Rhiza Labs FluTracker Forum

NP from Spain

gb|CY053354.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 44.1 0.005
gb|CY053349.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 44.1 0.005
gb|CY053343.1| Influenza A virus (A/Beijing/719/2009(H1N1)) s... 44.1 0.005
gb|CY053339.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 44.1 0.005
gb|CY053333.1| Influenza A virus (A/Beijing/717/2009(H1N1)) s... 44.1 0.005
gb|CY045560.1| Influenza A virus (A/swine/Kansas/015252/2009(... 44.1 0.005
gb|CY045552.1| Influenza A virus (A/swine/Oklahoma/001142/200... 44.1 0.005
gb|GQ396546.1| Influenza A virus (A/CastillaLaMancha/GP248/20... 44.1 0.005
gb|GQ396541.1| Influenza A virus (A/Madrid/GP193/2009(H1N1)) ... 44.1 0.005
gb|GQ396517.1| Influenza A virus (A/Murcia/GP78/2009(H1N1)) s... 44.1 0.005
gb|CY041904.1| Influenza A virus (A/swine/Minnesota/SG-00239/... 44.1 0.005
gb|GQ232053.1| Influenza A virus (A/South Dakota/05/2009(H1N1... 44.1 0.005
gb|FJ638299.1| Influenza A virus (A/swine/IL/00685/2005(H1N1)... 44.1 0.005
gb|FJ638307.1| Influenza A virus (A/swine/NC/00573/2005(H1N1)... 44.1 0.005
gb|FJ985766.1| Influenza A virus (A/Castilla-La Mancha/GP9/20... 44.1 0.005
gb|EU697205.1| Influenza A virus (A/turkey/Minnesota/366767/2... 44.1 0.005
gb|EU743213.1| Influenza A virus (A/turkey/MN/366767/2005(H3N... 44.1 0.005

NP from China

gb|CY053354.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 40.1 0.049
gb|CY053349.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 40.1 0.049
gb|CY053343.1| Influenza A virus (A/Beijing/719/2009(H1N1)) s... 40.1 0.049
gb|CY053339.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 40.1 0.049
gb|CY053333.1| Influenza A virus (A/Beijing/717/2009(H1N1)) s... 40.1 0.049
gb|GU198202.1| Influenza A virus (A/Nanjing/3/2009(H1N1)) seg... 40.1 0.049
gb|CY039912.1| Influenza A Virus (A/Maryland/12/1991(H1N1)) s... 40.1 0.049
gb|AF455706.1| Influenza A virus (A/Swine/Illinois/100084/01 ... 40.1 0.049
gb|AF455705.1| Influenza A virus (A/Swine/Illinois/100085A/01... 40.1 0.049
gb|L24394.1|FLANPMD129 Influenza A virus (A/MD/12/1991(H1N1))... 40.1 0.049
gb|GQ229342.1| Influenza A virus (A/swine/Hong Kong/294/2009(... 38.2 0.19
gb|CY028438.1| Influenza A virus (A/swine/Tennessee/7/1978(H1... 38.2 0.19

NP from H5N1/H9N2 (partial list)

gb|CY053354.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 36.2 0.76
gb|CY053349.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 36.2 0.76
gb|CY053343.1| Influenza A virus (A/Beijing/719/2009(H1N1)) s... 36.2 0.76
gb|CY053339.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 36.2 0.76
gb|CY053333.1| Influenza A virus (A/Beijing/717/2009(H1N1)) s... 36.2 0.76
gb|CY046113.1| Influenza A virus (A/chicken/India/WB-NIV529/2... 36.2 0.76
gb|CY046103.1| Influenza A virus (A/duck/India/TR-NIV4396/200... 36.2 0.76
gb|CY046071.1| Influenza A virus (A/chicken/India/WB-NIV2653/... 36.2 0.76
gb|EU008595.1| Influenza A virus (A/chicken/Anhui/T6/2006(H5N... 36.2 0.76
gb|EU008587.1| Influenza A virus (A/chicken/Anhui/T5/2006(H5N... 36.2 0.76
gb|EU008579.1| Influenza A virus (A/Anhui/T2/2006(H5N1)) nucl... 36.2 0.76
gb|FJ534589.1| Influenza A virus (A/duck/Viet Nam/41ST/2008(H... 36.2 0.76
gb|FJ534588.1| Influenza A virus (A/duck/Viet Nam/38ST/2008(H... 36.2 0.76
gb|FJ534587.1| Influenza A virus (A/duck/Viet Nam/36ST/2008(H... 36.2 0.76
gb|FJ534586.1| Influenza A virus (A/duck/Viet Nam/2B-TV/2008(... 36.2 0.76
gb|FJ534585.1| Influenza A virus (A/duck/Viet Nam/17A-TV/2008... 36.2 0.76
gb|FJ534584.1| Influenza A virus (A/duck/Viet Nam/15A-TV/2008... 36.2 0.76
gb|FJ534583.1| Influenza A virus (A/duck/Viet Nam/12A-LA/2008... 36.2 0.76
gb|FJ534582.1| Influenza A virus (A/duck/Viet Nam/DT-9/2007(H... 36.2 0.76
gb|FJ534580.1| Influenza A virus (A/duck/Viet Nam/BL-3/2006(H... 36.2 0.76
gb|FJ534579.1| Influenza A virus (A/duck/Viet Nam/CM-1/2006(H... 36.2 0.76
gb|GU052536.1| Influenza A virus (A/duck/Phu Tho/07-92/2007(H... 36.2 0.76
gb|GU052529.1| Influenza A virus (A/duck/Bac Lieu/07-09/2007(... 36.2 0.76
gb|GU052521.1| Influenza A virus (A/chicken/Scotland/1959(H5N... 36.2 0.76
gb|GU052505.1| Influenza A virus (A/duck/Hai Phong /208/2006(... 36.2 0.76
gb|GU052497.1| Influenza A virus (A/egret/Hong Kong/757.2/200... 36.2 0.76
gb|GU052489.1| Influenza A virus (A/chicken/Hong Kong/D-06-09... 36.2 0.76
gb|GU052452.1| Influenza A virus (A/magpie/Korea/Y:S-M1/2004(... 36.2 0.76
gb|GU052444.1| Influenza A virus (A/duck/Viet Nam/NCVDCDC14/2... 36.2 0.76
gb|GU052436.1| Influenza A virus (A/pigeon/Thailand/1B/2004(H... 36.2 0.76
gb|GU052429.1| Influenza A virus (A/chicken/Legok/2003(H5N1))... 36.2 0.76
gb|GU052421.1| Influenza A virus (A/environment/Viet Nam/1203... 36.2 0.76
gb|GU052414.1| Influenza A virus (A/chicken/Indonesia/11/2003... 36.2 0.76
gb|GU052399.1| Influenza A virus (A/duck/Son La/07-33/2007(H5... 36.2 0.76
gb|GU052173.1| Influenza A virus (A/duck/Ninh Binh /203/2006(... 36.2 0.76
gb|GU052167.1| Influenza A virus (A/duck/Nam Dinh/218/2006(H5... 36.2 0.76
gb|GU052161.1| Influenza A virus (A/chicken/Indonesia/9/2003(... 36.2 0.76
gb|GU052153.1| Influenza A virus (A/chicken/Indonesia/8/2003(... 36.2 0.76
gb|GU051073.1| Influenza A virus (A/semipalmated sandpiper/De... 36.2 0.76
gb|GU051020.1| Influenza A virus (A/ruddy turnstone/New Jerse... 36.2 0.76
gb|GU051012.1| Influenza A virus (A/ruddy turnstone/New Jerse... 36.2 0.76
gb|GU051004.1| Influenza A virus (A/ruddy turnstone/New Jerse... 36.2 0.76
gb|GU186643.1| Influenza A virus (A/unknown/Prachinburi (Thai... 36.2 0.76
gb|GU186651.1| Influenza A virus (A/duck/Ang Thong/71(2)/2004... 36.2 0.76
gb|GU186659.1| Influenza A virus (A/duck/Viet Nam/NCVDCDC9/20... 36.2 0.76
gb|GU186667.1| Influenza A virus (A/environment/Viet Nam/NCVD... 36.2 0.76
gb|GU186675.1| Influenza A virus (A/chicken/Hong Kong/409.1/2... 36.2 0.76
gb|GU186683.1| Influenza A virus (A/environment/Hong Kong/674... 36.2 0.76
gb|GU186703.1| Influenza A virus (A/whooper swan/Mongolia/244... 36.2 0.76
gb|GU186711.1| Influenza A virus (A/chicken/Yamaguchi/7/2004(... 36.2 0.76
gb|GU186719.1| Influenza A virus (A/chicken/Lang Son/200/2005... 36.2 0.76
gb|GU186727.1| Influenza A virus (A/duck/Lang Son/201/2005(H5... 36.2 0.76
gb|GU186735.1| Influenza A virus (A/chicken/Ninh Binh/209/200... 36.2 0.76
gb|GU186740.1| Influenza A virus (A/chicken/Indonesia/7/2003(... 36.2 0.76
gb|GU186748.1| Influenza A virus (A/Muscovy duck/Ca Mau/07-04... 36.2 0.76
gb|GU186756.1| Influenza A virus (A/duck/Bac Lieu/07-06/2007(... 36.2 0.76
gb|GU186764.1| Influenza A virus (A/chicken/Bac Lieu/07-10/20... 36.2 0.76
gb|GU186772.1| Influenza A virus (A/duck/Hau Giang/07-12/2007... 36.2 0.76
gb|GQ917236.1| Influenza A virus (A/chicken/India/WB-NIV92456... 36.2 0.76
gb|GU182143.1| Influenza A virus (A/chicken/Hunan/3/2007(H5N1... 36.2 0.76
gb|GU182151.1| Influenza A virus (A/duck/Hunan/3/2007(H5N1)) ... 36.2 0.76
gb|GU182159.1| Influenza A virus (A/chicken/Hunan/8/2008(H5N1... 36.2 0.76
gb|GU182167.1| Influenza A virus (A/duck/Hunan/8/2008(H5N1)) ... 36.2 0.76
gb|GU182175.1| Influenza A virus (A/environment/Hunan/7-73/20... 36.2 0.76
gb|GU182191.1| Influenza A virus (A/environment/Hunan/6-45/20... 36.2 0.76
gb|GU182199.1| Influenza A virus (A/environment/Hunan/5-25/20... 36.2 0.76
gb|GU182207.1| Influenza A virus (A/environment/Hunan/5-32/20... 36.2 0.76
gb|GU182215.1| Influenza A virus (A/environment/Hunan/1-8/200... 36.2 0.76
gb|GU182223.1| Influenza A virus (A/environment/Hunan/1-35/20... 36.2 0.76
gb|GU182231.1| Influenza A virus (A/environment/Hunan/1-12/20... 36.2 0.76
gb|GU182239.1| Influenza A virus (A/environment/Hunan/2-16/20... 36.2 0.76
gb|GU182247.1| Influenza A virus (A/environment/Hunan/2-1/200... 36.2 0.76
gb|CY049805.1| Influenza A virus (A/gadwall/Altai/1326/2007(H... 36.2 0.76
gb|CY049789.1| Influenza A virus (A/gadwall/Altai/1324/2007(H... 36.2 0.76
gb|FJ410141.1| Influenza A virus (A/swine/Minnesota/1145/2007... 36.2 0.76
gb|EU195417.1| Influenza A virus (A/mallard/Huadong/Y/2003(H5... 36.2 0.76
gb|EU195393.1| Influenza A virus (A/mallard/Huadong/S/2005(H5... 36.2 0.76
gb|FJ445229.2| Influenza A virus (A/mute swan/Hungary/3472/20... 36.2 0.76
gb|CY047484.1| Influenza A virus (A/chicken/Reshoty/02/2006(H... 36.2 0.76
gb|CY047476.1| Influenza A virus (A/duck/Omsk/1822/2006(H5N1)... 36.2 0.76
gb|CY047469.1| Influenza A virus (A/chicken/Domodedovo/MK/200... 36.2 0.76
gb|CY047462.1| Influenza A virus (A/chicken/Thailand/CU-355/2... 36.2 0.76
gb|CY047458.1| Influenza A virus (A/chicken/Thailand/CU-354/2... 36.2 0.76
dbj|AB525192.1| Influenza A virus (A/mountain hawk-eagle/Kuma... 36.2 0.76
gb|GU003869.1| Influenza A virus (A/chicken/Indonesia/3/2007(... 36.2 0.76
gb|FJ868015.1| Influenza A virus (A/chicken/Thailand/ST-351/2... 36.2 0.76
gb|FJ868026.1| Influenza A virus (A/chicken/Sukhothai/NIAH114... 36.2 0.76
gb|FJ868034.1| Influenza A virus (A/chicken/Uthaithani/NIAH11... 36.2 0.76
dbj|AB523776.1| Influenza A virus (A/common goldeneye/Mongoli... 36.2 0.76
dbj|AB523768.1| Influenza A virus (A/bar-headed goose/Mongoli... 36.2 0.76
dbj|AB523760.1| Influenza A virus (A/rubby shelduck/Mongolia/... 36.2 0.76
dbj|AB520709.1| Influenza A virus (A/whooper swan/Mongolia/6/... 36.2 0.76
gb|CY045751.1| Influenza A virus (A/swine/USA/1976-MA/1931(H1... 36.2 0.76
gb|CY045743.1| Influenza A virus (A/swine/USA/1976/1931(H1N1)... 36.2 0.76
gb|CY045712.1| Influenza A virus (A/swine/Oklahoma/042169/200... 36.2 0.76
gb|CY045704.1| Influenza A virus (A/swine/Oklahoma/020736-1/2... 36.2 0.76
gb|CY045696.1| Influenza A virus (A/swine/Oklahoma/020736-2/2... 36.2 0.76
gb|CY045688.1| Influenza A virus (A/swine/Oklahoma/020734-3/2... 36.2 0.76
gb|CY045680.1| Influenza A virus (A/swine/Oklahoma/020734-2/2... 36.2 0.76
gb|CY045672.1| Influenza A virus (A/swine/Oklahoma/016179-9/2... 36.2 0.76
gb|CY045664.1| Influenza A virus (A/swine/Oklahoma/016179-8/2... 36.2 0.76
gb|CY045656.1| Influenza A virus (A/swine/Oklahoma/011521-4/2... 36.2 0.76
gb|CY045648.1| Influenza A virus (A/swine/Oklahoma/011521-5/2... 36.2 0.76
gb|CY045640.1| Influenza A virus (A/swine/Oklahoma/011289-8/2... 36.2 0.76
gb|CY045632.1| Influenza A virus (A/swine/Oklahoma/011289-10/... 36.2 0.76
gb|CY045624.1| Influenza A virus (A/swine/Oklahoma/011289-9/2... 36.2 0.76
gb|CY045616.1| Influenza A virus (A/swine/Oklahoma/010710-8/2... 36.2 0.76
gb|CY045608.1| Influenza A virus (A/swine/Oklahoma/010710-9/2... 36.2 0.76
gb|CY045600.1| Influenza A virus (A/swine/Oklahoma/010226-17/... 36.2 0.76
gb|CY045592.1| Influenza A virus (A/swine/Oklahoma/010226-16/... 36.2 0.76
gb|CY045568.1| Influenza A virus (A/swine/Oklahoma/008722/200... 36.2 0.76
gb|CY045560.1| Influenza A virus (A/swine/Kansas/015252/2009(... 36.2 0.76
gb|CY045552.1| Influenza A virus (A/swine/Oklahoma/001142/200... 36.2 0.76
gb|CY045544.1| Influenza A virus (A/swine/Oklahoma/053259/200... 36.2 0.76
gb|CY045536.1| Influenza A virus (A/swine/Texas/050625/2008(H... 36.2 0.76
gb|CY045528.1| Influenza A virus (A/swine/Texas/050593/2008(H... 36.2 0.76
gb|CY045520.1| Influenza A virus (A/swine/Oklahoma/032726/200... 36.2 0.76
gb|FJ573469.1| Influenza A virus (A/Bangladesh/207095/2008(H5... 36.2 0.76
gb|GQ466183.1| Influenza A virus (A/Thailand/NBL1/2006(H5N1))... 36.2 0.76
gb|FJ793301.1| Influenza A virus (A/duck/Zhejiang/3/2002(H9N2... 36.2 0.76
gb|FJ793325.1| Influenza A virus (A/chicken/Henan/1/2002(H9N2... 36.2 0.76
gb|FJ793333.1| Influenza A virus (A/chicken/Henan/1/2003(H9N2... 36.2 0.76
gb|FJ793341.1| Influenza A virus (A/chicken/Henan/1/2004(H9N2... 36.2 0.76
gb|FJ793349.1| Influenza A virus (A/chicken/Henan/1/2005(H9N2... 36.2 0.76
gb|FJ793357.1| Influenza A virus (A/chicken/Henan/2/2004(H9N2... 36.2 0.76
gb|GQ227362.1| Influenza A virus (A/pika/Qinghai/BI/2007(H5N1... 36.2 0.76
gb|CY044221.1| Influenza A virus (A/Taiwan/T1773/2009(H1N1)) ... 36.2 0.76
gb|CY044043.1| Influenza A virus (A/duck/Egypt/0871/2008(H5N1... 36.2 0.76
gb|CY044035.1| Influenza A virus (A/chicken/Egypt/083/2008(H5... 36.2 0.76
gb|GQ386152.1| Influenza A virus (A/bean goose/Tyva/10/2009(H... 36.2 0.76
gb|GQ386144.1| Influenza A virus (A/grebe/Tyva/3/2009(H5N1)) ... 36.2 0.76
gb|GQ335515.1| Influenza A virus (A/chicken/Shanghai/Y2/2008(... 36.2 0.76
gb|GQ335507.1| Influenza A virus (A/chicken/Shanghai/Y2/2007(... 36.2 0.76
gb|GQ335499.1| Influenza A virus (A/chicken/Shanghai/Y2/2006(... 36.2 0.76
gb|GQ335491.1| Influenza A virus (A/chicken/Shanghai/Y1/2008(... 36.2 0.76
gb|GQ335482.1| Influenza A virus (A/chicken/Shanghai/Y1/2007(... 36.2 0.76
gb|GQ335473.1| Influenza A virus (A/chicken/Shanghai/Y1/2006(... 36.2 0.76
gb|GQ337905.1| Influenza A virus (A/chicken/Iran/53-3/2008(H5... 36.2 0.76
gb|GQ232443.1| Influenza A virus (A/Vietnam/HN1/2007(H5N1)) s... 36.2 0.76
gb|CY041904.1| Influenza A virus (A/swine/Minnesota/SG-00239/... 36.2 0.76
gb|FJ445237.1| Influenza A virus (A/mute swan/Hungary/4571/20... 36.2 0.76
gb|FJ445245.1| Influenza A virus (A/goose/Hungary/14756/2006(... 36.2 0.76
gb|EU826545.2| Influenza A virus (A/swine/Quebec/4001/2005(H3... 36.2 0.76
gb|CY041357.1| Influenza A virus (A/mallard/Sweden/65/2005(H4... 36.2 0.76
gb|CY041293.1| Influenza A virus (A/chicken/Egypt/0836/2008(H... 36.2 0.76
gb|GQ122556.1| Influenza A virus (A/chicken/East Java/UT6020/... 36.2 0.76
gb|GQ122421.1| Influenza A virus (A/chicken/East Java/UT6031/... 36.2 0.76
gb|GQ122420.1| Influenza A virus (A/chicken/South Kalimantan/... 36.2 0.76
gb|GQ122418.1| Influenza A virus (A/chicken/East Java/UT6021/... 36.2 0.76
gb|GQ122417.1| Influenza A virus (A/chicken/East Java/UT6019/... 36.2 0.76
gb|GQ122416.1| Influenza A virus (A/chicken/East Java/UT6016/... 36.2 0.76
gb|GQ122415.1| Influenza A virus (A/chicken/Central Java/UT30... 36.2 0.76
gb|GQ122414.1| Influenza A virus (A/chicken/Sulawesi Selatan/... 36.2 0.76
gb|GQ122413.1| Influenza A virus (A/chicken/Sulawesi Selatan/... 36.2 0.76
gb|GQ122412.1| Influenza A virus (A/chicken/Bali/UT2092/2005(... 36.2 0.76
gb|GQ122411.1| Influenza A virus (A/chicken/Bali/UT2091/2005(... 36.2 0.76
gb|GQ122410.1| Influenza A virus (A/duck/East Java/UT1107/200... 36.2 0.76
gb|GQ122409.1| Influenza A virus (A/quail/Yogjakarta/UT1075/2... 36.2 0.76
gb|GQ122408.1| Influenza A virus (A/duck/East Java/UT1046/200... 36.2 0.76
gb|GQ122407.1| Influenza A virus (A/chicken/East Kalimantan/U... 36.2 0.76
gb|GQ122406.1| Influenza A virus (A/quail/Yogjakarta/UT1023/2... 36.2 0.76
gb|GQ122405.1| Influenza A virus (A/chicken/East Java/UT1006/... 36.2 0.76
gb|GQ122404.1| Influenza A virus (A/chicken/West Java/UT1001/... 36.2 0.76
gb|CY041039.1| Influenza A virus (A/duck/Laos/25/2006(H5N1)) ... 36.2 0.76
gb|CY040999.1| Influenza A virus (A/chicken/Laos/16/2008(H5N1... 36.2 0.76
gb|CY040983.1| Influenza A virus (A/duck/Laos/P0137/2007(H5N1... 36.2 0.76
gb|CY040975.1| Influenza A virus (A/chicken/Laos/P0130/2007(H... 36.2 0.76
gb|CY040959.1| Influenza A virus (A/duck/Laos/A0617/2007(H5N1... 36.2 0.76
gb|CY040951.1| Influenza A virus (A/duck/Laos/A0503/2007(H5N1... 36.2 0.76
gb|CY040943.1| Influenza A virus (A/chicken/Laos/A0464/2007(H... 36.2 0.76
gb|CY040935.1| Influenza A virus (A/duck/Laos/A0301/2007(H5N1... 36.2 0.76
gb|CY040927.1| Influenza A virus (A/duck/Laos/P0161/2007(H5N1... 36.2 0.76
gb|CY040919.1| Influenza A virus (A/duck/Laos/P0117/2007(H5N1... 36.2 0.76
gb|CY040911.1| Influenza A virus (A/duck/Laos/P0127/2007(H5N1... 36.2 0.76
gb|CY040900.1| Influenza A virus (A/pigeon/Laos/P0022/2007(H5... 36.2 0.76
gb|GQ148847.1| Influenza A virus (A/chicken/Israel/953/2007(H... 36.2 0.76
gb|GQ148846.1| Influenza A virus (A/chicken/Israel/951/2007(H... 36.2 0.76
gb|GQ148845.1| Influenza A virus (A/chicken/Israel/883/2008(H... 36.2 0.76
gb|GQ148844.1| Influenza A virus (A/chicken/Israel/869/2007(H... 36.2 0.76
gb|GQ148842.1| Influenza A virus (A/chicken/Israel/694/2008(H... 36.2 0.76
gb|GQ148841.1| Influenza A virus (A/turkey/Israel/689/2008(H9... 36.2 0.76
gb|GQ148840.1| Influenza A virus (A/chicken/Israel/375/2007(H... 36.2 0.76
gb|GQ148839.1| Influenza A virus (A/chicken/Israel/330/2008(H... 36.2 0.76
gb|GQ148838.1| Influenza A virus (A/chicken/Israel/310/2008(H... 36.2 0.76
gb|GQ148837.1| Influenza A virus (A/chicken/Israel/184/2009(H... 36.2 0.76
gb|GQ148836.1| Influenza A virus (A/chicken/Israel/182/2008(H... 36.2 0.76
gb|GQ148835.1| Influenza A virus (A/chicken/Israel/54/2008(H9... 36.2 0.76
gb|GQ148834.1| Influenza A virus (A/chicken/Israel/1040/2007(... 36.2 0.76
gb|CY038618.1| Influenza A virus (A/Hong Kong/HKU20/2004(H3N2... 36.2 0.76
gb|EU874898.2| Influenza A virus (A/chicken/Guangdong/1/2005(... 36.2 0.76
gb|FJ719835.1| Influenza A virus (A/chicken/Manipur/NIV9743/2... 36.2 0.76
dbj|AB462296.1| Influenza A virus (A/Shanghai/1/2006(H5N1)) g... 36.2 0.76
gb|FJ750822.1| Influenza A virus (A/chicken/Sukhothai/NIAH114... 36.2 0.76
gb|FJ750815.1| Influenza A virus (A/chicken/Uthaithani/NIAH11... 36.2 0.76
gb|CY037771.1| Influenza A virus (A/chicken/Sihala/NARC3303.4... 36.2 0.76
gb|CY037763.1| Influenza A virus (A/chicken/Rawalakot/NARC244... 36.2 0.76
gb|FJ461599.1| Influenza A virus (A/swine/Korea/C13/2008(H5N2... 36.2 0.76
gb|FJ654296.1| Influenza A virus (A/chicken/Primorsky/85/2008... 36.2 0.76
gb|EU420049.1| Influenza A virus (A/raccoon dog/Shandong/sd2/... 36.2 0.76
gb|EU420041.1| Influenza A virus (A/raccoon dog/Shandong/sd1/... 36.2 0.76
emb|AM914028.1| Influenza A virus (A/domestic duck/Germany/R2... 36.2 0.76
emb|AM914023.1| Influenza A virus (A/domestic duck/Germany/R1... 36.2 0.76
emb|AM914018.1| Influenza A virus (A/domestic duck/Germany/R1... 36.2 0.76
emb|AM914006.1| Influenza A virus (A/domestic goose/Germany/R... 36.2 0.76
emb|AM914001.1| Influenza A virus (A/black-necked grebe/Germa... 36.2 0.76
emb|AM913997.1| Influenza A virus (A/mute swan/Germany/R1359/... 36.2 0.76
emb|AM913993.1| Influenza A virus (A/mute swan/Germany/R1349/... 36.2 0.76
emb|AM913990.1| Influenza A virus (A/whooper swan/Germany/R88... 36.2 0.76
emb|AM911102.1| Influenza A virus (A/Anas acuta/Slovenia/470/... 36.2 0.76
emb|AM911097.1| Influenza A virus (A/Anas platyrhynchos/Slove... 36.2 0.76
emb|AM911092.1| Influenza A virus (A/Ardea cinerea/Slovenia/1... 36.2 0.76
emb|AM911087.1| Influenza A virus (A/cygnus olor/Slovenia/156... 36.2 0.76
emb|AM911072.1| Influenza A virus (A/Peregrine falcon/Slovaki... 36.2 0.76
emb|AM911071.1| Influenza A virus (A/Mergus albellus/Slovakia... 36.2 0.76
emb|FM177120.1| Influenza A virus (A/chicken/Germany/R3234/20... 36.2 0.76
emb|FM177136.1| Influenza A virus (A/chicken/Germany/R3294/20... 36.2 0.76
emb|FM177128.1| Influenza A virus (A/chicken/Germany/R3272/20... 36.2 0.76
emb|FM165531.1| Influenza A virus (A/Peking duck/Germany/R195... 36.2 0.76
emb|FM165523.1| Influenza A virus (A/Cygnus olor/Germany/R137... 36.2 0.76
emb|FM163449.1| Influenza A virus (A/turkey/Poland/R3249/2007... 36.2 0.76
emb|FM163441.1| Influenza A virus (A/chicken/Poland/R3248/200... 36.2 0.76
gb|FJ581428.1| Influenza A virus (A/chicken/Zhejiang/HJ/2007(... 36.2 0.76
gb|FJ547484.1| Influenza A virus (A/chicken/Zibo/B1/2008(H9N2... 36.2 0.76
gb|FJ547483.1| Influenza A virus (A/chicken/Henan/L1/2008(H9N... 36.2 0.76
gb|EU147294.1| Influenza A virus (A/avian/Russia/5354-vac/200... 36.2 0.76
gb|EU930879.1| Influenza A virus (A/chicken/Vietnam/200/2005(... 36.2 0.76
gb|EU930887.1| Influenza A virus (A/duck/Vietnam/201/2005(H5N... 36.2 0.76
gb|EU930895.1| Influenza A virus (A/chicken/Vietnam/202/2005(... 36.2 0.76
gb|EU930903.1| Influenza A virus (A/duck/Vietnam/203/2005(H5N... 36.2 0.76
gb|EU930911.1| Influenza A virus (A/duck/Vietnam/204/2005(H5N... 36.2 0.76
gb|EU930919.1| Influenza A virus (A/duck/Vietnam/205/2005(H5N... 36.2 0.76
gb|EU930927.1| Influenza A virus (A/duck/Vietnam/206/2005(H5N... 36.2 0.76
gb|EU930935.1| Influenza A virus (A/duck/Vietnam/207/2005(H5N... 36.2 0.76
gb|EU930943.1| Influenza A virus (A/duck/Vietnam/208/2005(H5N... 36.2 0.76
gb|EU930951.1| Influenza A virus (A/chicken/Vietnam/209/2005(... 36.2 0.76
gb|EU930959.1| Influenza A virus (A/duck/Vietnam/210/2005(H5N... 36.2 0.76
gb|EU930967.1| Influenza A virus (A/Muscovy duck/Vietnam/211/... 36.2 0.76
gb|EU930975.1| Influenza A virus (A/chicken/Vietnam/212/2005(... 36.2 0.76
gb|EU930983.1| Influenza A virus (A/Muscovy duck/Vietnam/213/... 36.2 0.76
gb|EU930991.1| Influenza A virus (A/duck/Vietnam/215/2005(H5N... 36.2 0.76
gb|EU930999.1| Influenza A virus (A/chicken/Vietnam/216/2005(... 36.2 0.76
gb|EU931007.1| Influenza A virus (A/Muscovy duck/Vietnam/217/... 36.2 0.76
gb|EU931015.1| Influenza A virus (A/duck/Vietnam/218/2005(H5N... 36.2 0.76
gb|EU931023.1| Influenza A virus (A/duck/Vietnam/219/2005(H5N... 36.2 0.76
gb|EU499375.1| Influenza A virus (A/Laos/Nong Khai 1/2007(H5N... 36.2 0.76
gb|CY036722.1| Influenza A virus (A/chicken/Vietnam/NCVD11/20... 36.2 0.76
gb|CY036714.1| Influenza A virus (A/chicken/Vietnam/933/2004(... 36.2 0.76
gb|CY036706.1| Influenza A virus (A/chicken/Vietnam/925/2004(... 36.2 0.76
gb|CY036698.1| Influenza A virus (A/chicken/Vietnam/921/2004(... 36.2 0.76
gb|EU871941.1| Influenza A virus (A/common gull/Chany/P/2006(... 36.2 0.76
dbj|AB440346.1| Influenza A virus (A/quail/Angthong/71/2004(H... 36.2 0.76
dbj|AB440340.1| Influenza A virus (A/duck/Angthong/72/2004(H5... 36.2 0.76
dbj|AB440339.1| Influenza A virus (A/chicken/Suphanburi/1/200... 36.2 0.76
dbj|AB434377.1| Influenza A virus (A/swine/Ratchaburi/NIAH874... 36.2 0.76
dbj|AB434361.1| Influenza A virus (A/swine/Nakhon pathom/NIAH... 36.2 0.76
gb|FJ492974.1| Influenza A virus (A/chicken/Henan/L3/2008(H9N... 36.2 0.76
gb|FJ492973.1| Influenza A virus (A/chicken/Henan/L2/2008(H9N... 36.2 0.76
gb|FJ492972.1| Influenza A virus (A/chicken/Zibo/L2/2008(H9N2... 36.2 0.76
gb|FJ492971.1| Influenza A virus (A/chicken/Shandong/L1/2007(... 36.2 0.76
gb|FJ464646.1| Influenza A virus (A/turkey/Israel/1608/2006(H... 36.2 0.76
gb|FJ464645.1| Influenza A virus (A/chicken/Israel/1548/2006(... 36.2 0.76
gb|FJ464644.1| Influenza A virus (A/chicken/Israel/1525/2006(... 36.2 0.76
gb|FJ464643.1| Influenza A virus (A/chicken/Israel/1033/2007(... 36.2 0.76
gb|FJ464642.1| Influenza A virus (A/chicken/Israel/933/2007(H... 36.2 0.76
gb|FJ464641.1| Influenza A virus (A/turkey/Israel/900/2007(H9... 36.2 0.76
gb|FJ464640.1| Influenza A virus (A/chicken/Israel/728/2007(H... 36.2 0.76
gb|FJ464639.1| Influenza A virus (A/chicken/Israel/524/2008(H... 36.2 0.76
gb|FJ464638.1| Influenza A virus (A/chicken/Israel/449/2007(H... 36.2 0.76
gb|FJ464637.1| Influenza A virus (A/chicken/Israel/402/2007(H... 36.2 0.76
gb|FJ464636.1| Influenza A virus (A/chicken/Israel/386/2007(H... 36.2 0.76
gb|FJ464635.1| Influenza A virus (A/avian/Israel/314/2008(H9N... 36.2 0.76
gb|FJ464634.1| Influenza A virus (A/avian/Israel/313/2008(H9N... 36.2 0.76
gb|FJ464633.1| Influenza A virus (A/chicken/Israel/292/2008(H... 36.2 0.76
gb|FJ464632.1| Influenza A virus (A/chicken/Israel/215/2007(H... 36.2 0.76
gb|FJ464631.1| Influenza A virus (A/chicken/Israel/114/2007(H... 36.2 0.76
gb|FJ464630.1| Influenza A virus (A/chicken/Israel/1638/2006(... 36.2 0.76
gb|EU697210.1| Influenza A virus (A/turkey/North Carolina/353... 36.2 0.76
gb|CY036262.1| Influenza A virus (A/magpie robin/Hong Kong/18... 36.2 0.76
gb|CY036254.1| Influenza A virus (A/magpie robin/Hong Kong/10... 36.2 0.76
gb|CY036246.1| Influenza A virus (A/grey heron/Hong Kong/1046... 36.2 0.76
gb|CY036238.1| Influenza A virus (A/great egret/Hong Kong/807... 36.2 0.76
gb|CY036230.1| Influenza A virus (A/black-crowned night heron... 36.2 0.76
gb|CY036222.1| Influenza A virus (A/common buzzard/Hong Kong/... 36.2 0.76
gb|CY036214.1| Influenza A virus (A/grey heron/Hong Kong/3088... 36.2 0.76
gb|CY036206.1| Influenza A virus (A/little egret/Hong Kong/88... 36.2 0.76
gb|CY036198.1| Influenza A virus (A/little egret/Hong Kong/85... 36.2 0.76
gb|CY036190.1| Influenza A virus (A/house crow/Hong Kong/5288... 36.2 0.76
gb|CY036182.1| Influenza A virus (A/Daurian starling/Hong Kon... 36.2 0.76
gb|CY036174.1| Influenza A virus (A/common magpie/Hong Kong/5... 36.2 0.76
gb|CY036166.1| Influenza A virus (A/red-billed starling/Hong ... 36.2 0.76
gb|CY036150.1| Influenza A virus (A/scaly-breasted munia/Hong... 36.2 0.76
gb|CY036126.1| Influenza A virus (A/common kestrel/Hong Kong/... 36.2 0.76
gb|CY036118.1| Influenza A virus (A/silver-eared mesia/Hong K... 36.2 0.76
gb|CY036110.1| Influenza A virus (A/blue magpie/Hong Kong/199... 36.2 0.76
gb|CY036102.1| Influenza A virus (A/house crow/Hong Kong/1203... 36.2 0.76
gb|CY036094.1| Influenza A virus (A/peregrine falcon/Hong Kon... 36.2 0.76
gb|CY036086.1| Influenza A virus (A/white-backed munia/Hong K... 36.2 0.76
gb|CY036078.1| Influenza A virus (A/Japanese white-eye/Hong K... 36.2 0.76
gb|CY036070.1| Influenza A virus (A/house crow/Hong Kong/719/... 36.2 0.76
gb|CY036046.1| Influenza A virus (A/peregrine falcon/Hong Kon... 36.2 0.76
gb|CY030545.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030539.1| Influenza A virus (A/chicken/Vietnam/NCVD-45/2... 36.2 0.76
gb|CY030532.1| Influenza A virus (A/chicken/Vietnam/NCVD-44/2... 36.2 0.76
gb|CY030524.1| Influenza A virus (A/duck/Vietnam/NCVD-43/2007... 36.2 0.76
gb|CY030516.1| Influenza A virus (A/chicken/Vietnam/NCVD-42/2... 36.2 0.76
gb|CY030510.1| Influenza A virus (A/chicken/Vietnam/NCVD-41/2... 36.2 0.76
gb|CY030502.1| Influenza A virus (A/chicken/Vietnam/NCVD-40/2... 36.2 0.76
gb|CY030494.1| Influenza A virus (A/goose/Laos/NCVD-39/2007(H... 36.2 0.76
gb|CY030486.1| Influenza A virus (A/chicken/Laos/NCVD-38/2007... 36.2 0.76
gb|CY030478.1| Influenza A virus (A/pigeon/Laos/NCVD-36/2007(... 36.2 0.76
gb|CY030470.1| Influenza A virus (A/duck/Laos/NCVD-35/2007(H5... 36.2 0.76
gb|CY030462.1| Influenza A virus (A/duck/Vietnam/NCVD-34/2007... 36.2 0.76
gb|CY030454.1| Influenza A virus (A/duck/Vietnam/NCVD-31/2007... 36.2 0.76
gb|CY030446.1| Influenza A virus (A/duck/Vietnam/NCVD-30/2007... 36.2 0.76
gb|CY030439.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030432.1| Influenza A virus (A/duck/Vietnam/NCVD-26/2007... 36.2 0.76
gb|CY030424.1| Influenza A virus (A/duck/Vietnam/NCVD-25/2007... 36.2 0.76
gb|CY030416.1| Influenza A virus (A/chicken/Vietnam/NCVD-24/2... 36.2 0.76
gb|CY030408.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030400.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030392.1| Influenza A virus (A/chicken/Vietnam/NCVD-21/2... 36.2 0.76
gb|CY030384.1| Influenza A virus (A/chicken/Vietnam/NCVD-20/2... 36.2 0.76
gb|CY030376.1| Influenza A virus (A/duck/Vietnam/NCVD-19/2007... 36.2 0.76
gb|CY030368.1| Influenza A virus (A/duck/Vietnam/NCVD-18/2007... 36.2 0.76
gb|CY030360.1| Influenza A virus (A/duck/Vietnam/NCVD-17/2007... 36.2 0.76
gb|CY030352.1| Influenza A virus (A/duck/Vietnam/NCVD-16/2007... 36.2 0.76
gb|CY030344.1| Influenza A virus (A/chicken/Vietnam/NCVD-15/2... 36.2 0.76
gb|CY030336.1| Influenza A virus (A/duck/Vietnam/NCVD-13/2007... 36.2 0.76
gb|CY030328.1| Influenza A virus (A/duck/Vietnam/NCVD-12/2007... 36.2 0.76
gb|CY030320.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030312.1| Influenza A virus (A/chicken/Vietnam/NCVD-10/2... 36.2 0.76
gb|CY030304.1| Influenza A virus (A/duck/Vietnam/NCVD-9/2007(... 36.2 0.76
gb|CY030296.1| Influenza A virus (A/duck/Vietnam/NCVD-8/2007(... 36.2 0.76
gb|CY030288.1| Influenza A virus (A/duck/Vietnam/NCVD-7/2007(... 36.2 0.76
gb|CY030280.1| Influenza A virus (A/duck/Vietnam/NCVD-6/2007(... 36.2 0.76
gb|CY030272.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030264.1| Influenza A virus (A/Muscovy duck/Vietnam/NCVD... 36.2 0.76
gb|CY030256.1| Influenza A virus (A/chicken/Vietnam/NCVD-3/20... 36.2 0.76
gb|CY030248.1| Influenza A virus (A/duck/Vietnam/NCVD-2/2007(... 36.2 0.76
gb|CY030240.1| Influenza A virus (A/duck/Vietnam/NCVD-1/2007(... 36.2 0.76
gb|CY035901.1| Influenza A virus (A/chicken/Vietnam/NCVD12/20... 36.2 0.76
dbj|AB450595.1| Influenza A virus (A/tree sparrow/Rachaburi/V... 36.2 0.76
dbj|AB450594.1| Influenza A virus (A/open-bill stork/Thailand... 36.2 0.76
dbj|AB450593.1| Influenza A virus (A/tree sparrow/Thailand/VS... 36.2 0.76
dbj|AB450592.1| Influenza A virus (A/pigeon/Thailand/VSMU-13-... 36.2 0.76
dbj|AB450591.1| Influenza A virus (A/pigeon/Thailand/VSMU-11-... 36.2 0.76
dbj|AB450590.1| Influenza A virus (A/open-bill stork/Thailand... 36.2 0.76
dbj|AB450589.1| Influenza A virus (A/open-bill stork/Thailand... 36.2 0.76
dbj|AB450588.1| Influenza A virus (A/chicken/Phichit/NIAH6069... 36.2 0.76
dbj|AB450587.1| Influenza A virus (A/quail/Nakhon Pathom/NIAH... 36.2 0.76
dbj|AB450586.1| Influenza A virus (A/chicken/Suphanburi/NIAH1... 36.2 0.76
dbj|AB450585.1| Influenza A virus (A/duck/Angthong/NIAH8246/2... 36.2 0.76
dbj|AB450584.1| Influenza A virus (A/chicken/Suphanburi/NIAH7... 36.2 0.76
dbj|AB450583.1| Influenza A virus (A/chicken/NaraThiwat/NIAH1... 36.2 0.76
dbj|AB450582.1| Influenza A virus (A/quail/Phathumthani/NIAH2... 36.2 0.76
dbj|AB450581.1| Influenza A virus (A/chicken/Kohn Kaen/NIAH33... 36.2 0.76
dbj|AB450580.1| Influenza A virus (A/chicken/Kalasin/NIAH316/... 36.2 0.76
gb|FJ390031.1| Influenza A virus (A/chicken/Astana/6/2005(H5N... 36.2 0.76
gb|CY029112.2| Influenza A virus (A/chicken/Shantou/28/2002(H... 36.2 0.76
gb|CY029091.2| Influenza A virus (A/chicken/Shantou/5738/2001... 36.2 0.76
gb|CY035242.1| Influenza A virus (A/falcon/Saudi Arabia/D1936... 36.2 0.76
gb|EU221252.1| Influenza A virus (A/duck/Nong-Khai/Thailand/K... 36.2 0.76
gb|EU753283.1| Influenza A virus (A/chicken/Shanghai/3/2000(H... 36.2 0.76

NP from Iowa swine

gb|CY053354.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 40.1 0.049
gb|CY053349.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 40.1 0.049
gb|CY053343.1| Influenza A virus (A/Beijing/719/2009(H1N1)) s... 40.1 0.049
gb|CY053339.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 40.1 0.049
gb|CY053333.1| Influenza A virus (A/Beijing/717/2009(H1N1)) s... 40.1 0.049
gb|CY022072.1| Influenza A virus (A/swine/Iowa/1/1976(H1N1)) ... 40.1 0.049

LOCUS CY053338 1724 bp cRNA linear VRL 14-DEC-2009
DEFINITION Influenza A virus (A/Beijing/718/2009(H1N1)) segment 4 sequence.
ACCESSION CY053338
VERSION CY053338.1 GI:280967902
DBLINK Project:37813
KEYWORDS .
SOURCE Influenza A virus (A/Beijing/718/2009(H1N1))
ORGANISM Influenza A virus (A/Beijing/718/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1724)
AUTHORS Liu,W., Wei,M., Zhang,L., Tang,F., Xu,L., Yang,J., Yang,H. and
Cao,W.
TITLE Sequences from an outbreak of pandemic influenza in Beijing, China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1724)
AUTHORS Liu,W., Wei,M., Zhang,L., Tang,F., Xu,L., Yang,J., Yang,H. and
Cao,W.
TITLE Direct Submission
JOURNAL Submitted (14-DEC-2009) Beijing Institute of Microbiology and
Epidemiology, 20#, Dongdajie street, Fengtai District, Beijing,
China
FEATURES Location/Qualifiers
source 1..1724
/organism="Influenza A virus (A/Beijing/718/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Beijing/718/2009(H1N1)"
/serotype="H1N1"
/isolation_source="nasal swab"
/host="human"
/db_xref="taxon:699001"
/segment="4"
/country="China: Beijing"
/collection_date="Nov-2009"
gene 15..1715
/gene="HA"
CDS 15..1715
/gene="HA"
/function="receptor binding and fusion protein"
/codon_start=1
/product="hemagglutinin"
/protein_id="ACZ98546.1"
/db_xref="GI:280967903"
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDPNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLTTG
LRNVPSIQYRGLFGAITGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEI
TNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER
TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSE
EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI"
sig_peptide 15..65
/gene="HA"
mat_peptide 66..1046
/gene="HA"
/product="HA1"
mat_peptide 1047..1712
/gene="HA"
/product="HA2"
ORIGIN
1 caaaagcaac aaaaatgaag gcaatactag tagttctgct atatacattt gcaaccgcaa
61 atgcagacac attatgtata ggttatcatg cgaacaattc aacagacact gtagacacag
121 tactagaaaa gaatgtaaca gtaacacact ctgttaacct tctagaagac aagcataacg
181 ggaaactatg caaactaaga ggggtagccc cattgcattt gggtaaatgt aacattgctg
241 gctggatcct gggaaatcca gagtgtgaat cactctccac agcaagctca tggtcctaca
301 ttgtggaaac atctagttca gacaatggaa cgtgttaccc aggagatttc atcgattatg
361 aggagctaag agagcaattg agctcagtgt catcatttga aaggtttgag atattcccca
421 agacaagttc atggcccaat catgacccga acaaaggtgt aacggcagca tgtcctcatg
481 ctggagcaaa aagcttctac aaaaatttaa tatggctagt taaaaaagga aattcatacc
541 caaagctcag caaatcctac attaatgata aagggaaaga agtcctcgtg ctatggggca
601 ttcaccatcc atctactagt gctgaccaac aaagtctcta tcagaatgca gatgcatatg
661 tttttgtggg gacatcaaga tacagcaaga agttcaagcc ggaaatagca ataagaccca
721 aagtgaggga tcaagaaggg agaatgaact attactggac actagtagag ccgggagaca
781 aaataacatt cgaagcaact ggaaatctag tggtaccgag atatgcattc gcaatggaaa
841 gaaatgctgg atctggtatt atcatttcag atacaccagt ccacgattgc aatacaactt
901 gtcagacacc caagggtgct ataaacacca gcctcccatt tcagaatata catccgatca
961 caattggaaa atgtccaaaa tatgtaaaaa gcacaaaatt gagactgacc acaggattga
1021 ggaatgtacc gtctattcaa tatagaggct tatttggggc catcaccggt ttcattgaag
1081 gggggtggac agggatggta gatggatggt acggttatca ccatcaaaat gagcaggggt
1141 caggatatgc agccgacctg aagagcacac agaatgccat tgacgagatt actaacaaag
1201 taaattctgt tattgaaaag atgaatacac agttcacagc agtaggtaaa gagttcaatc
1261 acctggaaaa aagaatagag aatttaaata aaaaagttga tgatggtttc ctggacattt
1321 ggacttacaa tgccgaactg ttggttctat tggaaaatga aagaactttg gactaccacg
1381 attcaaatgt gaagaactta tatgaaaagg taagaagcca gttaaaaaac aatgccaagg
1441 aaattggaaa cggctgcttt gaattttacc acaaatgcga taacacgtgc atggaaagtg
1501 tcaaaaatgg gacttatgac tacccaaaat actcagagga agcaaaatta aacagagaag
1561 aaatagatgg ggtaaaactg gaatcaacaa ggatttacca gattttggcg atctattcaa
1621 ctgtcgccag ttcattggta ctggtagtct ccctgggggc aatcagtttc tggatgtgct
1681 ctaatgggtc tctacagtgt agaatatgta tttaacatta ggat

The HA sequence has three changes which flank the cleavage site. The change S-->Y at the penultimate position in HA1 matches WSN/33.

HA travel log (only three HA sequences have been released)

gb|CY053353.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 34.2 3.0
gb|CY053348.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 34.2 3.0
gb|CY053338.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 34.2 3.0
gb|GU271944.1| Influenza A virus (A/Chita/01/2009(H1N1)) segm... 34.2 3.0
gb|CY050845.1| Influenza A virus (A/Ulaanbaatar/6266/2009(H1N... 34.2 3.0
gb|CY050844.1| Influenza A virus (A/Ulaanbaatar/5882/2009(H1N... 34.2 3.0
gb|CY051695.1| Influenza A virus (A/New York/4777/2009(H1N1))... 34.2 3.0
gb|GU198201.1| Influenza A virus (A/Nanjing/3/2009(H1N1)) seg... 34.2 3.0
gb|CY047713.1| Influenza A virus (A/Hangzhou/2/2009(H1N1)) se... 34.2 3.0
gb|GU057021.1| Influenza A virus (A/Chengdu/54/2009(H1N1)) se... 34.2 3.0
gb|GU057020.1| Influenza A virus (A/Chengdu/47/2009(H1N1)) se... 34.2 3.0
gb|GU057019.1| Influenza A virus (A/Chengdu/40/2009(H1N1)) se... 34.2 3.0
gb|GU057018.1| Influenza A virus (A/Chengdu/39/2009(H1N1)) se... 34.2 3.0
gb|GU057017.1| Influenza A virus (A/Chengdu/33/2009(H1N1)) se... 34.2 3.0
gb|GU057016.1| Influenza A virus (A/Chengdu/31/2009(H1N1)) se... 34.2 3.0
gb|GU057015.1| Influenza A virus (A/Chengdu/21/2009(H1N1)) se... 34.2 3.0
gb|GU057014.1| Influenza A virus (A/Chengdu/18/2009(H1N1)) se... 34.2 3.0
gb|GU057013.1| Influenza A virus (A/Chengdu/14/2009(H1N1)) se... 34.2 3.0
gb|GU057012.1| Influenza A virus (A/Chengdu/06/2009(H1N1)) se... 34.2 3.0
gb|GU057011.1| Influenza A virus (A/Chengdu/04/2009(H1N1)) se... 34.2 3.0
gb|GU057010.1| Influenza A virus (A/Chengdu/03/2009(H1N1)) se... 34.2 3.0

gb|CY053353.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 36.2 0.76
gb|CY053348.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 36.2 0.76
gb|CY053338.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 36.2 0.76
gb|CY051127.1| Influenza A virus (A/Wisconsin/629-D00119/2009... 36.2 0.76

gb|CY053353.1| Influenza A virus (A/Beijing/721/2009(H1N1)) s... 32.2 12
gb|CY053348.1| Influenza A virus (A/Beijing/720/2009(H1N1)) s... 32.2 12
gb|CY053338.1| Influenza A virus (A/Beijing/718/2009(H1N1)) s... 32.2 12
gb|CY052202.1| Influenza A virus (A/Texas/42303371/2009(H1N1)... 32.2 12
gb|CY051399.1| Influenza A virus (A/Wisconsin/629-S0252/2009(... 32.2 12
gb|CY051247.1| Influenza A virus (A/Wisconsin/629-S0035/2009(... 32.2 12
gb|CY051111.1| Influenza A virus (A/Wisconsin/629-D02263/2009... 32.2 12
gb|CY050951.1| Influenza A virus (A/Wisconsin/629-D00724/2009... 32.2 12
gb|CY044220.1| Influenza A virus (A/Taiwan/T1773/2009(H1N1)) ... 32.2 12
gb|CY044251.1| Influenza A virus (A/San Antonio/PR923/2009(H1... 32.2 12
gb|CY044243.1| Influenza A virus (A/San Antonio/PR922/2009(H1... 32.2 12
gb|CY044235.1| Influenza A virus (A/San Antonio/PR921/2009(H1... 32.2 12
gb|GQ457487.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 32.2 12
gb|GQ377072.1| Influenza A virus (A/Texas/04/2009(H1N1)) segm... 32.2 12
gb|GQ374897.1| Influenza A virus (A/reassortant/IDCDC-RG22(Ne... 32.2 12
gb|GQ374895.1| Influenza A virus (A/reassortant/IDCDC-RG20(Te... 32.2 12
gb|GQ374893.1| Influenza A virus (A/reassortant/IDCDC-RG18(Te... 32.2 12
gb|GQ229309.1| Influenza A virus (A/swine/Hong Kong/78/2003(H... 32.2 12
gb|GQ232076.1| Influenza A virus (A/Texas/11/2009(H1N1)) segm... 32.2 12
gb|GQ232002.1| Influenza A virus (A/Texas/10/2009(H1N1)) segm... 32.2 12
gb|GQ221798.1| Influenza A virus (A/Texas/04/2009(H1N1)) segm... 32.2 12
gb|GQ221791.1| Influenza A virus (A/Oklahoma/01/2009(H1N1)) s... 32.2 12
gb|GQ219781.1| Influenza A virus (A/reassortant/IDCDC-RG15(Te... 32.2 12
gb|GQ200221.1| Influenza A virus (A/Texas/12/2009(H1N1)) segm... 32.2 12
gb|GQ168861.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 32.2 12
gb|GQ168671.1| Influenza A virus (A/Texas/09/2009(H1N1)) segm... 32.2 12
gb|GQ168633.1| Influenza A virus (A/Texas/08/2009(H1N1)) segm... 32.2 12
gb|GQ160586.1| Influenza A virus (A/North Carolina/05/2009(H1... 32.2 12
gb|GQ160574.1| Influenza A virus (A/Texas/22/2009(H1N1)) segm... 32.2 12
gb|GQ117059.1| Influenza A virus (A/Kansas/02/2009(H1N1)) seg... 32.2 12
gb|GQ117051.1| Influenza A virus (A/Texas/08/2009(H1N1)) segm... 32.2 12
gb|GQ117032.1| Influenza A virus (A/Texas/09/2009(H1N1)) segm... 32.2 12
gb|FJ984385.1| Influenza A virus (A/Texas/06/2009(H1N1)) segm... 32.2 12
gb|FJ981615.1| Influenza A virus (A/Texas/04/2009(H1N1)) segm... 32.2 12
gb|FJ981612.1| Influenza A virus (A/Texas/04/2009(H1N1)) segm... 32.2 12
gb|FJ966982.1| Influenza A virus (A/Texas/04/2009(H1N1)) segm... 32.2 12
gb|FJ966959.1| Influenza A virus (A/Texas/05/2009(H1N1)) segm... 32.2 12
gb|FJ688266.1| Influenza A virus (A/swine/Thailand/HF6/2005(H... 32.2 12
dbj|AB434296.1| Influenza A virus (A/swine/Ratchaburi/NIAH550... 32.2 12
gb|EU296603.1| Influenza A virus (A/swine/Chonburi/05CB1/2005... 32.2 12

Dr niman,could you explain the consequences of this rapid evolution?