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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:33 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
C437T

gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 30.1 0.41
gb|CY054763.1| Influenza A virus (A/California/VRDL20/2009(H1... 30.1 0.41
gb|CY053922.1| Influenza A virus (A/Argentina/HNRG23/2009(H1N... 30.1 0.41
gb|CY053904.1| Influenza A virus (A/Argentina/HNRG15/2009(H1N... 30.1 0.41
gb|GU289665.1| Influenza A virus (A/swine/Wisconsin/R33f/2001... 30.1 0.41
gb|CY052743.1| Influenza A virus (A/Texas/45101424/2009(H1N1)... 30.1 0.41
gb|CY051807.1| Influenza A virus (A/New York/4870/2009(H1N1))... 30.1 0.41
gb|CY044212.1| Influenza A virus (A/Taiwan/T1339/2009(H1N1)) ... 30.1 0.41
gb|GQ385300.1| Influenza A virus (A/Toronto/0462/2009(H1N1)) ... 30.1 0.41
gb|CY040604.1| Influenza A virus (A/swine/North Carolina/9675... 30.1 0.41
gb|CY040590.1| Influenza A virus (A/swine/North Carolina/4162... 30.1 0.41
gb|CY040589.1| Influenza A virus (A/swine/North Carolina/3789... 30.1 0.41
gb|CY040588.1| Influenza A virus (A/swine/North Carolina/3527... 30.1 0.41
gb|CY040512.1| Influenza A virus (A/swine/Oklahoma/63607-6/20... 30.1 0.41
gb|CY040481.1| Influenza A virus (A/swine/Minnesota/63607-17/... 30.1 0.41
gb|FJ750522.1| Influenza A virus (A/ferret/Iowa/15828B/2008(H... 30.1 0.41
gb|EU798779.1| Influenza A virus (A/swine/Korea/CAS08/2005(H1... 30.1 0.41
gb|EU139832.1| Influenza A virus (A/swine/Iowa/00239/2004(H1N... 30.1 0.41
gb|EU139829.1| Influenza A virus (A/swine/North Carolina/3688... 30.1 0.41
gb|AY129156.1| Influenza A virus (A/Swine/Korea/CY02/02(H1N2)... 30.1 0.41
gb|AY060049.1| Influenza A virus (A/SW/MO/1877/01(H1N2)) hema... 30.1 0.41
gb|AY060037.1| Influenza A virus (A/SW/MN/3227/00(H1N2)) hema... 30.1 0.41
gb|AY060035.1| Influenza A virus (A/SW/MN/16356/01(H1N2)) hem... 30.1 0.41
gb|AY233393.1| Influenza A virus (A/duck/NC/91347/01(H1N2)) h... 30.1 0.41
gb|AF455679.1| Influenza A virus (A/Swine/Iowa/930/01(H1N2)) ... 30.1 0.41
gb|AF455678.1| Influenza A virus (A/Swine/Minnesota/55551/00 ... 30.1 0.41
gb|AF455676.1| Influenza A virus (A/Swine/North Carolina/9822... 30.1 0.41
gb|AY052778.1| Influenza A virus (A/Swine/Minnesota/1713/00/(... 30.1 0.41

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:34 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
A716G (D225G)

gb|GU562458.1| Influenza A virus (A/Karasuk/01/2010(H1N1)) se... 31.9 0.12
gb|GU562450.1| Influenza A virus (A/Perm/01/2009(H1N1)) segme... 31.9 0.12
gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 31.9 0.12
gb|CY054731.1| Influenza A virus (A/California/VRDL7/2009(H1N... 31.9 0.12
gb|GU560024.1| Influenza A virus (A/Taraz/01/2009(H1N1)) segm... 31.9 0.12
gb|GU480938.1| Influenza A virus (A/Tomsk/08/2009(H1N1)) segm... 31.9 0.12
gb|GU451254.1| Influenza A virus (A/Tver/IIV2969/2009(H1N1)) ... 31.9 0.12
gb|CY054280.1| Influenza A virus (A/Rio de Janeiro/5826/2009(... 31.9 0.12
gb|GU371263.1| Influenza A virus (A/Bryansk/IIV2971/2009(H1N1... 31.9 0.12
gb|CY053907.1| Influenza A virus (A/Argentina/HNRG16/2009(H1N... 31.9 0.12
gb|GU367327.1| Influenza A virus (A/Salekhard/01/2009(H1N1)) ... 31.9 0.12
gb|GU367317.1| Influenza A virus (A/Tomsk/07/2009(H1N1)) segm... 31.9 0.12
gb|GU367315.1| Influenza A virus (A/Abakan/02/2009(H1N1)) seg... 31.9 0.12
gb|CY053695.1| Influenza A virus (A/Catalonia/NS092145684/200... 31.9 0.12
gb|GU290190.1| Influenza A virus (A/Utah/42/2009(H1N1)) segme... 31.9 0.12
gb|GU211219.1| Influenza A virus (A/Vladivostok/01/2009(H1N1)... 31.9 0.12
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 31.9 0.12
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 31.9 0.12
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 31.9 0.12
gb|CY047074.1| Influenza A virus (A/Catalonia/NS1706/2009(H1N... 31.9 0.12
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 31.9 0.12
gb|GQ915018.1| Influenza A virus (A/Sao Paulo/53225/2009(H1N1... 31.9 0.12
gb|GQ915017.1| Influenza A virus (A/Sao Paulo/53206/2009(H1N1... 31.9 0.12
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 31.9 0.12
gb|GQ379822.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 31.9 0.12
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 31.9 0.12
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 31.9 0.12
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 31.9 0.12
gb|GQ200237.1| Influenza A virus (A/Georgia/01/2009(H1N1)) se... 31.9 0.12
gb|GQ162194.1| Influenza A virus (A/Mexico/3955/2009(H1N1)) s... 31.9 0.12
gb|GQ160568.1| Influenza A virus (A/New York/04/2009(H1N1)) s... 31.9 0.12
gb|GQ132145.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 31.9 0.12

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:36 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
A1280G

gb|GU562450.1| Influenza A virus (A/Perm/01/2009(H1N1)) segme... 38.2 0.19
gb|CY055027.1| Influenza A virus (A/California/VRDL68/2009(H1... 38.2 0.19
gb|CY054995.1| Influenza A virus (A/California/VRDL61/2009(H1... 38.2 0.19
gb|CY054923.1| Influenza A virus (A/California/VRDL43/2009(H1... 38.2 0.19
gb|CY054875.1| Influenza A virus (A/California/VRDL35/2009(H1... 38.2 0.19
gb|CY054819.1| Influenza A virus (A/California/VRDL28/2009(H1... 38.2 0.19
gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 38.2 0.19
gb|CY054763.1| Influenza A virus (A/California/VRDL20/2009(H1... 38.2 0.19
gb|CY054755.1| Influenza A virus (A/California/VRDL19/2009(H1... 38.2 0.19
gb|CY054747.1| Influenza A virus (A/California/VRDL9/2009(H1N... 38.2 0.19
gb|CY054739.1| Influenza A virus (A/California/VRDL8/2009(H1N... 38.2 0.19
gb|GU480922.1| Influenza A virus (A/swine/IL/32974/2009(H1N1)... 38.2 0.19
gb|GU480943.1| Influenza A virus (A/Kurgan/01/2009(H1N1)) seg... 38.2 0.19
gb|CY054678.1| Influenza A virus (A/Russia/180/2009(H1N1)) se... 38.2 0.19
gb|CY054670.1| Influenza A virus (A/Russia/171/2009(H1N1)) se... 38.2 0.19
gb|CY054646.1| Influenza A virus (A/Russia/19/2009(H1N1)) seg... 38.2 0.19
gb|CY054638.1| Influenza A virus (A/Russia/12/2009(H1N1)) seg... 38.2 0.19
gb|CY054630.1| Influenza A virus (A/Russia/4/2009(H1N1)) segm... 38.2 0.19
gb|CY054584.1| Influenza A virus (A/Catalonia/S2151/2009(H1N1... 38.2 0.19
gb|CY054575.1| Influenza A virus (A/Catalonia/S2120/2009(H1N1... 38.2 0.19
gb|GU470879.1| Influenza A virus (A/swine/Indiana/27007/2009(... 38.2 0.19
gb|CY054548.1| Influenza A virus (A/Bayanulgii/9912/2009(H1N1... 38.2 0.19
gb|CY054546.1| Influenza A virus (A/Unmugobi/9586/2009(H1N1))... 38.2 0.19
gb|GU451254.1| Influenza A virus (A/Tver/IIV2969/2009(H1N1)) ... 38.2 0.19
dbj|AB540654.1| Influenza A virus (A/Nagasaki/HA-46/2009(H1N1... 38.2 0.19
gb|CY054280.1| Influenza A virus (A/Rio de Janeiro/5826/2009(... 38.2 0.19
gb|GU369674.1| Influenza A virus (A/Ankara/30/2009(H1N1)) seg... 38.2 0.19
gb|GU369671.1| Influenza A virus (A/Ankara/27/2009(H1N1)) seg... 38.2 0.19
gb|GU369655.1| Influenza A virus (A/Ankara/11/2009(H1N1)) seg... 38.2 0.19
gb|GU369654.1| Influenza A virus (A/Ankara/10/2009(H1N1)) seg... 38.2 0.19
gb|GU369653.1| Influenza A virus (A/Ankara/09/2009(H1N1)) seg... 38.2 0.19
gb|GU371263.1| Influenza A virus (A/Bryansk/IIV2971/2009(H1N1... 38.2 0.19
gb|GU371256.1| Influenza A virus (A/Orenburg/IIV2974/2009(H1N... 38.2 0.19
gb|GU367327.1| Influenza A virus (A/Salekhard/01/2009(H1N1)) ... 38.2 0.19
gb|CY053744.1| Influenza A virus (A/Russia/190/2009(H1N1)) se... 38.2 0.19
gb|CY053736.1| Influenza A virus (A/Russia/178/2009(H1N1)) se... 38.2 0.19
gb|CY053728.1| Influenza A virus (A/Russia/74/2009(H1N1)) seg... 38.2 0.19
dbj|AB539048.1| Influenza A virus (A/Nagasaki/NU-3/2009(H1N1)... 38.2 0.19
dbj|AB539047.1| Influenza A virus (A/Nagasaki/HA-49/2009(H1N1... 38.2 0.19
gb|CY053689.1| Influenza A virus (A/Russia/191/2009(H1N1)) se... 38.2 0.19
gb|CY053681.1| Influenza A virus (A/Russia/14/2009(H1N1)) seg... 38.2 0.19
gb|GU338362.1| Influenza A virus (A/Landstuhl/5950/2009(H1N1)... 38.2 0.19
gb|CY053627.1| Influenza A virus (A/Russia/165/2009(H1N1)) se... 38.2 0.19
gb|CY053416.1| Influenza A virus (A/Russia/149/2009(H1N1)) se... 38.2 0.19
gb|CY053373.1| Influenza A virus (A/Catalonia/S1935/2009(H1N1... 38.2 0.19
gb|CY052266.1| Influenza A virus (A/Texas/42102708/2009(H1N1)... 38.2 0.19
gb|CY052146.1| Influenza A virus (A/New York/4398/2009(H1N1))... 38.2 0.19
gb|CY052839.1| Influenza A virus (A/Texas/45132202/2009(H1N1)... 38.2 0.19
gb|CY052743.1| Influenza A virus (A/Texas/45101424/2009(H1N1)... 38.2 0.19
gb|CY052695.1| Influenza A virus (A/Texas/45083819/2009(H1N1)... 38.2 0.19
gb|CY052615.1| Influenza A virus (A/Texas/44302533/2009(H1N1)... 38.2 0.19
gb|CY052551.1| Influenza A virus (A/Texas/45122774/2009(H1N1)... 38.2 0.19
gb|CY052503.1| Influenza A virus (A/Texas/45104026/2009(H1N1)... 38.2 0.19
gb|CY052366.1| Influenza A virus (A/Zavkhan/8299/2009(H1N1)) ... 38.2 0.19
dbj|AB536770.1| Influenza A virus (A/Nagasaki/HA-62/2009(H1N1... 38.2 0.19
dbj|AB536769.1| Influenza A virus (A/Nagasaki/HA-58/2009(H1N1... 38.2 0.19
dbj|AB535747.1| Influenza A virus (A/Nagasaki/HA-60/2009(H1N1... 38.2 0.19
dbj|AB535743.1| Influenza A virus (A/Nagasaki/HA-50/2009(H1N1... 38.2 0.19
dbj|AB535742.1| Influenza A virus (A/Nagasaki/HA-48/2009(H1N1... 38.2 0.19
dbj|AB535741.1| Influenza A virus (A/Nagasaki/NU-2/2009(H1N1)... 38.2 0.19
dbj|AB535740.1| Influenza A virus (A/Nagasaki/HA-37/2009(H1N1... 38.2 0.19
dbj|AB535739.1| Influenza A virus (A/Nagasaki/HA-30/2009(H1N1... 38.2 0.19
dbj|AB535738.1| Influenza A virus (A/Nagasaki/HA-24/2009(H1N1... 38.2 0.19
gb|CY052030.1| Influenza A virus (A/Catalonia/S1827/2009(H1N1... 38.2 0.19
gb|CY052026.1| Influenza A virus (A/Catalonia/NS7362/2009(H1N... 38.2 0.19
gb|CY052014.1| Influenza A virus (A/Norway/4021/2009(H1N1)) s... 38.2 0.19
gb|CY052013.1| Influenza A virus (A/Norway/4020/2009(H1N1)) s... 38.2 0.19
gb|CY052012.1| Influenza A virus (A/Norway/3855/2009(H1N1)) s... 38.2 0.19
gb|CY052006.1| Influenza A virus (A/Norway/3440/2009(H1N1)) s... 38.2 0.19
gb|CY052004.1| Influenza A virus (A/Norway/3371/2009(H1N1)) s... 38.2 0.19
gb|CY052003.1| Influenza A virus (A/Norway/3370/2009(H1N1)) s... 38.2 0.19
gb|CY051998.1| Influenza A virus (A/Norway/3364-2/2009(H1N1))... 38.2 0.19
gb|CY051994.1| Influenza A virus (A/Norway/3278/2009(H1N1)) s... 38.2 0.19
gb|CY051989.1| Influenza A virus (A/Norway/2924/2009(H1N1)) s... 38.2 0.19
gb|CY051982.1| Influenza A virus (A/Catalonia/S1761/2009(H1N1... 38.2 0.19
gb|CY051967.1| Influenza A virus (A/Catalonia/S1751/2009(H1N1... 38.2 0.19
gb|CY051964.1| Influenza A virus (A/Catalonia/S1748/2009(H1N1... 38.2 0.19
gb|CY051949.1| Influenza A virus (A/Catalonia/S1687/2009(H1N1... 38.2 0.19
gb|GU211235.1| Influenza A virus (A/Omsk/02/2009(H1N1)) segme... 38.2 0.19
gb|CY050846.1| Influenza A virus (A/Ulaanbaatar/6133/2009(H1N... 38.2 0.19
gb|CY050845.1| Influenza A virus (A/Ulaanbaatar/6266/2009(H1N... 38.2 0.19
gb|CY051807.1| Influenza A virus (A/New York/4870/2009(H1N1))... 38.2 0.19
gb|CY051783.1| Influenza A virus (A/New York/4844/2009(H1N1))... 38.2 0.19
gb|CY049963.1| Influenza A virus (A/Santo Domingo/WR1059N/200... 38.2 0.19
gb|CY049955.1| Influenza A virus (A/Santo Domingo/WR1058N/200... 38.2 0.19
gb|CY049947.1| Influenza A virus (A/Santo Domingo/WR1057N/200... 38.2 0.19
gb|CY049571.1| Influenza A virus (A/Singapore/ON1156/2009(H1N... 38.2 0.19
gb|CY049068.1| Influenza A virus (A/Singapore/ON129/2009(H1N1... 38.2 0.19
dbj|AB530489.1| Influenza A virus (A/Nagasaki/NU-1/2009(H1N1)... 38.2 0.19
dbj|AB530487.1| Influenza A virus (A/Nagasaki/HA-42/2009(H1N1... 38.2 0.19
dbj|AB530486.1| Influenza A virus (A/Nagasaki/HA-41/2009(H1N1... 38.2 0.19
dbj|AB530485.1| Influenza A virus (A/Nagasaki/HA-40/2009(H1N1... 38.2 0.19
dbj|AB530484.1| Influenza A virus (A/Nagasaki/HA-39/2009(H1N1... 38.2 0.19
dbj|AB530483.1| Influenza A virus (A/Nagasaki/HA-38/2009(H1N1... 38.2 0.19
dbj|AB530482.1| Influenza A virus (A/Nagasaki/HA-36/2009(H1N1... 38.2 0.19
dbj|AB530481.1| Influenza A virus (A/Nagasaki/HA-35/2009(H1N1... 38.2 0.19
dbj|AB530480.1| Influenza A virus (A/Nagasaki/HA-34/2009(H1N1... 38.2 0.19
dbj|AB530479.1| Influenza A virus (A/Nagasaki/HA-33/2009(H1N1... 38.2 0.19
dbj|AB530478.1| Influenza A virus (A/Nagasaki/HA-32/2009(H1N1... 38.2 0.19
dbj|AB530477.1| Influenza A virus (A/Nagasaki/HA-31/2009(H1N1... 38.2 0.19
dbj|AB530476.1| Influenza A virus (A/Nagasaki/HA-29/2009(H1N1... 38.2 0.19
dbj|AB530475.1| Influenza A virus (A/Nagasaki/HA-28/2009(H1N1... 38.2 0.19
dbj|AB530474.1| Influenza A virus (A/Nagasaki/HA-27/2009(H1N1... 38.2 0.19
dbj|AB530473.1| Influenza A virus (A/Nagasaki/HA-26/2009(H1N1... 38.2 0.19
dbj|AB530472.1| Influenza A virus (A/Nagasaki/HA-25/2009(H1N1... 38.2 0.19
dbj|AB530471.1| Influenza A virus (A/Nagasaki/HA-22/2009(H1N1... 38.2 0.19
dbj|AB530470.1| Influenza A virus (A/Nagasaki/HA-18/2009(H1N1... 38.2 0.19
dbj|AB530469.1| Influenza A virus (A/Nagasaki/HA-17/2009(H1N1... 38.2 0.19
dbj|AB530468.1| Influenza A virus (A/Nagasaki/HA-16/2009(H1N1... 38.2 0.19
dbj|AB530466.1| Influenza A virus (A/Nagasaki/HA-14/2009(H1N1... 38.2 0.19
dbj|AB530465.1| Influenza A virus (A/Nagasaki/HA-13/2009(H1N1... 38.2 0.19
dbj|AB530464.1| Influenza A virus (A/Nagasaki/HA-12/2009(H1N1... 38.2 0.19
dbj|AB530463.1| Influenza A virus (A/Nagasaki/HA-11/2009(H1N1... 38.2 0.19
dbj|AB530462.1| Influenza A virus (A/Nagasaki/HA-10/2009(H1N1... 38.2 0.19
gb|CY049713.1| Influenza A virus (A/Catalonia/S1501/2009(H1N1... 38.2 0.19
gb|CY049039.1| Influenza A virus (A/Catalonia/S1402/2009(H1N1... 38.2 0.19
gb|GU117765.1| Influenza A virus (A/Nagasaki/I01/2009(H1N1)) ... 38.2 0.19
gb|CY047275.1| Influenza A virus (A/Catalonia/S1268/2009(H1N1... 38.2 0.19
gb|CY047272.1| Influenza A virus (A/Catalonia/S1267/2009(H1N1... 38.2 0.19
gb|CY047179.1| Influenza A virus (A/Catalonia/S1181/2009(H1N1... 38.2 0.19
gb|CY047176.1| Influenza A virus (A/Catalonia/S1179/2009(H1N1... 38.2 0.19
gb|CY047161.1| Influenza A virus (A/Catalonia/S1162/2009(H1N1... 38.2 0.19
gb|CY047118.1| Influenza A virus (A/Catalonia/S1096/2009(H1N1... 38.2 0.19
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 38.2 0.19
gb|GQ894911.1| Influenza A virus (A/Oregon/20/2009(H1N1)) seg... 38.2 0.19
gb|GQ894830.1| Influenza A virus (A/Rhode Island/08/2009(H1N1... 38.2 0.19
gb|CY046065.1| Influenza A virus (A/Italy/132/2009(H1N1)) seg... 38.2 0.19
gb|CY046062.1| Influenza A virus (A/Italy/129/2009(H1N1)) seg... 38.2 0.19
gb|GQ527165.1| Influenza A virus (A/Singapore/TLL51/2009(H1N1... 38.2 0.19
gb|CY044997.1| Influenza A virus (A/New York/3828/2009(H1N1))... 38.2 0.19
gb|CY044080.1| Influenza A virus (A/New York/3715/2009(H1N1))... 38.2 0.19
gb|CY044072.1| Influenza A virus (A/New York/3702/2009(H1N1))... 38.2 0.19
gb|GQ414768.1| Influenza A virus (A/Sao Paulo/43812/2009(H1N1... 38.2 0.19
gb|GQ377095.1| Influenza A virus (A/California/24/2009(H1N1))... 38.2 0.19
gb|GQ359765.1| Influenza A virus (A/Stockholm/31/2009(H1N1)) ... 38.2 0.19
gb|GQ292961.1| Influenza A virus (A/Mexico City/22/2009(H1N1)... 38.2 0.19
gb|GQ232085.1| Influenza A virus (A/Guangdong/02/2009(H1N1)) ... 38.2 0.19
gb|GQ223435.1| Influenza A virus (A/Guangdong/05/2009(H1N1)) ... 38.2 0.19
gb|GQ132144.1| Influenza A virus (A/Canada-ON/RV1529/2009(H1N... 38.2 0.19

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:37 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
G1360A

gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 37.4 0.003
gb|CY054763.1| Influenza A virus (A/California/VRDL20/2009(H1... 37.4 0.003
gb|CY052743.1| Influenza A virus (A/Texas/45101424/2009(H1N1)... 37.4 0.003
gb|CY024925.1| Influenza A virus (A/Ohio/3559/1988(H1N1)) seg... 37.4 0.003
gb|EF101741.1| Influenza A virus (A/Philippines/344/2004(H1N2... 37.4 0.003
gb|CY014642.1| Influenza A virus (A/duck/Potsdam/1402-6/1986(... 37.4 0.003
gb|DQ280203.1| Influenza A virus (A/swine/Alberta/56626/03(H1... 37.4 0.003
gb|DQ280195.1| Influenza A virus (A/swine/Ontario/57561/03(H1... 37.4 0.003
gb|AF082042.1| Influenza A virus (A/duck/Potsdam/1402-6/86(H5... 37.4 0.003

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:41 pm 
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Note that in the above travel log, all markers except for D225G are found in A/California/VRDL27/2009 and A/Texas/45101424/2009. In fact the markers for the Texas sequences are listed, so A/California/VRDL27/2009 is the Texas sequence, plus D225G.

It is the appending of the same D225G onto multiple genetic backgrounds that throws "random mutations" into the circular file.

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:58 pm 
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Location: Pittsburgh, PA USA
Travel log for VRDL7

G79A
gb|CY054963.1| Influenza A virus (A/California/VRDL52/2009(H1... 34.2 3.0
gb|CY054795.1| Influenza A virus (A/California/VRDL25/2009(H1... 34.2 3.0
gb|CY054779.1| Influenza A virus (A/California/VRDL22/2009(H1... 34.2 3.0
gb|CY054731.1| Influenza A virus (A/California/VRDL7/2009(H1N... 34.2 3.0
gb|GU369650.1| Influenza A virus (A/Ankara/06/2009(H1N1)) seg... 34.2 3.0
gb|GU369646.1| Influenza A virus (A/Ankara/03/2009(H1N1)) seg... 34.2 3.0
gb|CY051623.1| Influenza A virus (A/New York/4607/2009(H1N1))... 34.2 3.0
gb|GQ414764.1| Influenza A virus (A/Sao Paulo/2056/2009(H1N1)... 34.2 3.0

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:59 pm 
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T598C (S185P)

gb|CY054731.1| Influenza A virus (A/California/VRDL7/2009(H1N... 34.2 3.0
gb|GU369661.1| Influenza A virus (A/Ankara/17/2009(H1N1)) seg... 34.2 3.0
gb|CY053645.1| Influenza A virus (A/swine/4/Mexico/2009(H1N1)... 34.2 3.0

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 9:59 pm 
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Joined: Wed Aug 19, 2009 10:42 am
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A716G (D225G)

gb|GU562458.1| Influenza A virus (A/Karasuk/01/2010(H1N1)) se... 31.9 0.12
gb|GU562450.1| Influenza A virus (A/Perm/01/2009(H1N1)) segme... 31.9 0.12
gb|CY054811.1| Influenza A virus (A/California/VRDL27/2009(H1... 31.9 0.12
gb|CY054731.1| Influenza A virus (A/California/VRDL7/2009(H1N... 31.9 0.12
gb|GU560024.1| Influenza A virus (A/Taraz/01/2009(H1N1)) segm... 31.9 0.12
gb|GU480938.1| Influenza A virus (A/Tomsk/08/2009(H1N1)) segm... 31.9 0.12
gb|GU451254.1| Influenza A virus (A/Tver/IIV2969/2009(H1N1)) ... 31.9 0.12
gb|CY054280.1| Influenza A virus (A/Rio de Janeiro/5826/2009(... 31.9 0.12
gb|GU371263.1| Influenza A virus (A/Bryansk/IIV2971/2009(H1N1... 31.9 0.12
gb|CY053907.1| Influenza A virus (A/Argentina/HNRG16/2009(H1N... 31.9 0.12
gb|GU367327.1| Influenza A virus (A/Salekhard/01/2009(H1N1)) ... 31.9 0.12
gb|GU367317.1| Influenza A virus (A/Tomsk/07/2009(H1N1)) segm... 31.9 0.12
gb|GU367315.1| Influenza A virus (A/Abakan/02/2009(H1N1)) seg... 31.9 0.12
gb|CY053695.1| Influenza A virus (A/Catalonia/NS092145684/200... 31.9 0.12
gb|GU290190.1| Influenza A virus (A/Utah/42/2009(H1N1)) segme... 31.9 0.12
gb|GU211219.1| Influenza A virus (A/Vladivostok/01/2009(H1N1)... 31.9 0.12
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 31.9 0.12
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 31.9 0.12
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 31.9 0.12
gb|CY047074.1| Influenza A virus (A/Catalonia/NS1706/2009(H1N... 31.9 0.12
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 31.9 0.12
gb|GQ915018.1| Influenza A virus (A/Sao Paulo/53225/2009(H1N1... 31.9 0.12
gb|GQ915017.1| Influenza A virus (A/Sao Paulo/53206/2009(H1N1... 31.9 0.12
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 31.9 0.12
gb|GQ379822.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 31.9 0.12
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 31.9 0.12
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 31.9 0.12
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 31.9 0.12
gb|GQ200237.1| Influenza A virus (A/Georgia/01/2009(H1N1)) se... 31.9 0.12
gb|GQ162194.1| Influenza A virus (A/Mexico/3955/2009(H1N1)) s... 31.9 0.12
gb|GQ160568.1| Influenza A virus (A/New York/04/2009(H1N1)) s... 31.9 0.12
gb|GQ132145.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 31.9

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niman
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 10:09 pm 
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As seen in the two sets of travel logs, the two isolates from California are distinct from each other, as well as the many Ukraine and Russia sequences with D225G, D225N, or both. These each represent seperate acquistions of D225G or D225N and render "random mutations" null and void.

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cpg
 Post subject: Re: D225A in California
PostPosted: Thu Jan 28, 2010 11:45 pm 
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Joined: Fri Sep 11, 2009 8:30 am
Posts: 309
niman wrote:
As seen in the two sets of travel logs, the two isolates from California are distinct from each other, as well as the many Ukraine and Russia sequences with D225G, D225N, or both. These each represent seperate acquistions of D225G or D225N and render "random mutations" null and void.



''Spontanous'' random mutations !!!

Wonder when the penny will drop for WHO. This week, next week or will they stick with their paradigm for as long as possible.
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