Rhiza Labs FluTracker Forum

T933C

gb|CY055075.1| Influenza A virus (A/Australia/6/2009(H1N1)) s... 38.2 0.19
gb|GU326329.1| Influenza A virus (A/Shandong/SWL4116/2009(H1N... 38.2 0.19
gb|CY052282.1| Influenza A virus (A/Texas/43292238/2009(H1N1)... 38.2 0.19
dbj|AB536768.1| Influenza A virus (A/Nagasaki/HA-57/2009(H1N1... 38.2 0.19
dbj|AB535748.1| Influenza A virus (A/Nagasaki/HA-63/2009(H1N1... 38.2 0.19
gb|CY051823.1| Influenza A virus (A/Texas/43242018/2009(H1N1)... 38.2 0.19
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 38.2 0.19
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 38.2 0.19
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 38.2 0.19
gb|CY047712.1| Influenza A virus (A/Hangzhou/1/2009(H1N1)) se... 38.2 0.19
dbj|AB434336.1| Influenza A virus (A/swine/Saraburi/NIAH13021... 38.2 0.19
gb|EU296607.1| Influenza A virus (A/swine/Saraburi/NIAH13021/... 38.2 0.19
gb|AY060052.1| Influenza A virus (A/SW/MN/17138/01(H1N2)) hem... 38.2 0.19

Commentary

http://www.recombinomics.com/News/01311 ... China.html

The commentary gives more detail on the linkage and recombination. Having the same set of polymorphisms aggregated onto one sequence in Australia demonatrates how these gene pieces (polymorphisms) jump from one genetic sequence to the next and one continent to the next. Australia has markers from Australia, Asia, and North America which are key markers in sub-clades which have D225G, D225N, or both.

What is the information on whether they were fatal cases or not in these sequences?

There were at least 3 fatalities in the North Carolina cluster, so it is likely that the three sequences with D225G or D225N came from those patients. The first isolates from Zhejiang was from a severe case. She was hospitalized over a month and likely recovered, but was characterized as the first severe H1N1 case in Zhejiang Province. The status of the Australian patients is unclear. Virtually all Ukraine or Russian sequences with D225G/N were from fatal cases.

New sequences from Austrailia (at Genbank), provide compelling evidence for recombination in Austrailia. The travel logs above will be updated with the newly released sequences.

gb|CY056164.1| Influenza A virus (A/Pensacola/INS40/2009(H1N1... 32.2 12
gb|CY055940.1| Influenza A virus (A/Australia/82/2009(H1N1)) ... 32.2 12
gb|CY055932.1| Influenza A virus (A/Australia/81/2009(H1N1)) ... 32.2 12
gb|CY055924.1| Influenza A virus (A/Australia/80/2009(H1N1)) ... 32.2 12
gb|CY055908.1| Influenza A virus (A/Australia/73/2009(H1N1)) ... 32.2 12
gb|CY055900.1| Influenza A virus (A/Australia/72/2009(H1N1)) ... 32.2 12
gb|CY055892.1| Influenza A virus (A/Australia/70/2009(H1N1)) ... 32.2 12
gb|CY055884.1| Influenza A virus (A/Australia/69/2009(H1N1)) ... 32.2 12
gb|CY055876.1| Influenza A virus (A/Australia/66/2009(H1N1)) ... 32.2 12
gb|CY055868.1| Influenza A virus (A/Australia/65/2009(H1N1)) ... 32.2 12
gb|CY055860.1| Influenza A virus (A/Australia/64/2009(H1N1)) ... 32.2 12
gb|CY055836.1| Influenza A virus (A/Australia/60/2009(H1N1)) ... 32.2 12
gb|CY055828.1| Influenza A virus (A/Australia/59/2009(H1N1)) ... 32.2 12
gb|CY055812.1| Influenza A virus (A/Australia/57/2009(H1N1)) ... 32.2 12
gb|CY055796.1| Influenza A virus (A/Australia/54/2009(H1N1)) ... 32.2 12
gb|CY055788.1| Influenza A virus (A/Australia/53/2009(H1N1)) ... 32.2 12
gb|CY055780.1| Influenza A virus (A/Australia/51/2009(H1N1)) ... 32.2 12
gb|CY055756.1| Influenza A virus (A/Australia/45/2009(H1N1)) ... 32.2 12
gb|CY055740.1| Influenza A virus (A/Australia/43/2009(H1N1)) ... 32.2 12
gb|CY055732.1| Influenza A virus (A/Australia/42/2009(H1N1)) ... 32.2 12
gb|CY055724.1| Influenza A virus (A/Australia/40/2009(H1N1)) ... 32.2 12
gb|CY055716.1| Influenza A virus (A/Australia/39/2009(H1N1)) ... 32.2 12
gb|CY055708.1| Influenza A virus (A/Australia/37/2009(H1N1)) ... 32.2 12
gb|CY055700.1| Influenza A virus (A/Australia/36/2009(H1N1)) ... 32.2 12
gb|CY055692.1| Influenza A virus (A/Australia/35/2009(H1N1)) ... 32.2 12
gb|CY055676.1| Influenza A virus (A/Australia/31/2009(H1N1)) ... 32.2 12
gb|CY055668.1| Influenza A virus (A/Australia/29/2009(H1N1)) ... 32.2 12
gb|CY055653.1| Influenza A virus (A/Australia/27/2009(H1N1)) ... 32.2 12
gb|CY055637.1| Influenza A virus (A/Australia/25/2009(H1N1)) ... 32.2 12
gb|CY055621.1| Influenza A virus (A/Australia/23/2009(H1N1)) ... 32.2 12
gb|CY055613.1| Influenza A virus (A/Australia/21/2009(H1N1)) ... 32.2 12
gb|CY055605.1| Influenza A virus (A/Australia/20/2009(H1N1)) ... 32.2 12
gb|CY055581.1| Influenza A virus (A/Australia/14/2009(H1N1)) ... 32.2 12
gb|CY055550.1| Influenza A virus (A/Australia/10/2009(H1N1)) ... 32.2 12
gb|CY055542.1| Influenza A virus (A/Australia/9/2009(H1N1)) s... 32.2 12
gb|CY055534.1| Influenza A virus (A/Australia/7/2009(H1N1)) s... 32.2 12
gb|CY055526.1| Influenza A virus (A/Australia/1/2009(H1N1)) s... 32.2 12
gb|GU459110.1| Influenza A virus (A/Pavia/8/2009(H1N1)) segme... 32.2 12
gb|CY055075.1| Influenza A virus (A/Australia/6/2009(H1N1)) s... 32.2 12
gb|CY055067.1| Influenza A virus (A/Australia/4/2009(H1N1)) s... 32.2 12
gb|GU332630.1| Influenza A virus (A/cat/IA/26991/2009(H1N1)) ... 32.2 12
gb|CY052005.1| Influenza A virus (A/Norway/3433/2009(H1N1)) s... 32.2 12
gb|CY049691.1| Influenza A virus (A/Singapore/GP2711/2009(H1N... 32.2 12
gb|CY047150.1| Influenza A virus (A/Catalonia/S1138/2009(H1N1... 32.2 12
gb|GU014748.1| Influenza A virus (A/Gifu-C/67/2009(H1N1)) seg... 32.2 12
gb|GQ377064.1| Influenza A virus (A/Virginia/05/2009(H1N1)) s... 32.2 12
gb|GQ232009.1| Influenza A virus (A/Kentucky/05/2009(H1N1)) s... 32.2 12

gb|CY055940.1| Influenza A virus (A/Australia/82/2009(H1N1)) ... 32.2 12
gb|CY055932.1| Influenza A virus (A/Australia/81/2009(H1N1)) ... 32.2 12
gb|CY055924.1| Influenza A virus (A/Australia/80/2009(H1N1)) ... 32.2 12
gb|CY055908.1| Influenza A virus (A/Australia/73/2009(H1N1)) ... 32.2 12
gb|CY055900.1| Influenza A virus (A/Australia/72/2009(H1N1)) ... 32.2 12
gb|CY055892.1| Influenza A virus (A/Australia/70/2009(H1N1)) ... 32.2 12
gb|CY055884.1| Influenza A virus (A/Australia/69/2009(H1N1)) ... 32.2 12
gb|CY055876.1| Influenza A virus (A/Australia/66/2009(H1N1)) ... 32.2 12
gb|CY055868.1| Influenza A virus (A/Australia/65/2009(H1N1)) ... 32.2 12
gb|CY055860.1| Influenza A virus (A/Australia/64/2009(H1N1)) ... 32.2 12
gb|CY055836.1| Influenza A virus (A/Australia/60/2009(H1N1)) ... 32.2 12
gb|CY055828.1| Influenza A virus (A/Australia/59/2009(H1N1)) ... 32.2 12
gb|CY055812.1| Influenza A virus (A/Australia/57/2009(H1N1)) ... 32.2 12
gb|CY055796.1| Influenza A virus (A/Australia/54/2009(H1N1)) ... 32.2 12
gb|CY055788.1| Influenza A virus (A/Australia/53/2009(H1N1)) ... 32.2 12
gb|CY055780.1| Influenza A virus (A/Australia/51/2009(H1N1)) ... 32.2 12
gb|CY055756.1| Influenza A virus (A/Australia/45/2009(H1N1)) ... 32.2 12
gb|CY055740.1| Influenza A virus (A/Australia/43/2009(H1N1)) ... 32.2 12
gb|CY055732.1| Influenza A virus (A/Australia/42/2009(H1N1)) ... 32.2 12
gb|CY055724.1| Influenza A virus (A/Australia/40/2009(H1N1)) ... 32.2 12
gb|CY055716.1| Influenza A virus (A/Australia/39/2009(H1N1)) ... 32.2 12
gb|CY055708.1| Influenza A virus (A/Australia/37/2009(H1N1)) ... 32.2 12
gb|CY055700.1| Influenza A virus (A/Australia/36/2009(H1N1)) ... 32.2 12
gb|CY055692.1| Influenza A virus (A/Australia/35/2009(H1N1)) ... 32.2 12
gb|CY055676.1| Influenza A virus (A/Australia/31/2009(H1N1)) ... 32.2 12
gb|CY055668.1| Influenza A virus (A/Australia/29/2009(H1N1)) ... 32.2 12
gb|CY055653.1| Influenza A virus (A/Australia/27/2009(H1N1)) ... 32.2 12
gb|CY055637.1| Influenza A virus (A/Australia/25/2009(H1N1)) ... 32.2 12
gb|CY055621.1| Influenza A virus (A/Australia/23/2009(H1N1)) ... 32.2 12
gb|CY055613.1| Influenza A virus (A/Australia/21/2009(H1N1)) ... 32.2 12
gb|CY055605.1| Influenza A virus (A/Australia/20/2009(H1N1)) ... 32.2 12
gb|CY055581.1| Influenza A virus (A/Australia/14/2009(H1N1)) ... 32.2 12
gb|CY055550.1| Influenza A virus (A/Australia/10/2009(H1N1)) ... 32.2 12
gb|CY055542.1| Influenza A virus (A/Australia/9/2009(H1N1)) s... 32.2 12
gb|CY055534.1| Influenza A virus (A/Australia/7/2009(H1N1)) s... 32.2 12
gb|CY055526.1| Influenza A virus (A/Australia/1/2009(H1N1)) s... 32.2 12
gb|GU459110.1| Influenza A virus (A/Pavia/8/2009(H1N1)) segme... 32.2 12
gb|CY055075.1| Influenza A virus (A/Australia/6/2009(H1N1)) s... 32.2 12
gb|CY055067.1| Influenza A virus (A/Australia/4/2009(H1N1)) s... 32.2 12
gb|GU371256.1| Influenza A virus (A/Orenburg/IIV2974/2009(H1N... 32.2 12
gb|GU332630.1| Influenza A virus (A/cat/IA/26991/2009(H1N1)) ... 32.2 12
gb|CY052005.1| Influenza A virus (A/Norway/3433/2009(H1N1)) s... 32.2 12
gb|CY049691.1| Influenza A virus (A/Singapore/GP2711/2009(H1N... 32.2 12
gb|GU014748.1| Influenza A virus (A/Gifu-C/67/2009(H1N1)) seg... 32.2 12

A/SYDNEY/2501/2009
gb|CY055924.1| Influenza A virus (A/Australia/80/2009(H1N1)) ... 38.2 0.20
gb|CY055876.1| Influenza A virus (A/Australia/66/2009(H1N1)) ... 38.2 0.20
gb|CY055788.1| Influenza A virus (A/Australia/53/2009(H1N1)) ... 38.2 0.20
gb|CY055732.1| Influenza A virus (A/Australia/42/2009(H1N1)) ... 38.2 0.20
gb|CY055716.1| Influenza A virus (A/Australia/39/2009(H1N1)) ... 38.2 0.20
gb|CY055637.1| Influenza A virus (A/Australia/25/2009(H1N1)) ... 38.2 0.20
gb|FJ752522.1| Influenza A virus (A/swine/Pingtung/64-26/2007... 38.2 0.20
gb|GU459110.1| Influenza A virus (A/Pavia/8/2009(H1N1)) segme... 38.2 0.20
gb|CY055075.1| Influenza A virus (A/Australia/6/2009(H1N1)) s... 38.2 0.20
gb|GU326329.1| Influenza A virus (A/Shandong/SWL4116/2009(H1N... 38.2 0.20
gb|CY052282.1| Influenza A virus (A/Texas/43292238/2009(H1N1)... 38.2 0.20
dbj|AB536768.1| Influenza A virus (A/Nagasaki/HA-57/2009(H1N1... 38.2 0.20
dbj|AB535748.1| Influenza A virus (A/Nagasaki/HA-63/2009(H1N1... 38.2 0.20
gb|CY051823.1| Influenza A virus (A/Texas/43242018/2009(H1N1)... 38.2 0.20
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 38.2 0.20
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 38.2 0.20
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 38.2 0.20
gb|CY047712.1| Influenza A virus (A/Hangzhou/1/2009(H1N1)) se... 38.2 0.20
dbj|AB434336.1| Influenza A virus (A/swine/Saraburi/NIAH13021... 38.2 0.20
gb|EU296607.1| Influenza A virus (A/swine/Saraburi/NIAH13021/... 38.2 0.20
gb|AY060052.1| Influenza A virus (A/SW/MN/17138/01(H1N2)) hem... 38.2 0.20

Dr Niman,

Is there a simple way to explain these travel logs? I don't know what they mean.

The last mean H3N2 viruses had Perth and Brisbane names - will Sydney/A be the killer this time around? Pity, I live there.....