Rhiza Labs FluTracker Forum

The first H1N1 sequence of 2010 has been published. It is from Russian lung and has D225G.

LOCUS GU562458 1752 bp cRNA linear VRL 25-JAN-2010
DEFINITION Influenza A virus (A/Karasuk/01/2010(H1N1)) segment 4 hemagglutinin
(HA) gene, complete cds.
ACCESSION GU562458
VERSION GU562458.1 GI:284472248
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/Karasuk/01/2010(H1N1))
ORGANISM Influenza A virus (A/Karasuk/01/2010(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1752)
AUTHORS Susloparov,I.M., Sharshov,K.A., Shestopalov,A.M. and Drozdov,I.G.
TITLE Isolation and identification of a novel swine-origin H1N1 influenza
A virus in Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1752)
AUTHORS Susloparov,I.M., Sharshov,K.A., Durymanov,A.G., Shestopalov,A.M.
and Drozdov,I.G.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2010) Federal State Research Institution - State
Research Center of Virology and Biotechnology Vector, Federal
Service for Surveillance on Consumer Rights Protection and Human
Well-Being, Koltsovo, Novosibirsk Region 630559, Russia
COMMENT GenBank Accession Numbers GU562458-GU562465 represent sequences
from the 8 segments of Influenza A virus (A/Karasuk/01/2010(H1N1)).

Swine influenza A (H1N1) virus isolated during human swine flu
outbreak of 2009-2010.
FEATURES Location/Qualifiers
source 1..1752
/organism="Influenza A virus (A/Karasuk/01/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/Karasuk/01/2010"
/serotype="H1N1"
/isolation_source="lung"
/host="Homo sapiens"
/db_xref="taxon:713104"
/segment="4"
/country="Russia"
/collection_date="04-Jan-2010"
/note="lineage: swl"
gene 21..1721
/gene="HA"
CDS 21..1721
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADB90370.1"
/db_xref="GI:284472249"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDPNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVRGQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI"
sig_peptide 21..71
/gene="HA"
mat_peptide 72..1052
/gene="HA"
/product="HA1"
mat_peptide 1053..1718
/gene="HA"
/product="HA2"
ORIGIN
1 ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctatat acatttgcaa
61 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag
121 acacagtact agaaaagaat gtaacagtaa cacactctgt taaccttcta gaagacaagc
181 ataacgggaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca
241 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agctcatggt
301 cctacattgt ggaaacatct agttcagaca atggaacgtg ttacccagga gatttcatcg
361 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgagatat
421 tccccaagac aagttcatgg cccaatcatg acccgaacaa aggtgtaacg gcagcatgtc
481 ctcatgctgg agcaaaaagc ttctacaaaa atttaatatg gctagttaaa aaaggaaatt
541 catacccaaa gctcagcaaa tcctacatta atgataaagg gaaagaagtc ctcgtgctat
601 ggggcattca ccatccatct actagtgctg accaacaaag tctctatcag aatgcagatg
661 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaataa
721 gacccaaagt gaggggtcaa gaagggagaa tgaactatta ctggacacta gtagagccgg
781 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcgcaa
841 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gattgcaata
901 caacttgtca gacacccaag ggtgctataa acaccagcct cccatttcag aatatacatc
961 cgatcacaat tggaaaatgt ccaaaatatg taaaaagcac aaaattgaga ctggccacag
1021 gattgaggaa tgtcccgtct attcaatcta gaggcctatt tggggccatt gccggtttca
1081 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc
1141 aggggtcagg atatgcagcc gacctgaaga gcacacagaa tgccattgac gagattacta
1201 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagta ggtaaagagt
1261 tcaaccacct ggaaaaaaga atagagaatt taaataaaaa agttgatgat ggtttcctgg
1321 acatttggac ttacaatgcc gaactgttgg ttctattgga aaatgaaaga actttggact
1381 accacgattc aaatgtgaag aacttatatg aaaaggtaag aagccagtta aaaaacaatg
1441 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgataac acgtgcatgg
1501 aaagtgtcaa aaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca
1561 gagaagaaat agatggggta aagctggaat caacaaggat ttaccagatt ttggcgatct
1621 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agtttctgga
1681 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaagca
1741 tgagaaaaac ac

HA travel log

gb|GU560008.1| Influenza A virus (A/Tomsk/05/2009(H1N1)) segm... 36.2 0.77
gb|GU480939.1| Influenza A virus (A/Habarovsk/01/2009(H1N1)) ... 36.2 0.77
gb|GU480938.1| Influenza A virus (A/Tomsk/08/2009(H1N1)) segm... 36.2 0.77
gb|CY054662.1| Influenza A virus (A/Russia/100/2009(H1N1)) se... 36.2 0.77
gb|GU371272.1| Influenza A virus (A/Hunan Furong/SWL4224/2009... 36.2 0.77
gb|GU367317.1| Influenza A virus (A/Tomsk/07/2009(H1N1)) segm... 36.2 0.77
gb|GU361111.1| Influenza A virus (A/ShandongTaishan/1616/2009... 36.2 0.77
gb|CY053353.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 36.2 0.77
gb|CY053348.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 36.2 0.77
gb|CY053338.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 36.2 0.77
gb|GU271944.1| Influenza A virus (A/Chita/01/2009(H1N1)) segm... 36.2 0.77
gb|CY050845.1| Influenza A virus (A/Ulaanbaatar/6266/2009(H1N... 36.2 0.77
gb|CY050844.1| Influenza A virus (A/Ulaanbaatar/5882/2009(H1N... 36.2 0.77
gb|CY051695.1| Influenza A virus (A/New York/4777/2009(H1N1))... 36.2 0.77
gb|GU198201.1| Influenza A virus (A/Nanjing/3/2009(H1N1)) seg... 36.2 0.77
gb|CY047713.1| Influenza A virus (A/Hangzhou/2/2009(H1N1)) se... 36.2 0.77
gb|GU057021.1| Influenza A virus (A/Chengdu/54/2009(H1N1)) se... 36.2 0.77
gb|GU057020.1| Influenza A virus (A/Chengdu/47/2009(H1N1)) se... 36.2 0.77
gb|GU057019.1| Influenza A virus (A/Chengdu/40/2009(H1N1)) se... 36.2 0.77
gb|GU057018.1| Influenza A virus (A/Chengdu/39/2009(H1N1)) se... 36.2 0.77
gb|GU057017.1| Influenza A virus (A/Chengdu/33/2009(H1N1)) se... 36.2 0.77
gb|GU057016.1| Influenza A virus (A/Chengdu/31/2009(H1N1)) se... 36.2 0.77
gb|GU057015.1| Influenza A virus (A/Chengdu/21/2009(H1N1)) se... 36.2 0.77
gb|GU057014.1| Influenza A virus (A/Chengdu/18/2009(H1N1)) se... 36.2 0.77
gb|GU057013.1| Influenza A virus (A/Chengdu/14/2009(H1N1)) se... 36.2 0.77
gb|GU057012.1| Influenza A virus (A/Chengdu/06/2009(H1N1)) se... 36.2 0.77
gb|GU057011.1| Influenza A virus (A/Chengdu/04/2009(H1N1)) se... 36.2 0.77
gb|GU057010.1| Influenza A virus (A/Chengdu/03/2009(H1N1)) se... 36.2 0.77

D225G

gb|GU560024.1| Influenza A virus (A/Taraz/01/2009(H1N1)) segm... 32.2 12
gb|GU480938.1| Influenza A virus (A/Tomsk/08/2009(H1N1)) segm... 32.2 12
gb|GU451254.1| Influenza A virus (A/Tver/IIV2969/2009(H1N1)) ... 32.2 12
gb|CY054280.1| Influenza A virus (A/Rio de Janeiro/5826/2009(... 32.2 12
gb|GU371263.1| Influenza A virus (A/Bryansk/IIV2971/2009(H1N1... 32.2 12
gb|CY053907.1| Influenza A virus (A/Argentina/HNRG16/2009(H1N... 32.2 12
gb|GU367327.1| Influenza A virus (A/Salekhard/01/2009(H1N1)) ... 32.2 12
gb|GU367317.1| Influenza A virus (A/Tomsk/07/2009(H1N1)) segm... 32.2 12
gb|GU367315.1| Influenza A virus (A/Abakan/02/2009(H1N1)) seg... 32.2 12
gb|CY053695.1| Influenza A virus (A/Catalonia/NS092145684/200... 32.2 12
gb|GU290190.1| Influenza A virus (A/Utah/42/2009(H1N1)) segme... 32.2 12
gb|CY052019.1| Influenza A virus (A/Norway/3206-3/2009(H1N1))... 32.2 12
gb|GU211219.1| Influenza A virus (A/Vladivostok/01/2009(H1N1)... 32.2 12
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 32.2 12
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 32.2 12
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 32.2 12
gb|CY047083.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 32.2 12
gb|CY047080.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 32.2 12
gb|CY047074.1| Influenza A virus (A/Catalonia/NS1706/2009(H1N... 32.2 12
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 32.2 12
gb|GQ915017.1| Influenza A virus (A/Sao Paulo/53206/2009(H1N1... 32.2 12
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 32.2 12
gb|GQ379822.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 32.2 12
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 32.2 12
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 32.2 12
gb|GQ229348.1| Influenza A virus (A/swine/Hong Kong/NS857/200... 32.2 12
gb|GQ229261.1| Influenza A virus (A/swine/Hong Kong/NS837/200... 32.2 12
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 32.2 12
gb|GQ200237.1| Influenza A virus (A/Georgia/01/2009(H1N1)) se... 32.2 12
gb|GQ162194.1| Influenza A virus (A/Mexico/3955/2009(H1N1)) s... 32.2 12
gb|GQ160568.1| Influenza A virus (A/New York/04/2009(H1N1)) s... 32.2 12
gb|GQ132145.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 32.2 12