Rhiza Labs FluTracker Forum

Below is the travel log for C940T. Most of the Ancona sequences with D225E also have C940T. However. most of the sequences from Pavia and Milan cover position C940T, yet only 11 of the published sequences have C940T (and all sequences with C940T have D225E)

A/Pavia/74/2009
A/Pavia/70/2009
A/Pavia/65/2009
A/Milan/348/2009
A/Milan/298/2009
A/Milan/265/2009
A/Milan/236/2009
A/Milan/314/2009
A/Pavia/67/2009
A/Pavia/71/2009
A/Milan/295/2009
gb|GU576524.1| Influenza A virus (A/Ancona/97/2009(H1N1)) seg... 34.2 3.1
gb|GU576522.1| Influenza A virus (A/Ancona/86/2009(H1N1)) seg... 34.2 3.1
gb|GU576521.1| Influenza A virus (A/Ancona/80/2009(H1N1)) seg... 34.2 3.1
gb|GU576519.1| Influenza A virus (A/Ancona/75/2009(H1N1)) seg... 34.2 3.1
gb|GU576517.1| Influenza A virus (A/Ancona/69/2009(H1N1)) seg... 34.2 3.1
gb|GU576515.1| Influenza A virus (A/Ancona/68/2009(H1N1)) seg... 34.2 3.1
gb|GU576512.1| Influenza A virus (A/Ancona/61/2009(H1N1)) seg... 34.2 3.1
gb|GU576510.1| Influenza A virus (A/Ancona/60/2009(H1N1)) seg... 34.2 3.1
gb|GU576508.1| Influenza A virus (A/Ancona/56/2009(H1N1)) seg... 34.2 3.1
gb|GU576502.1| Influenza A virus (A/Ancona/15/2009(H1N1)) seg... 34.2 3.1
gb|GU576500.1| Influenza A virus (A/Ancona/10/2009(H1N1)) seg... 34.2 3.1
gb|CY054979.1| Influenza A virus (A/California/VRDL55/2009(H1... 34.2 3.1
gb|CY054939.1| Influenza A virus (A/California/VRDL48/2009(H1... 34.2 3.1
gb|CY054931.1| Influenza A virus (A/California/VRDL45/2009(H1... 34.2 3.1
gb|CY054899.1| Influenza A virus (A/California/VRDL39/2009(H1... 34.2 3.1
gb|CY054891.1| Influenza A virus (A/California/VRDL38/2009(H1... 34.2 3.1
gb|CY054851.1| Influenza A virus (A/California/VRDL32/2009(H1... 34.2 3.1
gb|CY054715.1| Influenza A virus (A/California/VRDL5/2009(H1N... 34.2 3.1
gb|GU369672.1| Influenza A virus (A/Ankara/28/2009(H1N1)) seg... 34.2 3.1
gb|CY052951.1| Influenza A virus (A/Texas/45061755/2009(H1N1)... 34.2 3.1
gb|CY052631.1| Influenza A virus (A/Texas/45061670/2009(H1N1)... 34.2 3.1
gb|CY052607.1| Influenza A virus (A/Texas/45034157/2009(H1N1)... 34.2 3.1
dbj|AB535745.1| Influenza A virus (A/Nagasaki/HA-53/2009(H1N1... 34.2 3.1
dbj|AB535744.1| Influenza A virus (A/Nagasaki/HA-52/2009(H1N1... 34.2 3.1
dbj|AB530488.1| Influenza A virus (A/Nagasaki/HA-44/2009(H1N1... 34.2 3.1
gb|GQ457514.1| Influenza A virus (A/California/25/2009(H1N1))... 34.2 3.1
gb|GQ422381.1| Influenza A virus (A/Milan/83/2009(H1N1)) segm... 34.2 3.1
gb|GQ387430.1| Influenza A virus (A/Catalonia/378/2009(H1N1))... 34.2 3.1
gb|GQ387382.1| Influenza A virus (A/Italy/172/2009(H1N1)) hem... 34.2 3.1
gb|GQ351314.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 34.2 3.1

Commentary

http://www.recombinomics.com/News/02011 ... Italy.html

The Pavia and Milan sequences are at Genbank, as are Rome sequences which were not at GISAID earlier.

Rome sequences are more heterogeneous. Out of 41 sequences, 8 had D225E, 2 had D225G, and 1 had E227V.

Updated NA marker found in D225E isoaltes

gb|GU576543.1| Influenza A virus (A/Ancona/01/2010(H1N1)) seg... 34.2 3.1
gb|GU576525.1| Influenza A virus (A/Ancona/97/2009(H1N1)) seg... 34.2 3.1
gb|GU576523.1| Influenza A virus (A/Ancona/86/2009(H1N1)) seg... 34.2 3.1
gb|GU576520.1| Influenza A virus (A/Ancona/75/2009(H1N1)) seg... 34.2 3.1
gb|GU576518.1| Influenza A virus (A/Ancona/69/2009(H1N1)) seg... 34.2 3.1
gb|GU576516.1| Influenza A virus (A/Ancona/68/2009(H1N1)) seg... 34.2 3.1
gb|GU576513.1| Influenza A virus (A/Ancona/61/2009(H1N1)) seg... 34.2 3.1
gb|GU576511.1| Influenza A virus (A/Ancona/60/2009(H1N1)) seg... 34.2 3.1
gb|GU576509.1| Influenza A virus (A/Ancona/56/2009(H1N1)) seg... 34.2 3.1
gb|GU576505.1| Influenza A virus (A/Ancona/16/2009(H1N1)) seg... 34.2 3.1
gb|GU576503.1| Influenza A virus (A/Ancona/15/2009(H1N1)) seg... 34.2 3.1
gb|CY054981.1| Influenza A virus (A/California/VRDL55/2009(H1... 34.2 3.1
gb|CY054941.1| Influenza A virus (A/California/VRDL48/2009(H1... 34.2 3.1
gb|CY054933.1| Influenza A virus (A/California/VRDL45/2009(H1... 34.2 3.1
gb|CY054901.1| Influenza A virus (A/California/VRDL39/2009(H1... 34.2 3.1
gb|CY054893.1| Influenza A virus (A/California/VRDL38/2009(H1... 34.2 3.1
gb|CY054861.1| Influenza A virus (A/California/VRDL33/2009(H1... 34.2 3.1
gb|CY054853.1| Influenza A virus (A/California/VRDL32/2009(H1... 34.2 3.1
gb|CY054717.1| Influenza A virus (A/California/VRDL5/2009(H1N... 34.2 3.1
gb|CY054579.1| Influenza A virus (A/Catalonia/S2143/2009(H1N1... 34.2 3.1
gb|CY054559.1| Influenza A virus (A/Catalonia/S2099/2009(H1N1... 34.2 3.1
gb|GU367326.1| Influenza A virus (A/Novgorod/01/2009(H1N1)) s... 34.2 3.1
gb|GU361110.1| Influenza A virus (A/Stockholm/091120-2/2009(H... 34.2 3.1
gb|GU332632.1| Influenza A virus (A/cat/IA/26991/2009(H1N1)) ... 34.2 3.1
gb|CY052092.1| Influenza A virus (A/Italy/233/2009(H1N1)) seg... 34.2 3.1
gb|CY053402.1| Influenza A virus (A/Catalonia/S2010/2009(H1N1... 34.2 3.1
gb|CY053392.1| Influenza A virus (A/Catalonia/S1947/2009(H1N1... 34.2 3.1
gb|CY053386.1| Influenza A virus (A/Catalonia/S1944/2009(H1N1... 34.2 3.1
gb|CY052953.1| Influenza A virus (A/Texas/45061755/2009(H1N1)... 34.2 3.1
gb|CY052633.1| Influenza A virus (A/Texas/45061670/2009(H1N1)... 34.2 3.1
gb|CY052609.1| Influenza A virus (A/Texas/45034157/2009(H1N1)... 34.2 3.1
gb|CY052362.1| Influenza A virus (A/UAE/G01/2009(H1N1)) segme... 34.2 3.1
gb|CY052069.1| Influenza A virus (A/Belarus/42/2009(H1N1)) se... 34.2 3.1
gb|CY052067.1| Influenza A virus (A/Belarus/4/2009(H1N1)) seg... 34.2 3.1
gb|CY052061.1| Influenza A virus (A/Belarus/25/2009(H1N1)) se... 34.2 3.1
gb|CY052059.1| Influenza A virus (A/Belarus/24/2009(H1N1)) se... 34.2 3.1
gb|CY052057.1| Influenza A virus (A/Belarus/23/2009(H1N1)) se... 34.2 3.1
gb|CY052043.1| Influenza A virus (A/Catalonia/S1835/2009(H1N1... 34.2 3.1
gb|CY052041.1| Influenza A virus (A/Catalonia/S1834/2009(H1N1... 34.2 3.1
gb|CY052037.1| Influenza A virus (A/Catalonia/S1830/2009(H1N1... 34.2 3.1
gb|CY052035.1| Influenza A virus (A/Catalonia/S1829/2009(H1N1... 34.2 3.1
gb|CY052033.1| Influenza A virus (A/Catalonia/S1828/2009(H1N1... 34.2 3.1
gb|CY052021.1| Influenza A virus (A/Norway/3206-3/2009(H1N1))... 34.2 3.1
gb|CY051977.1| Influenza A virus (A/Catalonia/S1758/2009(H1N1... 34.2 3.1
gb|CY051956.1| Influenza A virus (A/Catalonia/S1698/2009(H1N1... 34.2 3.1
gb|CY051941.1| Influenza A virus (A/Catalonia/S1674/2009(H1N1... 34.2 3.1
gb|CY051938.1| Influenza A virus (A/Catalonia/S1672/2009(H1N1... 34.2 3.1
gb|CY051928.1| Influenza A virus (A/Catalonia/NS5408/2009(H1N... 34.2 3.1
gb|CY050320.1| Influenza A virus (A/Catalonia/S1641/2009(H1N1... 34.2 3.1
gb|CY050317.1| Influenza A virus (A/Catalonia/S1637/2009(H1N1... 34.2 3.1
gb|CY050314.1| Influenza A virus (A/Catalonia/S1632/2009(H1N1... 34.2 3.1
gb|CY050308.1| Influenza A virus (A/Catalonia/S1606/2009(H1N1... 34.2 3.1
gb|CY050305.1| Influenza A virus (A/Catalonia/S1605/2009(H1N1... 34.2 3.1
gb|CY049743.1| Influenza A virus (A/Catalonia/S1592/2009(H1N1... 34.2 3.1
gb|CY049737.1| Influenza A virus (A/Catalonia/S1587/2009(H1N1... 34.2 3.1
gb|CY049729.1| Influenza A virus (A/Catalonia/S1545/2009(H1N1... 34.2 3.1
gb|CY049711.1| Influenza A virus (A/Catalonia/S1490/2009(H1N1... 34.2 3.1
gb|CY049708.1| Influenza A virus (A/Catalonia/S1479/2009(H1N1... 34.2 3.1
gb|CY049705.1| Influenza A virus (A/Catalonia/S1478/2009(H1N1... 34.2 3.1
gb|CY049055.1| Influenza A virus (A/Catalonia/S1453/2009(H1N1... 34.2 3.1
gb|CY049052.1| Influenza A virus (A/Catalonia/S1436/2009(H1N1... 34.2 3.1
gb|CY049028.1| Influenza A virus (A/Catalonia/S1379/2009(H1N1... 34.2 3.1
gb|CY049025.1| Influenza A virus (A/Catalonia/S1369/2009(H1N1... 34.2 3.1
gb|CY049019.1| Influenza A virus (A/Catalonia/S1350/2009(H1N1... 34.2 3.1
gb|CY049016.1| Influenza A virus (A/Catalonia/S1333/2009(H1N1... 34.2 3.1
gb|CY049013.1| Influenza A virus (A/Catalonia/S1331/2009(H1N1... 34.2 3.1
gb|CY049004.1| Influenza A virus (A/Catalonia/S1304/2009(H1N1... 34.2 3.1
gb|CY049001.1| Influenza A virus (A/Catalonia/S1300/2009(H1N1... 34.2 3.1
gb|GU134732.1| Influenza A virus (A/Italy/179/2009(H1N1)) seg... 34.2 3.1
gb|GU134731.1| Influenza A virus (A/Italy/178/2009(H1N1)) seg... 34.2 3.1
gb|GU134730.1| Influenza A virus (A/Italy/177/2009(H1N1)) seg... 34.2 3.1
gb|GU134729.1| Influenza A virus (A/Italy/176/2009(H1N1)) seg... 34.2 3.1
gb|GU134727.1| Influenza A virus (A/Italy/174/2009(H1N1)) seg... 34.2 3.1
gb|GU134726.1| Influenza A virus (A/Italy/173/2009(H1N1)) seg... 34.2 3.1
gb|GU134724.1| Influenza A virus (A/Italy/171/2009(H1N1)) seg... 34.2 3.1
gb|GU134723.1| Influenza A virus (A/Italy/170/2009(H1N1)) seg... 34.2 3.1
gb|GU134721.1| Influenza A virus (A/Italy/168/2009(H1N1)) seg... 34.2 3.1
gb|GU134718.1| Influenza A virus (A/Italy/165/2009(H1N1)) seg... 34.2 3.1
gb|GU123921.1| Influenza A virus (A/Italy/154/2009(H1N1)) seg... 34.2 3.1
gb|GU123920.1| Influenza A virus (A/Italy/153/2009(H1N1)) seg... 34.2 3.1
gb|GU123918.1| Influenza A virus (A/Italy/151/2009(H1N1)) seg... 34.2 3.1
gb|GU123917.1| Influenza A virus (A/Italy/150/2009(H1N1)) seg... 34.2 3.1
gb|GU123914.1| Influenza A virus (A/Italy/147/2009(H1N1)) seg... 34.2 3.1
gb|GU123913.1| Influenza A virus (A/Italy/146/2009(H1N1)) seg... 34.2 3.1
gb|GU123912.1| Influenza A virus (A/Italy/158/2009(H1N1)) seg... 34.2 3.1
gb|GU123909.1| Influenza A virus (A/Italy/142/2009(H1N1)) seg... 34.2 3.1
gb|GU123907.1| Influenza A virus (A/Italy/140/2009(H1N1)) seg... 34.2 3.1
gb|GU123906.1| Influenza A virus (A/Italy/139/2009(H1N1)) seg... 34.2 3.1
gb|GU123905.1| Influenza A virus (A/Italy/138/2009(H1N1)) seg... 34.2 3.1
gb|GU123904.1| Influenza A virus (A/Italy/137/2009(H1N1)) seg... 34.2 3.1
gb|GU123903.1| Influenza A virus (A/Italy/136/2009(H1N1)) seg... 34.2 3.1
gb|GU065292.1| Influenza A virus (A/Poland/266/2009(H1N1)) se... 34.2 3.1
gb|GU065291.1| Influenza A virus (A/Poland/253/2009(H1N1)) se... 34.2 3.1
gb|GU065290.1| Influenza A virus (A/Poland/304/2009(H1N1)) se... 34.2 3.1
gb|CY047308.1| Influenza A virus (A/Catalonia/S1286/2009(H1N1... 34.2 3.1
gb|CY047291.1| Influenza A virus (A/Catalonia/S1273/2009(H1N1... 34.2 3.1
gb|CY047288.1| Influenza A virus (A/Catalonia/S1272/2009(H1N1... 34.2 3.1
gb|CY047279.1| Influenza A virus (A/Catalonia/S1269/2009(H1N1... 34.2 3.1
gb|CY047270.1| Influenza A virus (A/Catalonia/S1265/2009(H1N1... 34.2 3.1
gb|CY047267.1| Influenza A virus (A/Catalonia/S1260/2009(H1N1... 34.2 3.1
gb|CY047264.1| Influenza A virus (A/Catalonia/S1254/2009(H1N1... 34.2 3.1
gb|CY047258.1| Influenza A virus (A/Catalonia/S1249/2009(H1N1... 34.2 3.1
gb|CY047255.1| Influenza A virus (A/Catalonia/S1248/2009(H1N1... 34.2 3.1
gb|CY047246.1| Influenza A virus (A/Catalonia/S1242/2009(H1N1... 34.2 3.1
gb|CY047244.1| Influenza A virus (A/Catalonia/S1237/2009(H1N1... 34.2 3.1
gb|CY047241.1| Influenza A virus (A/Catalonia/S1236/2009(H1N1... 34.2 3.1
gb|CY047233.1| Influenza A virus (A/Catalonia/S1228/2009(H1N1... 34.2 3.1
gb|CY047231.1| Influenza A virus (A/Catalonia/S1227/2009(H1N1... 34.2 3.1
gb|CY047228.1| Influenza A virus (A/Catalonia/S1222/2009(H1N1... 34.2 3.1
gb|CY047222.1| Influenza A virus (A/Catalonia/S1215/2009(H1N1... 34.2 3.1
gb|CY047216.1| Influenza A virus (A/Catalonia/S1209/2009(H1N1... 34.2 3.1
gb|CY047204.1| Influenza A virus (A/Catalonia/S1205/2009(H1N1... 34.2 3.1
gb|CY047201.1| Influenza A virus (A/Catalonia/S1199/2009(H1N1... 34.2 3.1
gb|CY047189.1| Influenza A virus (A/Catalonia/S1187/2009(H1N1... 34.2 3.1
gb|CY047186.1| Influenza A virus (A/Catalonia/S1183/2009(H1N1... 34.2 3.1
gb|CY047183.1| Influenza A virus (A/Catalonia/S1182/2009(H1N1... 34.2 3.1
gb|CY047165.1| Influenza A virus (A/Catalonia/S1165/2009(H1N1... 34.2 3.1
gb|CY047159.1| Influenza A virus (A/Catalonia/S1161/2009(H1N1... 34.2 3.1
gb|CY047153.1| Influenza A virus (A/Catalonia/S1148/2009(H1N1... 34.2 3.1
gb|CY047138.1| Influenza A virus (A/Catalonia/S1120/2009(H1N1... 34.2 3.1
gb|CY047121.1| Influenza A virus (A/Catalonia/S1099/2009(H1N1... 34.2 3.1
gb|CY047084.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 34.2 3.1
gb|CY047081.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 34.2 3.1
gb|GQ497279.1| Influenza A virus (A/Poland/303/2009(H1N1)) se... 34.2 3.1
gb|GQ485663.1| Influenza A virus (A/Almati/01/2009(H1N1)) seg... 34.2 3.1
gb|GQ387441.1| Influenza A virus (A/Catalonia/382/2009(H1N1))... 34.2 3.1
gb|GQ387440.1| Influenza A virus (A/Catalonia/378/2009(H1N1))... 34.2 3.1
gb|GQ387402.1| Influenza A virus (A/Catalonia/604/2009(H1N1))... 34.2 3.1
gb|GQ387391.1| Influenza A virus (A/Catalonia/565/2009(H1N1))... 34.2 3.1
gb|GQ463958.1| Influenza A virus (A/Changsha/78/2009(H1N1)) s... 34.2 3.1
gb|GQ426220.1| Influenza A virus (A/Tomsk/01/2009(H1N1)) segm... 34.2 3.1
gb|GQ421204.1| Influenza A virus (A/Ancona/05/2009(H1N1)) seg... 34.2 3.1
gb|GQ409646.1| Influenza A virus (A/Athens/2294/2009(H1N1)) s... 34.2 3.1
gb|GQ396511.1| Influenza A virus (A/Changsha/05/2009(H1N1)) s... 34.2 3.1
gb|GQ379856.1| Influenza A virus (A/Catalonia/517/2009(H1N1))... 34.2 3.1
gb|GQ379852.1| Influenza A virus (A/Catalonia/502/2009(H1N1))... 34.2 3.1
gb|GQ379840.1| Influenza A virus (A/Catalonia/476/2009(H1N1))... 34.2 3.1
gb|GQ379833.1| Influenza A virus (A/Catalonia/442/2009(H1N1))... 34.2 3.1
gb|GQ369275.1| Influenza A virus (A/Stockholm/37/2009(H1N1)) ... 34.2 3.1
gb|GQ365448.1| Influenza A virus (A/Sapporo/1/2009(H1N1)) seg... 34.2 3.1
gb|GQ355297.1| Influenza A virus (A/Catalonia/387/2009(H1N1))... 34.2 3.1
gb|GQ351316.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 34.2 3.1
gb|GQ338380.1| Influenza A virus (A/Oklahoma/03/2009(H1N1)) s... 34.2 3.1
gb|GQ160533.1| Influenza A virus (A/New Jersey/01/2009(H1N1))... 34.2 3.1
dbj|AB434314.1| Influenza A virus (A/swine/Chonburi/NIAH977/2... 34.2 3.1
dbj|AB434306.1| Influenza A virus (A/swine/Chonburi/NIAH9469/... 34.2 3.1
gb|EU045385.1| Influenza A virus (A/swine/Italy/110093/2002(H... 34.2 3.1
gb|EF101756.1| Influenza A virus (A/Thailand/271/2005(H1N1)) ... 34.2 3.1