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PostPosted: Fri Jan 09, 2015 11:59 am 
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Location: Pittsburgh, PA USA
FLI releases partial H5 sequence (at GISAID) from December 30 collection from a mallard in Saxony Anhalt.

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PostPosted: Fri Jan 09, 2015 12:00 pm 
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Posts: 56044
Location: Pittsburgh, PA USA
Isolate name:
A/mallard/Germany-ST/R23/2015
Isolate ID:
EPI_ISL_169633
Passage details/history:
original
Type:
A / H5N8
Lineage:

Sample information
Collection date:
2014-12-30
Host
Anas platyrhynchos
Additional host information:

Domestic status:
Wild
Is vaccinated:

Location:
Germany / Saxony-Anhalt
Additional location information:

Health status:

Specimen source:

Strain or commercial product name used for vaccination:

Institute information
Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:
Friedrich-Loeffler-Institut

Sample ID given by the submitting laboratory:

Authors:

Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

Publication
Publication
In vivo antiviral resistance
Phenotype
Genotype
Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:
Unknown
Oseltamivir:
Unknown
Zanamivir:
Unknown
Peramivir:
Unknown
Other:
Unknown










Additional information
Antigenic characterization:

Note:

Sequence
segment identifier length accession # INSDC Sequence

HA
A/mallard/German-ST/R23/2015
761
EPI554607

Submitter information
Submitter:
Starick, Elke
Submission Date:
2015-01-09
Last modifier:
Starick, Elke
Last modified:
2015-01-09
Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

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PostPosted: Fri Jan 09, 2015 12:01 pm 
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Posts: 56044
Location: Pittsburgh, PA USA
EPI553144 A/turkey/Italy/14VIR7898-10/2014 (A/H5N8) segment 4 (HA) 1395.3 0.000000e+00 759/761 (99%)
EPI553362 A/environment/Kagoshima/KU-ngr-H/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI553172 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI552776 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI552768 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1389.8 0.000000e+00 758/761 (99%)
EPI553349 A/wigeon/Sakha/1/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI552760 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI552746 A/turkey/Germany/R2474-L00899/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 1384.3 0.000000e+00 757/761 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 1378.7 0.000000e+00 756/761 (99%)
EPI554605 A/domestic duck/Germany-NI/R3468/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 1362.1 0.000000e+00 753/761 (98%)
EPI553145 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 1351.0 0.000000e+00 751/761 (98%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 1351.0 0.000000e+00 751/761 (98%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 1345.5 0.000000e+00 750/761 (98%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 1345.5 0.000000e+00 750/761 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 1339.9 0.000000e+00 749/761 (98%)
EPI553208 A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA) 1323.3 0.000000e+00 746/761 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 1323.3 0.000000e+00 745/761 (97%)
EPI553343 A/chicken/Miyazaki/7/2014 (A/H5N8) segment 4 (HA) 1321.5 0.000000e+00 745/760 (98%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 1284.5 0.000000e+00 741/763 (97%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 1273.5 0.000000e+00 739/763 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 1273.5 0.000000e+00 739/763 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 1273.5 0.000000e+00 739/763 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 1256.8 0.000000e+00 736/763 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 1256.8 0.000000e+00 736/763 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 1240.2 0.000000e+00 733/763 (96%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 1240.2 0.000000e+00 733/763 (96%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 1240.2 0.000000e+00 733/763 (96%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 1240.2 0.000000e+00 733/763 (96%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 1234.7 0.000000e+00 732/763 (95%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 1229.1 0.000000e+00 730/762 (95%)
EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 1223.6 0.000000e+00 730/763 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 1223.6 0.000000e+00 729/762 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 1223.6 0.000000e+00 730/763 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 1223.6 0.000000e+00 730/763 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 1223.6 0.000000e+00 731/764 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 1218.1 0.000000e+00 728/762 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 1212.5 0.000000e+00 727/762 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1207.0 0.000000e+00 726/762 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1207.0 0.000000e+00 726/762 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 1207.0 0.000000e+00 726/762 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 1207.0 0.000000e+00 726/762 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 1201.4 0.000000e+00 725/762 (95%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 1197.7 0.000000e+00 727/765 (95%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 1192.2 0.000000e+00 726/765 (94%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 1190.4 0.000000e+00 723/762 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 1184.8 0.000000e+00 725/765 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 1184.8 0.000000e+00 724/764 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 1184.8 0.000000e+00 722/762 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 1168.2 0.000000e+00 719/762 (94%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 1159.0 0.000000e+00 720/765 (94%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI406352 A/duck/Son La/34/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI180951 A/duck/Laos/25/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI167743 A/chicken/Vietnam/NCVD-42/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI167694 A/duck/Vietnam/NCVD-34/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI167633 A/Muscovy duck/Vietnam/NCVD-22/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI115053 A/chicken/Nakhonphanom/NIAH113718/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI107911 A/goose/Yunnan/1143/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 716/763 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI105547 A/human/Zhejiang/16/2006 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI105404 A/chicken/Zhejiang/24/2005 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI78021 A/chicken/Malaysia/5223/2007 (A/H5N1) segment 4 (HA) 1146.0 0.000000e+00 715/762 (93%)
EPI406392 A/chicken/Cao Bang/20/2007 (A/H5N1) segment 4 (HA) 1142.3 0.000000e+00 714/762 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI337959 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 715/763 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI180956 A/duck/Laos/22/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI164333 A/goose/Yunnan/5141/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI164258 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI108339 A/duck/Guangxi/1550/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI108331 A/goose/Guangxi/1633/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI107959 A/common magpie/Hong Kong/645/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)
EPI107853 A/chicken/Shantou/3923/2006 (A/H5N1) segment 4 (HA) 1140.5 0.000000e+00 714/762 (93%)

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PostPosted: Fri Jan 09, 2015 12:11 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI554607 A/mallard/Germany-ST/R23/2015 (A/H5N8) segment 4 (HA) 1391.6 0.000000e+00 753/753 (100%)
EPI553144 A/turkey/Italy/14VIR7898-10/2014 (A/H5N8) segment 4 (HA) 1380.6 0.000000e+00 751/753 (99%)
EPI554605 A/domestic duck/Germany-NI/R3468/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI553362 A/environment/Kagoshima/KU-ngr-H/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI553172 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI552776 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI552768 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1375.0 0.000000e+00 750/753 (99%)
EPI553349 A/wigeon/Sakha/1/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI552760 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI552746 A/turkey/Germany/R2474-L00899/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 1369.5 0.000000e+00 749/753 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 1363.9 0.000000e+00 748/753 (99%)
EPI553145 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 1347.3 0.000000e+00 745/753 (98%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 1336.2 0.000000e+00 743/753 (98%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 1336.2 0.000000e+00 743/753 (98%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 1330.7 0.000000e+00 742/753 (98%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 1330.7 0.000000e+00 742/753 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 1325.2 0.000000e+00 741/753 (98%)
EPI553343 A/chicken/Miyazaki/7/2014 (A/H5N8) segment 4 (HA) 1308.5 0.000000e+00 738/753 (98%)
EPI553208 A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA) 1308.5 0.000000e+00 738/753 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 1308.5 0.000000e+00 737/753 (97%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 1269.8 0.000000e+00 733/755 (97%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 1258.7 0.000000e+00 731/755 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 1258.7 0.000000e+00 731/755 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 1258.7 0.000000e+00 731/755 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 1242.1 0.000000e+00 728/755 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 1242.1 0.000000e+00 728/755 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 1225.4 0.000000e+00 725/755 (96%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 1225.4 0.000000e+00 725/755 (96%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 1225.4 0.000000e+00 725/755 (96%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 1225.4 0.000000e+00 725/755 (96%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 1219.9 0.000000e+00 724/755 (95%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 1214.4 0.000000e+00 722/754 (95%)
EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 1208.8 0.000000e+00 720/752 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 1208.8 0.000000e+00 721/754 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 1208.8 0.000000e+00 722/755 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 1208.8 0.000000e+00 722/755 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 1208.8 0.000000e+00 723/756 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 1203.3 0.000000e+00 720/754 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 1197.7 0.000000e+00 719/754 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1192.2 0.000000e+00 718/754 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1192.2 0.000000e+00 718/754 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 1192.2 0.000000e+00 718/754 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 1192.2 0.000000e+00 718/754 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 1186.7 0.000000e+00 717/754 (95%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 1183.0 0.000000e+00 719/757 (94%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 1177.4 0.000000e+00 718/757 (94%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 1175.6 0.000000e+00 715/754 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 1170.0 0.000000e+00 717/757 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 1170.0 0.000000e+00 716/756 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 1170.0 0.000000e+00 714/754 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 1153.4 0.000000e+00 711/754 (94%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 1144.2 0.000000e+00 712/757 (94%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI406352 A/duck/Son La/34/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI180951 A/duck/Laos/25/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI167743 A/chicken/Vietnam/NCVD-42/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI167694 A/duck/Vietnam/NCVD-34/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI167633 A/Muscovy duck/Vietnam/NCVD-22/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI115053 A/chicken/Nakhonphanom/NIAH113718/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107959 A/common magpie/Hong Kong/645/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107911 A/goose/Yunnan/1143/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 708/755 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI105547 A/human/Zhejiang/16/2006 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI105404 A/chicken/Zhejiang/24/2005 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI78021 A/chicken/Malaysia/5223/2007 (A/H5N1) segment 4 (HA) 1131.3 0.000000e+00 707/754 (93%)
EPI406392 A/chicken/Cao Bang/20/2007 (A/H5N1) segment 4 (HA) 1127.6 0.000000e+00 706/754 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI337959 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 707/755 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI180956 A/duck/Laos/22/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI164333 A/goose/Yunnan/5141/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI164258 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI108339 A/duck/Guangxi/1550/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)
EPI108331 A/goose/Guangxi/1633/2006 (A/H5N1) segment 4 (HA) 1125.7 0.000000e+00 706/754 (93%)

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PostPosted: Fri Jan 09, 2015 12:19 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 56044
Location: Pittsburgh, PA USA
EPI554607 A/mallard/Germany-ST/R23/2015 (A/H5N8) segment 4 (HA) 1371.3 0.000000e+00 742/742 (100%)
EPI553144 A/turkey/Italy/14VIR7898-10/2014 (A/H5N8) segment 4 (HA) 1360.3 0.000000e+00 740/742 (99%)
EPI554605 A/domestic duck/Germany-NI/R3468/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI553362 A/environment/Kagoshima/KU-ngr-H/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI553172 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI553145 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI552776 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI552768 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI553349 A/wigeon/Sakha/1/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI552760 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI552746 A/turkey/Germany/R2474-L00899/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 1343.6 0.000000e+00 737/742 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 1327.0 0.000000e+00 734/742 (98%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 1315.9 0.000000e+00 732/742 (98%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 1315.9 0.000000e+00 732/742 (98%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 1310.4 0.000000e+00 731/742 (98%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 1310.4 0.000000e+00 731/742 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 1304.9 0.000000e+00 730/742 (98%)
EPI553343 A/chicken/Miyazaki/7/2014 (A/H5N8) segment 4 (HA) 1288.2 0.000000e+00 727/742 (97%)
EPI553208 A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA) 1288.2 0.000000e+00 727/742 (97%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 1288.2 0.000000e+00 726/742 (97%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 1249.5 0.000000e+00 722/744 (97%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 1238.4 0.000000e+00 720/744 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 1238.4 0.000000e+00 720/744 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 1238.4 0.000000e+00 720/744 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 1221.8 0.000000e+00 717/744 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 1221.8 0.000000e+00 717/744 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 1205.1 0.000000e+00 714/744 (95%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 1205.1 0.000000e+00 714/744 (95%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 1205.1 0.000000e+00 714/744 (95%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 1205.1 0.000000e+00 714/744 (95%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 1199.6 0.000000e+00 713/744 (95%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 1194.1 0.000000e+00 711/743 (95%)
EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 1190.4 0.000000e+00 710/742 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 1188.5 0.000000e+00 710/743 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 1188.5 0.000000e+00 709/741 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 1188.5 0.000000e+00 711/744 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 1188.5 0.000000e+00 712/745 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 1183.0 0.000000e+00 709/743 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 1177.4 0.000000e+00 708/743 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1171.9 0.000000e+00 707/743 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1171.9 0.000000e+00 707/743 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 1171.9 0.000000e+00 707/743 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 1171.9 0.000000e+00 707/743 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 1166.4 0.000000e+00 706/743 (95%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 1162.7 0.000000e+00 708/746 (94%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 1160.8 0.000000e+00 705/743 (94%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 1157.1 0.000000e+00 707/746 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 1155.3 0.000000e+00 704/743 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 1149.7 0.000000e+00 706/746 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 1149.7 0.000000e+00 705/745 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 1133.1 0.000000e+00 700/743 (94%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 1123.9 0.000000e+00 701/746 (93%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI406352 A/duck/Son La/34/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI180951 A/duck/Laos/25/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI167743 A/chicken/Vietnam/NCVD-42/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI167694 A/duck/Vietnam/NCVD-34/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI167633 A/Muscovy duck/Vietnam/NCVD-22/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI115053 A/chicken/Nakhonphanom/NIAH113718/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107959 A/common magpie/Hong Kong/645/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107911 A/goose/Yunnan/1143/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 697/744 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI105547 A/human/Zhejiang/16/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI105404 A/chicken/Zhejiang/24/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI78021 A/chicken/Malaysia/5223/2007 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI406392 A/chicken/Cao Bang/20/2007 (A/H5N1) segment 4 (HA) 1107.3 0.000000e+00 695/743 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI399886 A/duck/HuBei/03/2010 (A/H5N5) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI337959 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 696/744 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI180956 A/duck/Laos/22/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI164333 A/goose/Yunnan/5141/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI164258 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)
EPI108339 A/duck/Guangxi/1550/2006 (A/H5N1) segment 4 (HA) 1105.4 0.000000e+00 695/743 (93%)

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