1| Influenza A virus (A/Pavia/78/2009(H1N1)) segm... 36.2 0.77
gb|GU459086.1| Influenza A virus (A/Pavia/77/2009(H1N1)) segm... 36.2 0.77
gb|GU459084.1| Influenza A virus (A/Pavia/68/2009(H1N1)) segm... 36.2 0.77
gb|GU451280.1| Influenza A virus (A/Milan/622/2009(H1N1)) seg... 36.2 0.77
gb|GU451277.1| Influenza A virus (A/Milan/555/2009(H1N1)) seg... 36.2 0.77
gb|GU451274.1| Influenza A virus (A/Milan/348/2009(H1N1)) seg... 36.2 0.77
gb|GU451273.1| Influenza A virus (A/Milan/326/2009(H1N1)) seg... 36.2 0.77
gb|GU451270.1| Influenza A virus (A/Milan/314/2009(H1N1)) seg... 36.2 0.77
gb|GU451269.1| Influenza A virus (A/Milan/298/2009(H1N1)) seg... 36.2 0.77
gb|GU451268.1| Influenza A virus (A/Milan/240/2009(H1N1)) seg... 36.2 0.77
gb|GU451267.1| Influenza A virus (A/Milan/295/2009(H1N1)) seg... 36.2 0.77
gb|GU451265.1| Influenza A virus (A/Milan/265/2009(H1N1)) seg... 36.2 0.77
gb|GU451264.1| Influenza A virus (A/Milan/239/2009(H1N1)) seg... 36.2 0.77
gb|GU451263.1| Influenza A virus (A/Milan/236/2009(H1N1)) seg... 36.2 0.77
gb|GU576524.1| Influenza A virus (A/Ancona/97/2009(H1N1)) seg... 36.2 0.77
gb|GU576522.1| Influenza A virus (A/Ancona/86/2009(H1N1)) seg... 36.2 0.77
gb|GU576521.1| Influenza A virus (A/Ancona/80/2009(H1N1)) seg... 36.2 0.77
gb|GU576519.1| Influenza A virus (A/Ancona/75/2009(H1N1)) seg... 36.2 0.77
gb|GU576517.1| Influenza A virus (A/Ancona/69/2009(H1N1)) seg... 36.2 0.77
gb|GU576515.1| Influenza A virus (A/Ancona/68/2009(H1N1)) seg... 36.2 0.77
gb|GU576514.1| Influenza A virus (A/Ancona/66/2009(H1N1)) seg... 36.2 0.77
gb|GU576512.1| Influenza A virus (A/Ancona/61/2009(H1N1)) seg... 36.2 0.77
gb|GU576510.1| Influenza A virus (A/Ancona/60/2009(H1N1)) seg... 36.2 0.77
gb|GU576508.1| Influenza A virus (A/Ancona/56/2009(H1N1)) seg... 36.2 0.77
gb|GU576504.1| Influenza A virus (A/Ancona/16/2009(H1N1)) seg... 36.2 0.77
gb|GU576502.1| Influenza A virus (A/Ancona/15/2009(H1N1)) seg... 36.2 0.77
gb|GU576500.1| Influenza A virus (A/Ancona/10/2009(H1N1)) seg... 36.2 0.77
gb|CY054979.1| Influenza A virus (A/California/VRDL55/2009(H1... 36.2 0.77
gb|CY054939.1| Influenza A virus (A/California/VRDL48/2009(H1... 36.2 0.77
gb|CY054931.1| Influenza A virus (A/California/VRDL45/2009(H1... 36.2 0.77
gb|CY054899.1| Influenza A virus (A/California/VRDL39/2009(H1... 36.2 0.77
gb|CY054891.1| Influenza A virus (A/California/VRDL38/2009(H1... 36.2 0.77
gb|CY054859.1| Influenza A virus (A/California/VRDL33/2009(H1... 36.2 0.77
gb|CY054851.1| Influenza A virus (A/California/VRDL32/2009(H1... 36.2 0.77
gb|CY054715.1| Influenza A virus (A/California/VRDL5/2009(H1N... 36.2 0.77
gb|GU560025.1| Influenza A virus (A/Astana/830/2009(H1N1)) se... 36.2 0.77
gb|CY054578.1| Influenza A virus (A/Catalonia/S2143/2009(H1N1... 36.2 0.77
gb|CY054558.1| Influenza A virus (A/Catalonia/S2099/2009(H1N1... 36.2 0.77
gb|GU369672.1| Influenza A virus (A/Ankara/28/2009(H1N1)) seg... 36.2 0.77
gb|GU369662.1| Influenza A virus (A/Ankara/18/2009(H1N1)) seg... 36.2 0.77
gb|GU369660.1| Influenza A virus (A/Ankara/16/2009(H1N1)) seg... 36.2 0.77
gb|GU369659.1| Influenza A virus (A/Ankara/15/2009(H1N1)) seg... 36.2 0.77
gb|GU369656.1| Influenza A virus (A/Ankara/12/2009(H1N1)) seg... 36.2 0.77
gb|GU369652.1| Influenza A virus (A/Ankara/08/2009(H1N1)) seg... 36.2 0.77
gb|CY053401.1| Influenza A virus (A/Catalonia/S2010/2009(H1N1... 36.2 0.77
gb|CY053391.1| Influenza A virus (A/Catalonia/S1947/2009(H1N1... 36.2 0.77
gb|CY053385.1| Influenza A virus (A/Catalonia/S1944/2009(H1N1... 36.2 0.77
gb|CY052951.1| Influenza A virus (A/Texas/45061755/2009(H1N1)... 36.2 0.77
gb|CY052631.1| Influenza A virus (A/Texas/45061670/2009(H1N1)... 36.2 0.77
gb|CY052607.1| Influenza A virus (A/Texas/45034157/2009(H1N1)... 36.2 0.77
dbj|AB535744.1| Influenza A virus (A/Nagasaki/HA-52/2009(H1N1... 36.2 0.77
gb|CY052042.1| Influenza A virus (A/Catalonia/S1835/2009(H1N1... 36.2 0.77
gb|CY052040.1| Influenza A virus (A/Catalonia/S1834/2009(H1N1... 36.2 0.77
gb|CY052036.1| Influenza A virus (A/Catalonia/S1830/2009(H1N1... 36.2 0.77
gb|CY052034.1| Influenza A virus (A/Catalonia/S1829/2009(H1N1... 36.2 0.77
gb|CY052032.1| Influenza A virus (A/Catalonia/S1828/2009(H1N1... 36.2 0.77
gb|CY052019.1| Influenza A virus (A/Norway/3206-3/2009(H1N1))... 36.2 0.77
gb|CY052015.1| Influenza A virus (A/Norway/4023/2009(H1N1)) s... 36.2 0.77
gb|CY052007.1| Influenza A virus (A/Norway/3478/2009(H1N1)) s... 36.2 0.77
gb|CY051991.1| Influenza A virus (A/Norway/3059/2009(H1N1)) s... 36.2 0.77
gb|CY051987.1| Influenza A virus (A/Norway/2690/2009(H1N1)) s... 36.2 0.77
gb|CY051986.1| Influenza A virus (A/Norway/2674/2009(H1N1)) s... 36.2 0.77
gb|CY051982.1| Influenza A virus (A/Catalonia/S1761/2009(H1N1... 36.2 0.77
gb|CY051976.1| Influenza A virus (A/Catalonia/S1758/2009(H1N1... 36.2 0.77
gb|CY051964.1| Influenza A virus (A/Catalonia/S1748/2009(H1N1... 36.2 0.77
gb|CY051955.1| Influenza A virus (A/Catalonia/S1698/2009(H1N1... 36.2 0.77
gb|CY051940.1| Influenza A virus (A/Catalonia/S1674/2009(H1N1... 36.2 0.77
gb|CY051937.1| Influenza A virus (A/Catalonia/S1672/2009(H1N1... 36.2 0.77
gb|GU214058.1| Influenza A virus (A/Serbia/3547/2009(H1N1)) s... 36.2 0.77
gb|CY050319.1| Influenza A virus (A/Catalonia/S1641/2009(H1N1... 36.2 0.77
gb|CY050316.1| Influenza A virus (A/Catalonia/S1637/2009(H1N1... 36.2 0.77
gb|CY050313.1| Influenza A virus (A/Catalonia/S1632/2009(H1N1... 36.2 0.77
gb|CY050307.1| Influenza A virus (A/Catalonia/S1606/2009(H1N1... 36.2 0.77
gb|CY050304.1| Influenza A virus (A/Catalonia/S1605/2009(H1N1... 36.2 0.77
gb|CY050301.1| Influenza A virus (A/Catalonia/S1604/2009(H1N1... 36.2 0.77
dbj|AB530488.1| Influenza A virus (A/Nagasaki/HA-44/2009(H1N1... 36.2 0.77
gb|CY049742.1| Influenza A virus (A/Catalonia/S1592/2009(H1N1... 36.2 0.77
gb|CY049736.1| Influenza A virus (A/Catalonia/S1587/2009(H1N1... 36.2 0.77
gb|CY049728.1| Influenza A virus (A/Catalonia/S1545/2009(H1N1... 36.2 0.77
gb|CY049707.1| Influenza A virus (A/Catalonia/S1479/2009(H1N1... 36.2 0.77
gb|CY049704.1| Influenza A virus (A/Catalonia/S1478/2009(H1N1... 36.2 0.77
gb|CY049051.1| Influenza A virus (A/Catalonia/S1436/2009(H1N1... 36.2 0.77
gb|CY049027.1| Influenza A virus (A/Catalonia/S1379/2009(H1N1... 36.2 0.77
gb|CY049024.1| Influenza A virus (A/Catalonia/S1369/2009(H1N1... 36.2 0.77
gb|CY049018.1| Influenza A virus (A/Catalonia/S1350/2009(H1N1... 36.2 0.77
gb|CY049015.1| Influenza A virus (A/Catalonia/S1333/2009(H1N1... 36.2 0.77
gb|CY049012.1| Influenza A virus (A/Catalonia/S1331/2009(H1N1... 36.2 0.77
gb|CY049003.1| Influenza A virus (A/Catalonia/S1304/2009(H1N1... 36.2 0.77
gb|CY049000.1| Influenza A virus (A/Catalonia/S1300/2009(H1N1... 36.2 0.77
gb|CY047307.1| Influenza A virus (A/Catalonia/S1286/2009(H1N1... 36.2 0.77
gb|CY047290.1| Influenza A virus (A/Catalonia/S1273/2009(H1N1... 36.2 0.77
gb|CY047287.1| Influenza A virus (A/Catalonia/S1272/2009(H1N1... 36.2 0.77
gb|CY047278.1| Influenza A virus (A/Catalonia/S1269/2009(H1N1... 36.2 0.77
gb|CY047269.1| Influenza A virus (A/Catalonia/S1265/2009(H1N1... 36.2 0.77
gb|CY047266.1| Influenza A virus (A/Catalonia/S1260/2009(H1N1... 36.2 0.77
gb|CY047263.1| Influenza A virus (A/Catalonia/S1254/2009(H1N1... 36.2 0.77
gb|CY047257.1| Influenza A virus (A/Catalonia/S1249/2009(H1N1... 36.2 0.77
gb|CY047254.1| Influenza A virus (A/Catalonia/S1248/2009(H1N1... 36.2 0.77
gb|CY047243.1| Influenza A virus (A/Catalonia/S1237/2009(H1N1... 36.2 0.77
gb|CY047240.1| Influenza A virus (A/Catalonia/S1236/2009(H1N1... 36.2 0.77
gb|CY047230.1| Influenza A virus (A/Catalonia/S1227/2009(H1N1... 36.2 0.77
gb|CY047227.1| Influenza A virus (A/Catalonia/S1222/2009(H1N1... 36.2 0.77
gb|CY047221.1| Influenza A virus (A/Catalonia/S1215/2009(H1N1... 36.2 0.77
gb|CY047215.1| Influenza A virus (A/Catalonia/S1209/2009(H1N1... 36.2 0.77
gb|CY047203.1| Influenza A virus (A/Catalonia/S1205/2009(H1N1... 36.2 0.77
gb|CY047200.1| Influenza A virus (A/Catalonia/S1199/2009(H1N1... 36.2 0.77
gb|CY047188.1| Influenza A virus (A/Catalonia/S1187/2009(H1N1... 36.2 0.77
gb|CY047185.1| Influenza A virus (A/Catalonia/S1183/2009(H1N1... 36.2 0.77
gb|CY047182.1| Influenza A virus (A/Catalonia/S1182/2009(H1N1... 36.2 0.77
gb|CY047164.1| Influenza A virus (A/Catalonia/S1165/2009(H1N1... 36.2 0.77
gb|CY047158.1| Influenza A virus (A/Catalonia/S1161/2009(H1N1... 36.2 0.77
gb|CY047137.1| Influenza A virus (A/Catalonia/S1120/2009(H1N1... 36.2 0.77
gb|CY047083.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 36.2 0.77
gb|CY047080.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 36.2 0.77
gb|GQ485661.1| Influenza A virus (A/Almati/01/2009(H1N1)) seg... 36.2 0.77
gb|GQ457519.1| Influenza A virus (A/Changsha/78/2009(H1N1)) s... 36.2 0.77
gb|GQ457514.1| Influenza A virus (A/California/25/2009(H1N1))... 36.2 0.77
gb|GQ422381.1| Influenza A virus (A/Milan/83/2009(H1N1)) segm... 36.2 0.77
gb|GQ422380.1| Influenza A virus (A/Milan/80/2009(H1N1)) segm... 36.2 0.77
gb|GQ421203.1| Influenza A virus (A/Ancona/05/2009(H1N1)) seg... 36.2 0.77
gb|GQ387430.1| Influenza A virus (A/Catalonia/378/2009(H1N1))... 36.2 0.77
gb|GQ387382.1| Influenza A virus (A/Italy/172/2009(H1N1)) hem... 36.2 0.77
gb|GQ365446.1| Influenza A virus (A/Sapporo/1/2009(H1N1)) seg... 36.2 0.77
gb|GQ355305.1| Influenza A virus (A/Catalonia/387/2009(H1N1))... 36.2 0.77
gb|GQ351314.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 36.2 0.77
gb|GQ258700.1| Influenza A virus (A/Athens/893/2009(H1N1)) se... 36.2 0.77
gb|GQ249333.1| Influenza A virus (A/Paris/2591/2009(H1N1)) se... 36.2 0.77
gb|GQ160534.1| Influenza A virus (A/New Jersey/01/2009(H1N1))... 36.2 0.77

niman · **Posted:** Tue Feb 02, 2010 4:18 pm

Commentary

http://www.recombinomics.com/News/02021 ... ecomb.html

GAGuidestone79 · **Joined:** Tue Nov 24, 2009 9:37 am **Posts:** 250

A quite fascinating read and perhaps one of your most detailed commentaries Dr. Niman.

Much appreciated !

niman · **Posted:** Wed Feb 03, 2010 9:44 am

Updated travel log for C940T

gb|GU585441.1| Influenza A virus (A/Roma/ISS1941/2009(H1N1)) ... 36.2 0.77
gb|GU585440.1| Influenza A virus (A/Roma/ISS1897/2009(H1N1)) ... 36.2 0.77
gb|GU585439.1| Influenza A virus (A/Roma/ISS3625/2009(H1N1)) ... 36.2 0.77
gb|GU585406.1| Influenza A virus (A/Roma/ISS10/2009(H1N1)) se... 36.2 0.77
gb|GU459103.1| Influenza A virus (A/Pavia/65/2009(H1N1)) segm... 36.2 0.77
gb|GU459102.1| Influenza A virus (A/Pavia/74/2009(H1N1)) segm... 36.2 0.77
gb|GU459099.1| Influenza A virus (A/Pavia/70/2009(H1N1)) segm... 36.2 0.77
gb|GU459095.1| Influenza A virus (A/Pavia/67/2009(H1N1)) segm... 36.2 0.77
gb|GU459093.1| Influenza A virus (A/Pavia/71/2009(H1N1)) segm... 36.2 0.77
gb|GU451274.1| Influenza A virus (A/Milan/348/2009(H1N1)) seg... 36.2 0.77
gb|GU451270.1| Influenza A virus (A/Milan/314/2009(H1N1)) seg... 36.2 0.77
gb|GU451269.1| Influenza A virus (A/Milan/298/2009(H1N1)) seg... 36.2 0.77
gb|GU451267.1| Influenza A virus (A/Milan/295/2009(H1N1)) seg... 36.2 0.77
gb|GU451265.1| Influenza A virus (A/Milan/265/2009(H1N1)) seg... 36.2 0.77
gb|GU451263.1| Influenza A virus (A/Milan/236/2009(H1N1)) seg... 36.2 0.77
gb|GU576524.1| Influenza A virus (A/Ancona/97/2009(H1N1)) seg... 36.2 0.77
gb|GU576522.1| Influenza A virus (A/Ancona/86/2009(H1N1)) seg... 36.2 0.77
gb|GU576521.1| Influenza A virus (A/Ancona/80/2009(H1N1)) seg... 36.2 0.77
gb|GU576519.1| Influenza A virus (A/Ancona/75/2009(H1N1)) seg... 36.2 0.77
gb|GU576517.1| Influenza A virus (A/Ancona/69/2009(H1N1)) seg... 36.2 0.77
gb|GU576515.1| Influenza A virus (A/Ancona/68/2009(H1N1)) seg... 36.2 0.77
gb|GU576512.1| Influenza A virus (A/Ancona/61/2009(H1N1)) seg... 36.2 0.77
gb|GU576510.1| Influenza A virus (A/Ancona/60/2009(H1N1)) seg... 36.2 0.77
gb|GU576508.1| Influenza A virus (A/Ancona/56/2009(H1N1)) seg... 36.2 0.77
gb|GU576502.1| Influenza A virus (A/Ancona/15/2009(H1N1)) seg... 36.2 0.77
gb|GU576500.1| Influenza A virus (A/Ancona/10/2009(H1N1)) seg... 36.2 0.77
gb|CY054979.1| Influenza A virus (A/California/VRDL55/2009(H1... 36.2 0.77
gb|CY054939.1| Influenza A virus (A/California/VRDL48/2009(H1... 36.2 0.77
gb|CY054931.1| Influenza A virus (A/California/VRDL45/2009(H1... 36.2 0.77
gb|CY054899.1| Influenza A virus (A/California/VRDL39/2009(H1... 36.2 0.77
gb|CY054891.1| Influenza A virus (A/California/VRDL38/2009(H1... 36.2 0.77
gb|CY054851.1| Influenza A virus (A/California/VRDL32/2009(H1... 36.2 0.77
gb|CY054715.1| Influenza A virus (A/California/VRDL5/2009(H1N... 36.2 0.77
gb|GU369672.1| Influenza A virus (A/Ankara/28/2009(H1N1)) seg... 36.2 0.77
gb|CY052951.1| Influenza A virus (A/Texas/45061755/2009(H1N1)... 36.2 0.77
gb|CY052631.1| Influenza A virus (A/Texas/45061670/2009(H1N1)... 36.2 0.77
gb|CY052607.1| Influenza A virus (A/Texas/45034157/2009(H1N1)... 36.2 0.77
dbj|AB535745.1| Influenza A virus (A/Nagasaki/HA-53/2009(H1N1... 36.2 0.77
dbj|AB535744.1| Influenza A virus (A/Nagasaki/HA-52/2009(H1N1... 36.2 0.77
dbj|AB530488.1| Influenza A virus (A/Nagasaki/HA-44/2009(H1N1... 36.2 0.77
gb|GQ457514.1| Influenza A virus (A/California/25/2009(H1N1))... 36.2 0.77
gb|GQ422381.1| Influenza A virus (A/Milan/83/2009(H1N1)) segm... 36.2 0.77
gb|GQ387430.1| Influenza A virus (A/Catalonia/378/2009(H1N1))... 36.2 0.77
gb|GQ387382.1| Influenza A virus (A/Italy/172/2009(H1N1)) hem... 36.2 0.77
gb|GQ351314.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 36.2 0.77

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