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PostPosted: Fri Feb 20, 2015 9:33 pm 
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Location: Pittsburgh, PA USA
Full sequences from backyard farms in Benton County, Washington and Douglas County, Oregon highlight H5N2 and H5N8 clonal expansion. H5N2 matches Northern Teal in Whatcom County and turkey farm in Fraser Valley, while H5N8 matches gyrfalcon in Whatcom County.

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PostPosted: Fri Feb 20, 2015 10:54 pm 
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Location: Pittsburgh, PA USA
Fujian H5N2 map with Benton Country, Oregon backyard farms

https://www.google.com/maps/d/edit?mid= ... NlIM&hl=en

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PostPosted: Fri Feb 20, 2015 10:55 pm 
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Location: Pittsburgh, PA USA
Fujian H5N8 map with Douglas County, Washington backyard farm

https://www.google.com/maps/d/edit?auth ... IjI0Pz2tn8

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PostPosted: Sat Feb 21, 2015 5:06 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS KP739381 1744 bp cRNA linear VRL 18-FEB-2015
DEFINITION Influenza A virus (A/chicken/Washington/61-9/2014(H5N2)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION KP739381
VERSION KP739381.1 GI:756762605
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Washington/61-9/2014(H5N2))
ORGANISM Influenza A virus (A/chicken/Washington/61-9/2014(H5N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1744)
AUTHORS Killian,M.L.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2015) Diagnostic Virology Laboratory, National
Veterinary Services Laboratories (NVSL), USDA, 1920 Dayton Avenue,
Ames, IA 50010, USA
COMMENT GenBank Accession Numbers KP739378-KP739385 represent sequences
from the 8 segments of Influenza A virus
(A/chicken/Washington/61-9/2014(H5N2)).

##Assembly-Data-START##
Assembly Method :: SeqMan NGen v. 4
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1744
/organism="Influenza A virus
(A/chicken/Washington/61-9/2014(H5N2))"
/mol_type="viral cRNA"
/strain="A/chicken/Washington/61-9/2014"
/serotype="H5N2"
/isolation_source="oropharyngeal swab"
/host="chicken; backyard poultry"
/db_xref="taxon:1609055"
/segment="4"
/country="USA: Benton County, Washington"
/collection_date="30-Dec-2014"
/note="NVSL 15-000061; EP1; Eurasian origin (EA-H5N8 clade
2.3.4.4)-North American reassortant"

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PostPosted: Sat Feb 21, 2015 5:10 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS KP739389 1744 bp cRNA linear VRL 18-FEB-2015
DEFINITION Influenza A virus (A/domestic duck/Washington/61-16/2014(H5N2))
segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION KP739389
VERSION KP739389.1 GI:756762586
KEYWORDS .
SOURCE Influenza A virus (A/domestic duck/Washington/61-16/2014(H5N2))
ORGANISM Influenza A virus (A/domestic duck/Washington/61-16/2014(H5N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1744)
AUTHORS Killian,M.L.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2015) Diagnostic Virology Laboratory, National
Veterinary Services Laboratories (NVSL), USDA, 1920 Dayton Avenue,
Ames, IA 50010, USA
COMMENT GenBank Accession Numbers KP739386-KP739393 represent sequences
from the 8 segments of Influenza A virus (A/domestic
duck/Washington/61-16/2014(H5N2)).

##Assembly-Data-START##
Assembly Method :: SeqMan NGen v. 4
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1744
/organism="Influenza A virus (A/domestic
duck/Washington/61-16/2014(H5N2))"
/mol_type="viral cRNA"
/strain="A/domestic duck/Washington/61-16/2014"
/serotype="H5N2"
/isolation_source="cloacal swab"
/host="domestic duck; backyard poultry"
/db_xref="taxon:1609056"
/segment="4"
/country="USA: Benton County, Washington"
/collection_date="30-Dec-2014"
/note="NVSL 15-000061; EP1; Eurasian origin (EA-H5N8 clade
2.3.4.4)-North American reassortant"

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PostPosted: Sat Feb 21, 2015 5:12 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS KP739397 1744 bp cRNA linear VRL 18-FEB-2015
DEFINITION Influenza A virus (A/turkey/Washington/61-22/2014(H5N2)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION KP739397
VERSION KP739397.1 GI:756762567
KEYWORDS .
SOURCE Influenza A virus (A/turkey/Washington/61-22/2014(H5N2))
ORGANISM Influenza A virus (A/turkey/Washington/61-22/2014(H5N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1744)
AUTHORS Killian,M.L.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2015) Diagnostic Virology Laboratory, National
Veterinary Services Laboratories (NVSL), USDA, 1920 Dayton Avenue,
Ames, IA 50010, USA
COMMENT GenBank Accession Numbers KP739394-KP739401 represent sequences
from the 8 segments of Influenza A virus
(A/turkey/Washington/61-22/2014(H5N2)).

##Assembly-Data-START##
Assembly Method :: SeqMan NGen v. 4
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1744
/organism="Influenza A virus
(A/turkey/Washington/61-22/2014(H5N2))"
/mol_type="viral cRNA"
/strain="A/turkey/Washington/61-22/2014"
/serotype="H5N2"
/isolation_source="oropharyngeal swab"
/host="turkey; backyard poultry"
/db_xref="taxon:1609058"
/segment="4"
/country="USA: Benton County, Washington"
/collection_date="30-Dec-2014"
/note="NVSL 15-000061; EP1; Eurasian origin (EA-H5N8 clade
2.3.4.4)-North American reassortant"

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PostPosted: Sat Feb 21, 2015 5:15 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS KP739413 1744 bp cRNA linear VRL 18-FEB-2015
DEFINITION Influenza A virus (A/guinea fowl/Oregon/41613-1/2014(H5N8))
segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION KP739413
VERSION KP739413.1 GI:756762529
KEYWORDS .
SOURCE Influenza A virus (A/guinea fowl/Washington/41613-1/2014(H5N8))
ORGANISM Influenza A virus (A/guinea fowl/Washington/41613-1/2014(H5N8))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1744)
AUTHORS Killian,M.L.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2015) Diagnostic Virology Laboratory, National
Veterinary Services Laboratories (NVSL), USDA, 1920 Dayton Avenue,
Ames, IA 50010, USA
COMMENT GenBank Accession Numbers KP739410-KP739417 represent sequences
from the 8 segments of Influenza A virus (A/guinea
fowl/Washington/41613-1/2014(H5N8)).

##Assembly-Data-START##
Assembly Method :: SeqMan NGen v. 4
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1744
/organism="Influenza A virus (A/guinea
fowl/Washington/41613-1/2014(H5N8))"
/mol_type="viral cRNA"
/strain="A/guinea fowl/Washington/41613-1/2014"
/serotype="H5N8"
/isolation_source="tracheal swab"
/host="guinea fowl; backyard poultry"
/db_xref="taxon:1609057"
/segment="4"
/country="USA: Douglas County, Oregon"
/collection_date="16-Dec-2014"
/note="NVSL 14-041613; EP1; Eurasian origin (EA-H5N8 clade
2.3.4.4)-related event"

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PostPosted: Sat Feb 21, 2015 5:16 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
LOCUS KP739405 1744 bp cRNA linear VRL 18-FEB-2015
DEFINITION Influenza A virus (A/chicken/Oregon/41613-2/2014(H5N8)) segment 4
hemagglutinin (HA) gene, complete cds.
ACCESSION KP739405
VERSION KP739405.1 GI:756762548
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Oregon/41613-2/2014(H5N8))
ORGANISM Influenza A virus (A/chicken/Oregon/41613-2/2014(H5N8))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1744)
AUTHORS Killian,M.L.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2015) Diagnostic Virology Laboratory, National
Veterinary Services Laboratories (NVSL), USDA, 1920 Dayton Avenue,
Ames, IA 50010, USA
COMMENT GenBank Accession Numbers KP739402-KP739409 represent sequences
from the 8 segments of Influenza A virus
(A/chicken/Oregon/41613-2/2014(H5N8)).

##Assembly-Data-START##
Assembly Method :: SeqMan NGen v. 4
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1744
/organism="Influenza A virus
(A/chicken/Oregon/41613-2/2014(H5N8))"
/mol_type="viral cRNA"
/strain="A/chicken/Oregon/41613-2/2014"
/serotype="H5N8"
/isolation_source="tracheal swab"
/host="chicken; backyard poultry"
/db_xref="taxon:1609054"
/segment="4"
/country="USA: Douglas County, Oregon"
/collection_date="16-Dec-2014"
/note="NVSL 14-041613; EP1; Eurasian origin (EA-H5N8 clade
2.3.4.4)-related event"

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PostPosted: Sat Feb 21, 2015 8:00 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/02211 ... lonal.html

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PostPosted: Mon Feb 23, 2015 12:03 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
Commentary

http://www.recombinomics.com/News/02231 ... lonal.html

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