niman wrote:
CDC has just released a handful of sequences at GISAID. Included is one sequence from India, A/India/8489/2009. It has D225G (collected Oct 20).
India has released a sequence, A/Pune/NIV8489/2009, which appears to be the above sequence without D225G.
The travel log for the earlier GISAID sequence, released by the CDC includes:
gb|GU292353.1| Influenza A virus (A/Pune/NIV6447/2009(H1N1)) ... 38.2 0.20
gb|GU292354.1| Influenza A virus (A/Pune/NIV8489/2009(H1N1)) ... 38.2 0.20
gb|GU292355.1| Influenza A virus (A/Pune/NIV9355/2009(H1N1)) ... 38.2 0.20
gb|CY051607.1| Influenza A virus (A/New York/4567/2009(H1N1))... 38.2 0.20
gb|CY041790.1| Influenza A virus (A/New York/3463/2009(H1N1))... 38.2 0.20
***************
gb|GU292353.1| Influenza A virus (A/Pune/NIV6447/2009(H1N1)) ... 34.2 3.1
gb|GU292354.1| Influenza A virus (A/Pune/NIV8489/2009(H1N1)) ... 34.2 3.1
gb|GU292355.1| Influenza A virus (A/Pune/NIV9355/2009(H1N1)) ... 34.2 3.1
gb|CY056164.1| Influenza A virus (A/Pensacola/INS40/2009(H1N1... 34.2 3.1
gb|GU595065.1| Influenza A virus (A/Sulaimani/05/2009(H1N1)) ... 34.2 3.1
gb|GQ329100.1| Influenza A virus (A/Paris/2650/2009(H1N1)) se... 34.2 3.1
gb|GQ229357.1| Influenza A virus (A/swine/Hong Kong/9656/2001... 34.2 3.1