Rhiza Labs FluTracker Forum

First H1N1 in swine in Mexico at Genbank.

LOCUS CY053645 1701 bp cRNA linear VRL 23-DEC-2009
DEFINITION Influenza A virus (A/swine/4/Mexico/2009(H1N1)) segment 4 sequence.
ACCESSION CY053645
VERSION CY053645.1 GI:281494420
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/swine/4/Mexico/2009(H1N1))
ORGANISM Influenza A virus (A/swine/4/Mexico/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Romero Sosa,I., Paz Ramirez,P., Barron Rodriguez,R.J. and Serrano
Gomez,S.S.
TITLE Sequences of influenza virus H1N1 isolate from a pig in Mexico
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1701)
AUTHORS Romero Sosa,I., Paz Ramirez,P., Barron Rodriguez,R.J. and Serrano
Gomez,S.S.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2009) Mexico-United States Commission for the
Prevention of the Foot and Mouth Disease and Other Exotic Diseases
of Animals (CPA), Road Mexico-Toluca 15.5 km, Colonia Palo Alto,
Delegacion Cuajimalpa, Mexico DF CP 05110, Mexico
FEATURES Location/Qualifiers
source 1..1701
/organism="Influenza A virus
(A/swine/4/Mexico/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/swine/4/Mexico/2009(H1N1)"
/serotype="H1N1"
/isolation_source="age:Adult; trachea"
/host="swine"
/db_xref="taxon:702451"
/segment="4"
/lab_host="MDCK passage(s)"
/country="Mexico: Queretaro"
/collection_date="Apr-2009"
gene 1..1701
/gene="HA"
CDS 1..1701
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ADA72003.1"
/db_xref="GI:281494421"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPPTSADQQSLYQNADTYVFV
GSSRYSKKFKPEIAIRPKVRXXEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI"
sig_peptide 1..51
/gene="HA"
mat_peptide 52..1032
/gene="HA"
/product="HA1"
mat_peptide 1033..1698
/gene="HA"
/product="HA2"
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggtgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccacct
601 actagtgctg accaacaaag tctctatcag aatgcagata catatgtttt tgtggggtca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gaggrrtcra
721 gaagggagga tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gactgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ttggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggtagatg gatggtacgg ttatcaccat caaaatgagc aggggtcagg atatgcagcc
1141 gacctgaaga gcacacagaa tgccattgac gagattacta acaaagtaaa ttctgttatt
1201 gaaaagatga atacacagtt cacagcagta ggtaaagagt tcaaccacct ggaaaaaaga
1261 atagagaatt taaataagaa agttgatgat ggtttcctgg acatttggac ttacaatgcc
1321 gaactgttgg ttctattgga aaatgaaaga actttggact accacgattc aaatgtgaag
1381 aacttatatg aaaaggtaag aagccagcta aaaaacaatg ccaaggaaat tggaaacggc
1441 tgctttgaat tttaccacaa atgcgataac acgtgcatgg aaagtgtcaa aaatgggact
1501 tatgactacc caaaatactc agaggaagca aaattaaaca gagaagaaat agatggggta
1561 aagctggaat caacaaggat ttaccagatt ttggcgatct attcaactgt cgccagttca
1621 ttagtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtctcta
1681 cagtgtagaa tatgtattta a

HA travel log

gb|CY047224.1| Influenza A virus (A/Catalonia/S1221/2009(H1N1... 32.2 12
gb|CY046979.1| Influenza A virus (A/Puerto Rico/8-1-MA/1934(H... 32.2 12
gb|CY045748.1| Influenza A virus (A/swine/USA/1976-MA/1931(H1... 32.2 12
gb|CY045740.1| Influenza A virus (A/swine/USA/1976/1931(H1N1)... 32.2 12
gb|CY045844.1| Influenza A virus (A/NWS-F(NWS/1934-Rockefelle... 32.2 12
gb|CY045764.1| Influenza A virus (A/Puerto Rico/8-1/1934(H1N1... 32.2 12
gb|CY045756.1| Influenza A virus (A/United Kingdom/1/1933(H1N... 32.2 12
gb|CY044365.1| Influenza A virus (A/New Jersey/11/1976(H1N1))... 32.2 12
gb|CY040488.1| Influenza A virus (A/swine/Minnesota/63607-35/... 32.2 12
gb|CY040170.1| Influenza A virus (A/Puerto Rico/8-SV14/1934(H... 32.2 12
gb|CY039991.1| Influenza A Virus (A/New Jersey/8/1976(H1N1)) ... 32.2 12
gb|CY038903.1| Influenza A virus (A/Puerto Rico/8-SV3/1934(H1... 32.2 12
gb|CY038895.1| Influenza A virus (A/Puerto Rico/8-SV1/1934(H1... 32.2 12
gb|CY034132.1| Influenza A virus (A/WSN/1933(H1N1)) segment 4... 32.2 12
gb|CY033577.1| Influenza A virus (A/Puerto Rico/8/1934(H1N1))... 32.2 12
gb|CY032929.1| Influenza A virus (A/swine/Tennessee/109/1977(... 32.2 12
dbj|AB434384.1| Influenza A virus (A/swine/Kyoto/3/1979(H1N1)... 32.2 12
gb|CY032213.1| Influenza A virus (A/swine/Wisconsin/1/1961(H1... 32.2 12
gb|CY030735.1| Influenza A virus (A/swine/Tennessee/9/1978(H1... 32.2 12
gb|CY028435.1| Influenza A virus (A/swine/Tennessee/7/1978(H1... 32.2 12
gb|CY028187.1| Influenza A virus (A/swine/Wisconsin/30747/197... 32.2 12
gb|CY028179.1| Influenza A virus (A/swine/Tennessee/3/1978(H1... 32.2 12
gb|CY027299.1| Influenza A virus (A/swine/Tennessee/118/1977(... 32.2 12
gb|CY027291.1| Influenza A virus (A/swine/Ohio/23/1935(H1N1))... 32.2 12
gb|CY026427.1| Influenza A virus (A/swine/Jamesburg/1942(H1N1... 32.2 12
gb|CY026491.1| Influenza A virus (A/swine/Tennessee/112/1977(... 32.2 12
gb|CY026483.1| Influenza A virus (A/swine/Tennessee/106/1977(... 32.2 12
gb|CY026475.1| Influenza A virus (A/swine/Tennessee/105/1977(... 32.2 12
gb|CY026467.1| Influenza A virus (A/swine/Iowa/100/1977(H1N1)... 32.2 12
gb|CY026459.1| Influenza A virus (A/swine/Tennessee/10/1976(H... 32.2 12
gb|CY026299.1| Influenza A virus (A/swine/Wisconsin/2/1966(H1... 32.2 12
gb|CY026291.1| Influenza A virus (A/swine/Wisconsin/1/1967(H1... 32.2 12
gb|CY026283.1| Influenza A virus (A/swine/Wisconsin/1/1957(H1... 32.2 12
gb|CY026139.1| Influenza A virus (A/Wisconsin/301/1976(H1N1))... 32.2 12
gb|EU139826.1| Influenza A virus (A/swine/Iowa/1973(H1N1)) he... 32.2 12

Mixtures at 225 and 226 is a major concern.

Swine can code for D225, D225N, D225G as well as D226Q. These are NOT spontaneous changes.

HA travel log

gb|GU236517.1| Influenza A virus (A/swine/Skane/1321/1983(H1N... 34.2 3.0
gb|GU052267.1| Influenza A virus (A/Swine/Indiana/1726/1988(H... 34.2 3.0
gb|GQ229293.1| Influenza A virus (A/swine/Hong Kong/NS1659/20... 34.2 3.0
gb|GQ229277.1| Influenza A virus (A/swine/Hong Kong/103/1993(... 34.2 3.0
gb|CY040604.1| Influenza A virus (A/swine/North Carolina/9675... 34.2 3.0
gb|CY040598.1| Influenza A virus (A/swine/North Carolina/3668... 34.2 3.0
gb|CY040597.1| Influenza A virus (A/swine/North Carolina/2969... 34.2 3.0
gb|CY040596.1| Influenza A virus (A/swine/North Carolina/2676... 34.2 3.0
gb|CY040590.1| Influenza A virus (A/swine/North Carolina/4162... 34.2 3.0
gb|CY040589.1| Influenza A virus (A/swine/North Carolina/3789... 34.2 3.0
gb|CY040588.1| Influenza A virus (A/swine/North Carolina/3527... 34.2 3.0
gb|CY040587.1| Influenza A virus (A/swine/North Carolina/2948... 34.2 3.0
gb|CY040553.1| Influenza A virus (A/swine/North Carolina/4620... 34.2 3.0
gb|CY039925.1| Influenza A Virus (A/swine/Indiana/1726/1988(H... 34.2 3.0
gb|CY039917.1| Influenza A Virus (A/swine/Wisconsin/1915/1988... 34.2 3.0
gb|CY039909.1| Influenza A Virus (A/Maryland/12/1991(H1N1)) s... 34.2 3.0
gb|CY036863.1| Influenza A virus (A/swine/Tennessee/107/1977(... 34.2 3.0
gb|CY036799.1| Influenza A virus (A/swine/Wisconsin/30954/197... 34.2 3.0
dbj|AB434416.1| Influenza A virus (A/swine/Saitama/1996(H1N2)... 34.2 3.0
dbj|AB434408.1| Influenza A virus (A/swine/Ehime/1/1980(H1N2)... 34.2 3.0
dbj|AB434400.1| Influenza A virus (A/swine/Niigata/1/1977(H1N... 34.2 3.0
dbj|AB434392.1| Influenza A virus (A/swine/Hokkaido/2/1981(H1... 34.2 3.0
dbj|AB434296.1| Influenza A virus (A/swine/Ratchaburi/NIAH550... 34.2 3.0
gb|FJ357104.1| Influenza A virus (A/turkey/NC/17026/1988(H1N1... 34.2 3.0
gb|CY035070.1| Influenza A virus (A/swine/Memphis/1/1990(H1N1... 34.2 3.0
gb|EU743159.1| Influenza A virus (A/turkey/IA/21089-3/1992(H1... 34.2 3.0
gb|CY032929.1| Influenza A virus (A/swine/Tennessee/109/1977(... 34.2 3.0
dbj|AB434384.1| Influenza A virus (A/swine/Kyoto/3/1979(H1N1)... 34.2 3.0
gb|EU735786.1| Influenza A virus (A/turkey/NC/19762/1988(H1N1... 34.2 3.0
gb|EU735794.1| Influenza A virus (A/chicken/PA/35154/1991(H1N... 34.2 3.0
gb|EU742636.1| Influenza A virus (A/turkey/KS/4880/1980(H1N1)... 34.2 3.0
gb|CY030735.1| Influenza A virus (A/swine/Tennessee/9/1978(H1... 34.2 3.0
gb|CY028780.1| Influenza A virus (A/swine/California/T9001707... 34.2 3.0
gb|CY028788.1| Influenza A virus (A/swine/Iowa/1/1986(H1N1)) ... 34.2 3.0
gb|CY028435.1| Influenza A virus (A/swine/Tennessee/7/1978(H1... 34.2 3.0
gb|CY028427.1| Influenza A virus (A/swine/Tennessee/4/1978(H1... 34.2 3.0
gb|CY028187.1| Influenza A virus (A/swine/Wisconsin/30747/197... 34.2 3.0
gb|CY028179.1| Influenza A virus (A/swine/Tennessee/3/1978(H1... 34.2 3.0
gb|CY028171.1| Influenza A virus (A/swine/Iowa/2/1987(H1N1)) ... 34.2 3.0
gb|CY027507.1| Influenza A virus (A/swine/Iowa/2/1985(H1N1)) ... 34.2 3.0
gb|CY027523.1| Influenza A virus (A/swine/Tennessee/8/1978(H1... 34.2 3.0
gb|CY027515.1| Influenza A virus (A/swine/Tennessee/5/1978(H1... 34.2 3.0
gb|EU186411.1| Influenza A virus (A/swine/Korea/GC0503/2005(H... 34.2 3.0
gb|CY027155.1| Influenza A virus (A/swine/Iowa/24297/1991(H1N... 34.2 3.0
gb|CY027307.1| Influenza A virus (A/swine/Tennessee/2/1978(H1... 34.2 3.0
gb|CY027299.1| Influenza A virus (A/swine/Tennessee/118/1977(... 34.2 3.0
gb|CY026491.1| Influenza A virus (A/swine/Tennessee/112/1977(... 34.2 3.0
gb|CY026483.1| Influenza A virus (A/swine/Tennessee/106/1977(... 34.2 3.0
gb|CY026475.1| Influenza A virus (A/swine/Tennessee/105/1977(... 34.2 3.0
gb|CY026467.1| Influenza A virus (A/swine/Iowa/100/1977(H1N1)... 34.2 3.0
gb|CY026459.1| Influenza A virus (A/swine/Tennessee/10/1976(H... 34.2 3.0
gb|CY026451.1| Influenza A virus (A/swine/Ontario/6/1981(H1N1... 34.2 3.0
gb|CY026443.1| Influenza A virus (A/swine/Ontario/3/1981(H1N1... 34.2 3.0
gb|CY026435.1| Influenza A virus (A/swine/Ontario/2/1981(H1N1... 34.2 3.0
gb|CY026419.1| Influenza A virus (A/swine/Tennessee/23/1976(H... 34.2 3.0
gb|EU139829.1| Influenza A virus (A/swine/North Carolina/3688... 34.2 3.0
gb|CY025205.1| Influenza A virus (A/swine/Tennessee/37/1977(H... 34.2 3.0
gb|CY025010.1| Influenza A virus (A/swine/Kansas/3024/1987(H1... 34.2 3.0
gb|CY024941.1| Influenza A virus (A/swine/Tennessee/48/1977(H... 34.2 3.0
gb|CY024925.1| Influenza A virus (A/Ohio/3559/1988(H1N1)) seg... 34.2 3.0
gb|CY025002.1| Influenza A virus (A/swine/Arizona/148/1977(H1... 34.2 3.0
gb|CY024994.1| Influenza A virus (A/swine/Wisconsin/663/1980(... 34.2 3.0
gb|CY024986.1| Influenza A virus (A/swine/Tennessee/10/1978(H... 34.2 3.0
gb|CY024978.1| Influenza A virus (A/swine/Tennessee/88/1977(H... 34.2 3.0
gb|CY024970.1| Influenza A virus (A/swine/Tennessee/87/1977(H... 34.2 3.0
gb|CY024954.1| Influenza A virus (A/swine/Tennessee/84/1977(H... 34.2 3.0
gb|CY024950.1| Influenza A virus (A/swine/Tennessee/96/1977(H... 34.2 3.0
gb|CY024942.1| Influenza A virus (A/swine/Tennessee/61/1977(H... 34.2 3.0
gb|CY024933.1| Influenza A virus (A/swine/Minnesota/24/1975(H... 34.2 3.0
gb|CY022970.1| Influenza A virus (A/swine/Iowa/31483/1988(H1N... 34.2 3.0
gb|CY022962.1| Influenza A virus (A/swine/Iowa/1/1987(H1N1)) ... 34.2 3.0
gb|CY022994.1| Influenza A virus (A/swine/Wisconsin/629/1980(... 34.2 3.0
gb|CY022978.1| Influenza A virus (A/swine/Ontario/1/1981(H1N1... 34.2 3.0
gb|EF679201.1| Influenza A virus (A/turkey/Kansas/4880/1980 (... 34.2 3.0
gb|CY022325.1| Influenza A virus (A/swine/Iowa/3/1985(H1N1)) ... 34.2 3.0
gb|CY022333.1| Influenza A virus (A/swine/Iowa/17672/1988(H1N... 34.2 3.0
gb|CY022429.1| Influenza A virus (A/swine/Wisconsin/1915/1988... 34.2 3.0
gb|CY022469.1| Influenza A virus (A/swine/Kansas/3228/1987(H1... 34.2 3.0
gb|CY022477.1| Influenza A virus (A/swine/Maryland/23239/1991... 34.2 3.0
gb|CY022453.1| Influenza A virus (A/swine/Wisconsin/661/1980(... 34.2 3.0
gb|CY022445.1| Influenza A virus (A/swine/Wisconsin/641/1980(... 34.2 3.0
gb|CY022421.1| Influenza A virus (A/swine/Wisconsin/11/1980(H... 34.2 3.0
gb|CY022405.1| Influenza A virus (A/swine/Tennessee/11/1978(H... 34.2 3.0
gb|CY022389.1| Influenza A virus (A/swine/Ontario/7/1981(H1N1... 34.2 3.0
gb|CY022381.1| Influenza A virus (A/swine/Ontario/4/1981(H1N1... 34.2 3.0
gb|CY022373.1| Influenza A virus (A/swine/Nebraska/123/1977(H... 34.2 3.0
gb|CY022365.1| Influenza A virus (A/swine/Minnesota/5892-7/19... 34.2 3.0
gb|CY022357.1| Influenza A virus (A/swine/Minnesota/27/1976(H... 34.2 3.0
gb|CY022349.1| Influenza A virus (A/swine/Kentucky/1/1976(H1N... 34.2 3.0
gb|CY022301.1| Influenza A virus (A/swine/Tennessee/82/1977(H... 34.2 3.0
gb|CY022293.1| Influenza A virus (A/swine/Tennessee/79/1977(H... 34.2 3.0
gb|CY022285.1| Influenza A virus (A/swine/Tennessee/65/1977(H... 34.2 3.0
gb|CY022277.1| Influenza A virus (A/swine/Tennessee/62/1977(H... 34.2 3.0
gb|CY022269.1| Influenza A virus (A/swine/Tennessee/10/1977(H... 34.2 3.0
gb|CY022141.1| Influenza A virus (A/swine/Tennessee/64/1977(H... 34.2 3.0
**************************

gb|CY052266.1| Influenza A virus (A/Texas/42102708/2009(H1N1)... 36.2 0.76
gb|CY052903.1| Influenza A virus (A/Texas/45032708/2009(H1N1)... 36.2 0.76
dbj|AB536768.1| Influenza A virus (A/Nagasaki/HA-57/2009(H1N1... 36.2 0.76
dbj|AB535748.1| Influenza A virus (A/Nagasaki/HA-63/2009(H1N1... 36.2 0.76
dbj|AB535746.1| Influenza A virus (A/Nagasaki/HA-59/2009(H1N1... 36.2 0.76
gb|CY050019.1| Influenza A virus (A/Mexico City/WR1306N/2009(... 36.2 0.76
gb|CY045226.1| Influenza A virus (A/Taiwan/115/2009(H1N1)) se... 36.2 0.76
gb|GQ365436.1| Influenza A virus (A/Kagoshima/1/2009(H1N1)) s... 36.2 0.76
gb|GQ338402.1| Influenza A virus (A/Pennsylvania/09/2009(H1N1... 36.2 0.76
gb|GQ334338.1| Influenza A virus (A/Fukuoka-C/3/2009(H1N1)) s... 36.2 0.76
gb|GQ334330.1| Influenza A virus (A/Fukuoka-C/2/2009(H1N1)) s... 36.2 0.76
gb|GQ287619.1| Influenza A virus (A/Fukuoka-C/1/2009(H1N1)) s... 36.2 0.76
gb|GQ280797.1| Influenza A virus (A/California/04/2009(H1N1))... 36.2 0.76
gb|GQ232099.1| Influenza A virus (A/Milan/UHSR1/2009(H1N1)) s... 36.2 0.76
gb|GQ117044.1| Influenza A virus (A/California/04/2009(H1N1))... 36.2 0.76
gb|FJ966971.1| Influenza A virus (A/California/09/2009(H1N1))... 36.2 0.76
gb|FJ966082.1| Influenza A virus (A/California/04/2009(H1N1))... 36.2 0.76
****************************

gb|GQ323560.1| Influenza A virus (A/Florida/09/2009(H1N1)) se... 36.2 0.76
gb|EU743175.1| Influenza A virus (A/chicken/NY/21665-73/1998(... 36.2 0.76
****************************
gb|FJ868025.1| Influenza A virus (A/chicken/Sukhothai/NIAH114... 36.2 0.76
gb|GQ227391.1| Influenza A virus (A/pika/Qinghai/QW/2007(H5N1... 36.2 0.76
gb|GQ227383.1| Influenza A virus (A/pika/Qinghai/SHK/2007(H5N... 36.2 0.76
gb|GQ227380.1| Influenza A virus (A/pika/Qinghai/GRL/2007(H5N... 36.2 0.76
gb|GQ227367.1| Influenza A virus (A/pika/Qinghai/HMH/2007(H5N... 36.2 0.76
gb|CY043358.1| Influenza A virus (A/chicken/Bangladesh/FDIL(G... 36.2 0.76
gb|FJ986619.1| Influenza A virus (A/Wisconsin/87/2005(H1N1)) ... 36.2 0.76
gb|FJ455874.1| Influenza A virus (A/chicken/Sukhothai/NIAH114... 36.2 0.76
gb|CY036141.1| Influenza A virus (A/chestnut munia/Hong Kong/... 36.2 0.76
gb|CY036133.1| Influenza A virus (A/scaly-breasted munia/Hong... 36.2 0.76
gb|DQ992831.1| Influenza A virus (A/chicken/Fujian/584/2006(H... 36.2 0.76
gb|DQ992830.1| Influenza A virus (A/chicken/Fujian/12239/2005... 36.2 0.76
gb|DQ992828.1| Influenza A virus (A/chicken/Fujian/11933/2005... 36.2 0.76
gb|AY585375.1| Influenza A virus (A/duck/Guangxi/50/2001(H5N1... 36.2 0.76
******************

gb|CY042320.1| Influenza A virus (A/swine/Illinois/Sg-00445/2... 38.2 0.19
gb|CY042316.1| Influenza A virus (A/swine/Illinois/Sg-00444/2... 38.2 0.19
gb|CY042312.1| Influenza A virus (A/swine/Illinois/Sg-00443/2... 38.2 0.19
gb|GQ229309.1| Influenza A virus (A/swine/Hong Kong/78/2003(H... 38.2 0.19
*********************

gb|CY052407.1| Influenza A virus (A/Texas/43132503/2009(H1N1)... 34.2 3.0
gb|CY050190.1| Influenza A virus (A/New York/4576/2009(H1N1))... 34.2 3.0
gb|GQ915021.1| Influenza A virus (A/Sao Paulo/53845/2009(H1N1... 34.2 3.0
gb|GQ915020.1| Influenza A virus (A/Sao Paulo/53838/2009(H1N1... 34.2 3.0
gb|CY045061.1| Influenza A virus (A/New York/4099/2009(H1N1))... 34.2 3.0
*************************

gb|GU290190.1| Influenza A virus (A/Utah/42/2009(H1N1)) segme... 36.2 0.76
gb|CY052019.1| Influenza A virus (A/Norway/3206-3/2009(H1N1))... 36.2 0.76
gb|GU211219.1| Influenza A virus (A/Vladivostok/01/2009(H1N1)... 36.2 0.76
gb|GU189649.1| Influenza A virus (A/Zhejiang/DTID-ZJU03/2009(... 36.2 0.76
gb|GU112090.1| Influenza A virus (A/Zhejiang/DTID-ZJU02/2009(... 36.2 0.76
gb|GU108486.1| Influenza A virus (A/Zhejiang-Yiwu/11/2009(H1N... 36.2 0.76
gb|CY047083.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 36.2 0.76
gb|CY047080.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 36.2 0.76
gb|CY047074.1| Influenza A virus (A/Catalonia/NS1706/2009(H1N... 36.2 0.76
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 36.2 0.76
gb|GQ915017.1| Influenza A virus (A/Sao Paulo/53206/2009(H1N1... 36.2 0.76
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 36.2 0.76
gb|GQ379822.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 36.2 0.76
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 36.2 0.76
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 36.2 0.76
gb|GQ229348.1| Influenza A virus (A/swine/Hong Kong/NS857/200... 36.2 0.76
gb|GQ229261.1| Influenza A virus (A/swine/Hong Kong/NS837/200... 36.2 0.76
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 36.2 0.76
gb|GQ200237.1| Influenza A virus (A/Georgia/01/2009(H1N1)) se... 36.2 0.76
gb|GQ162194.1| Influenza A virus (A/Mexico/3955/2009(H1N1)) s... 36.2 0.76
gb|GQ160568.1| Influenza A virus (A/New York/04/2009(H1N1)) s... 36.2 0.76
gb|GQ132145.1| Influenza A virus (A/Mexico/InDRE4114/2009(H1N... 36.2 0.76
***************************

gb|GQ915076.1| Influenza A virus (A/Singapore/TLL10/2009(H1N1... 30.2 47
gb|GQ906804.1| Influenza A virus (A/reassortant/NYMC X-181A(C... 30.2 47
gb|GQ906801.1| Influenza A virus (A/reassortant/NYMC X-181(Ca... 30.2 47
gb|GQ527165.1| Influenza A virus (A/Singapore/TLL51/2009(H1N1... 30.2 47
gb|GQ527167.1| Influenza A virus (A/Omsk/01/2009(H1N1)) segme... 30.2 47
gb|GQ505853.1| Influenza A virus (A/Irkutsk/02/2009(H1N1)) se... 30.2 47
gb|GQ496602.1| Influenza A virus (A/Lishui/01/2009(H1N1)) seg... 30.2 47
gb|GQ485656.1| Influenza A virus (A/Ekaterinburg/01/2009(H1N1... 30.2 47
gb|GQ374895.1| Influenza A virus (A/reassortant/IDCDC-RG20(Te... 30.2 47
gb|GQ359758.1| Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(... 30.2 47
gb|GQ303340.1| Influenza A virus (A/Mexico/InDRE4487/2009(H1N... 30.2 47
gb|GQ247722.1| Influenza A virus (A/resassortant/IVR-153(A/Ca... 30.2 47
gb|GQ232019.1| Influenza A virus (A/Texas/17/2009(H1N1)) segm... 30.2 47
gb|GQ219781.1| Influenza A virus (A/reassortant/IDCDC-RG15(Te... 30.2 47
gb|GQ214335.1| Influenza A virus (A/reassortant/NYMC X-179A(C... 30.2 47
gb|GQ183633.1| Influenza A virus (A/Finland/553/2009(H1N1)) s... 30.2 47
gb|GQ149641.1| Influenza A virus (A/Mexico/4603/2009(H1N1)) s... 30.2 47

D225G

(A/Catalonia/NS092145684/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Catalonia/NS092145684/2009(H1N1)"
/serotype="H1N1"
/isolation_source="gender:M; age:62; bronchoalveolar
lavage"
/host="human"
/db_xref="taxon:702513"
/segment="4"
/country="Spain: Catalonia"
/collection_date="10-Dec-2009"
/note="lineage: swl"

D225G mixture

(A/Mexico/InDRE36529/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Mexico/InDRE36529/2009(H1N1)"
/serotype="H1N1"
/isolation_source="gender:F; age:20; Pharyngeal swab"
/host="human"
/db_xref="taxon:702358"
/segment="4"
/country="Mexico: Oaxaca"
/collection_date="08-Aug-2009"
/note="Sample collected from a deceased person."

The following info in this thread shows Catalonia, Spain as the location.

Niman:

Correct. Sequences released today show D225G and D225N in swine in Mexico, bronchoalveolar lavage samples from patient in Spain (collected Dec 10), and five fatal cases in Mexico (including at least one in December).

These are all under "dropping shoes" catagory.