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Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germany
http://fluboard.rhizalabs.com/forum/viewtopic.php?f=5&t=13138
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Author:  niman [ Thu Dec 18, 2014 10:18 am ]
Post subject:  Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germany

Friedrich-Loeffler-Institut has released a partial H5 sequence from Lower Saxony turkey sample collected December 15, A/turkey/Germany-NI/R3372/2014.

Author:  niman [ Thu Dec 18, 2014 10:19 am ]
Post subject:  Re: Turkey H5N8 Sequence from Lower Saxony Germany

Isolate name:
A/turkey/Germany-NI/R3372/2014
Isolate ID:
EPI_ISL_169351
Passage details/history:
original swab
Type:
A / H5N8
Lineage:

Sample information
Collection date:
2014-12-15
Host
Turkey
Additional host information:

Domestic status:
Domestic
Is vaccinated:

Location:
Germany / Lower Saxony
Additional location information:

Health status:
Sick
Specimen source:

Strain or commercial product name used for vaccination:

Institute information
Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:
Friedrich-Loeffler-Institut

Sample ID given by the submitting laboratory:

Authors:

Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

Publication
Publication
In vivo antiviral resistance
Phenotype
Genotype
Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:
Unknown
Oseltamivir:
Unknown
Zanamivir:
Unknown
Peramivir:
Unknown
Other:
Unknown










Additional information
Antigenic characterization:

Note:

Sequence
segment identifier length accession # INSDC Sequence

HA
A/turkey/Germany-NI/R3372/2014
742
EPI553145

Submitter information
Submitter:
Starick, Elke
Submission Date:
2014-12-18
Last modifier:
Starick, Elke
Last modified:
2014-12-18
Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

Author:  niman [ Thu Dec 18, 2014 10:20 am ]
Post subject:  Re: Turkey H5N8 Sequence from Lower Saxony Germany

EPI553144 A/turkey/Italy/14VIR7898-10/2014 (A/H5N8) segment 4 (HA) 1365.8 0.000000e+00 741/742 (99%)
EPI552776 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 4 (HA) 1360.3 0.000000e+00 740/742 (99%)
EPI552768 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1360.3 0.000000e+00 740/742 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 1360.3 0.000000e+00 740/742 (99%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1360.3 0.000000e+00 740/742 (99%)
EPI552760 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 1354.7 0.000000e+00 739/742 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 1349.2 0.000000e+00 738/742 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 1332.6 0.000000e+00 735/742 (99%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 1321.5 0.000000e+00 733/742 (98%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 1321.5 0.000000e+00 733/742 (98%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 1315.9 0.000000e+00 732/742 (98%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 1315.9 0.000000e+00 732/742 (98%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 1310.4 0.000000e+00 731/742 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 1293.8 0.000000e+00 727/742 (97%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 1255.0 0.000000e+00 723/744 (97%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 1243.9 0.000000e+00 721/744 (96%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 1243.9 0.000000e+00 721/744 (96%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 1243.9 0.000000e+00 721/744 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 1227.3 0.000000e+00 718/744 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 1227.3 0.000000e+00 718/744 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 1210.7 0.000000e+00 715/744 (96%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 1210.7 0.000000e+00 715/744 (96%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 1210.7 0.000000e+00 715/744 (96%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 1210.7 0.000000e+00 715/744 (96%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 1205.1 0.000000e+00 714/744 (95%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 1199.6 0.000000e+00 712/743 (95%)
EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 1195.9 0.000000e+00 711/742 (95%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 1194.1 0.000000e+00 711/743 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 1194.1 0.000000e+00 710/741 (95%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 1194.1 0.000000e+00 712/744 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 1194.1 0.000000e+00 713/745 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 1188.5 0.000000e+00 710/743 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 1183.0 0.000000e+00 709/743 (95%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1177.4 0.000000e+00 708/743 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 1177.4 0.000000e+00 708/743 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 1177.4 0.000000e+00 708/743 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 1177.4 0.000000e+00 708/743 (95%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 1171.9 0.000000e+00 707/743 (95%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 1166.4 0.000000e+00 706/743 (95%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 1162.7 0.000000e+00 708/746 (94%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 1160.8 0.000000e+00 705/743 (94%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 1157.1 0.000000e+00 707/746 (94%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 1155.3 0.000000e+00 707/746 (94%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 1155.3 0.000000e+00 706/745 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 1138.7 0.000000e+00 701/743 (94%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 1129.4 0.000000e+00 702/746 (94%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI406352 A/duck/Son La/34/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI180951 A/duck/Laos/25/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI167743 A/chicken/Vietnam/NCVD-42/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI167694 A/duck/Vietnam/NCVD-34/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI167633 A/Muscovy duck/Vietnam/NCVD-22/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107959 A/common magpie/Hong Kong/645/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107913 A/goose/Yunnan/1144/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107911 A/goose/Yunnan/1143/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI107815 A/duck/Guiyang/497/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 698/744 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI105547 A/human/Zhejiang/16/2006 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI105404 A/chicken/Zhejiang/24/2005 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI78021 A/chicken/Malaysia/5223/2007 (A/H5N1) segment 4 (HA) 1116.5 0.000000e+00 697/743 (93%)
EPI406392 A/chicken/Cao Bang/20/2007 (A/H5N1) segment 4 (HA) 1112.8 0.000000e+00 696/743 (93%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI399886 A/duck/HuBei/03/2010 (A/H5N5) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI337959 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 697/744 (93%)
EPI270188 A/Vietnam/UT30850/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI180956 A/duck/Laos/22/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI164333 A/goose/Yunnan/5141/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI164258 A/Guangxi/1/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI164224 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI108339 A/duck/Guangxi/1550/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI108331 A/goose/Guangxi/1633/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107853 A/chicken/Shantou/3923/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107851 A/chicken/Shantou/3840/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107829 A/goose/Guiyang/1304/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107821 A/chicken/Guiyang/1018/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107805 A/chicken/Guiyang/4059/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 697/744 (93%)
EPI107803 A/duck/Guiyang/3996/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 697/744 (93%)
EPI107779 A/duck/Guangxi/744/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107771 A/chicken/Guangxi/463/2006 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)
EPI107755 A/duck/Guangxi/5270/2005 (A/H5N1) segment 4 (HA) 1111.0 0.000000e+00 696/743 (93%)

Author:  niman [ Thu Dec 18, 2014 10:42 am ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

niman wrote:
Friedrich-Loeffler-Institut has released a partial H5 sequence from Lower Saxony turkey sample collected December 15, A/turkey/Germany-NI/R3372/2014.

Full N8 sequence just released

Author:  niman [ Thu Dec 18, 2014 10:42 am ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

EPI547683 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%)
EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%)
EPI548626 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%)
EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%)
EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%)
EPI547675 A/duck/England/36254/14 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%)
EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%)
EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%)
EPI542632 A/mallard/Korea/W452/2014 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%)
EPI543012 A/duck/Beijing/CT01/2014 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%)
EPI517163 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%)
EPI551150 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1381/1385 (99%)
EPI543004 A/duck/Beijing/FS01/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%)
EPI552770 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1376/1380 (99%)
EPI552762 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI551144 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI552778 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 6 (NA) 2518.1 0.000000e+00 1375/1381 (99%)
EPI542627 A/duck/Beijing/FS01/2013 (A/H5N8) segment 6 (NA) 2466.4 0.000000e+00 1367/1385 (98%)
EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%)
EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%)
EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%)
EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1365/1394 (97%)
EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%)
EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%)
EPI485330 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 6 (NA) 2154.3 0.000000e+00 1328/1408 (94%)
EPI132266 A/duck/Eastern China/90/2004 (A/H3N8) segment 6 (NA) 2143.2 0.000000e+00 1326/1408 (94%)
EPI326921 A/environment/Korea/SH12-6/2008 (A/H3N8) segment 6 (NA) 2132.2 0.000000e+00 1323/1407 (94%)
EPI132262 A/duck/Eastern China/19/2004 (A/H3N8) segment 6 (NA) 2132.2 0.000000e+00 1324/1408 (94%)
EPI416940 A/duck/Vietnam/OIE-2577/2011 (A/H3N8) segment 6 (NA) 2087.8 0.000000e+00 1316/1408 (93%)
EPI438257 A/duck/Vietnam/G18-1/2011 (A/H3N8) segment 6 (NA) 2071.2 0.000000e+00 1313/1408 (93%)
EPI387415 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 6 (NA) 2071.2 0.000000e+00 1286/1367 (94%)
EPI326920 A/environment/Korea/SH12-8/2008 (A/H3N8) segment 6 (NA) 2052.7 0.000000e+00 1280/1364 (93%)
EPI387510 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 6 (NA) 2049.1 0.000000e+00 1282/1367 (93%)
EPI387494 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 6 (NA) 2043.5 0.000000e+00 1281/1367 (93%)
EPI363489 A/duck/Guangxi/2736/2006 (A/H6N8) segment 6 (NA) 2038.0 0.000000e+00 1307/1408 (92%)
EPI485320 A/ruddy shelduck/Mongolia/1787/2011 (A/H3N8) segment 6 (NA) 1980.7 0.000000e+00 1287/1391 (92%)
EPI485328 A/common shelduck/Mongolia/2076/2011 (A/H3N8) segment 6 (NA) 1860.7 0.000000e+00 1258/1380 (91%)
EPI128912 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1755.4 0.000000e+00 1263/1415 (89%)
EPI407886 A/duck/Ukraine/1963 (A/H3N8) segment 6 (NA) 1749.9 0.000000e+00 1263/1416 (89%)
EPI42182 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1749.9 0.000000e+00 1263/1416 (89%)
EPI3107 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1744.4 0.000000e+00 1262/1416 (89%)
EPI132460 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1738.8 0.000000e+00 1261/1416 (89%)
EPI251642 A/mallard/Netherlands/10/1999 (A/H1N8) segment 6 (NA) 1707.4 0.000000e+00 1212/1353 (89%)
EPI128904 A/duck/Burjatia/652/1988 (A/H3N8) segment 6 (NA) 1677.9 0.000000e+00 1251/1417 (88%)
EPI339175 A/mallard/Germany-BY/R1353/2010 (A/H6N8) segment 6 (NA) 1666.8 0.000000e+00 1243/1411 (88%)
EPI316762 A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 6 (NA) 1666.8 0.000000e+00 1243/1411 (88%)
EPI182043 A/common eider/Netherlands/1/2006 (A/H3N8) segment 6 (NA) 1666.8 0.000000e+00 1247/1415 (88%)
EPI2999 A/duck/Hong Kong/438/1977 (A/H4N8) segment 6 (NA) 1666.8 0.000000e+00 1247/1415 (88%)
EPI339174 A/goose/Germany/R1767/2007 (A/H6N8) segment 6 (NA) 1661.3 0.000000e+00 1243/1412 (88%)
EPI316502 A/duck/Hubei/126/1985 (A/H7N8) segment 6 (NA) 1661.3 0.000000e+00 1249/1418 (88%)
EPI268303 A/duck/Hunan/3748/2004 (A/H6N8) segment 6 (NA) 1661.3 0.000000e+00 1243/1412 (88%)
EPI251715 A/mallard/Sweden/45/2002 (A/H11N8) segment 6 (NA) 1661.3 0.000000e+00 1245/1414 (88%)
EPI398948 A/mallard/Norway/10_779/2009 (A/H3N8) segment 6 (NA) 1655.7 0.000000e+00 1245/1415 (87%)
EPI372503 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 6 (NA) 1655.7 0.000000e+00 1243/1413 (87%)
EPI336006 A/teal/Chany/444/2009 (A/H8N8) segment 6 (NA) 1655.7 0.000000e+00 1245/1415 (87%)
EPI314410 A/mallard/Czech Republic/14516/2007 (A/H3N8) segment 6 (NA) 1655.7 0.000000e+00 1242/1412 (87%)
EPI397605 A/duck/Germany-NW/R2185/2006 (A/H6N8) segment 6 (NA) 1650.2 0.000000e+00 1246/1417 (87%)
EPI310343 A/duck/Zambia/04/2008 (A/H3N8) segment 6 (NA) 1650.2 0.000000e+00 1243/1414 (87%)
EPI235185 A/Mallard/65112/03 (A/H3N8) segment 6 (NA) 1650.2 0.000000e+00 1243/1414 (87%)
EPI182115 A/mallard/Netherlands/33/2006 (A/H7N8) segment 6 (NA) 1650.2 0.000000e+00 1244/1415 (87%)
EPI182083 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 6 (NA) 1650.2 0.000000e+00 1242/1413 (87%)
EPI182075 A/common teal/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1650.2 0.000000e+00 1242/1413 (87%)
EPI182051 A/turnstone/Netherlands/1/2007 (A/H3N8) segment 6 (NA) 1650.2 0.000000e+00 1244/1415 (87%)
EPI268302 A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 6 (NA) 1646.5 0.000000e+00 1241/1412 (87%)
EPI268301 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 6 (NA) 1646.5 0.000000e+00 1241/1412 (87%)
EPI296538 A/mallard/Netherlands/20/2005 (A/H12N8) segment 6 (NA) 1644.6 0.000000e+00 1242/1414 (87%)
EPI296491 A/common eider/Netherlands2/2006 (A/H4N8) segment 6 (NA) 1644.6 0.000000e+00 1242/1414 (87%)
EPI169324 A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 6 (NA) 1644.6 0.000000e+00 1241/1413 (87%)
EPI14499 A/duck/Spain/543/2006 (A/H6N8) segment 6 (NA) 1644.6 0.000000e+00 1241/1413 (87%)
EPI398924 A/common gull/Norway/10_1602/2009 (A/H6N8) segment 6 (NA) 1639.1 0.000000e+00 1241/1414 (87%)
EPI339172 A/mallard/Germany-BE/R663/08 (A/H3N8) segment 6 (NA) 1639.1 0.000000e+00 1241/1414 (87%)
EPI221959 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1639.1 0.000000e+00 1241/1414 (87%)
EPI408014 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1240/1414 (87%)
EPI234646 A/duck/Beijing/40/04 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1240/1414 (87%)
EPI222081 A/gadwall/Altai/1328/2007 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1239/1413 (87%)
EPI222073 A/gadwall/Altai/1326/2007 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1239/1413 (87%)
EPI222065 A/gadwall/Altai/1325/2007 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1239/1413 (87%)
EPI184026 A/mallard/Hungary/19616/2007 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1240/1414 (87%)
EPI42316 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1633.6 0.000000e+00 1240/1414 (87%)
EPI13715 A/duck/Norway/1/03 (A/H3N8) segment 6 (NA) 1631.7 0.000000e+00 1238/1413 (87%)
EPI367575 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 6 (NA) 1628.0 0.000000e+00 1240/1415 (87%)
EPI356301 A/Greater white-fronted goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI302179 A/Greater White-Fronted Goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI222057 A/gadwall/Altai/1324/2007 (A/H3N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI221967 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI221951 A/water/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI105959 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1628.0 0.000000e+00 1239/1414 (87%)
EPI14495 A/duck/Spain/539/2006 (A/H6N8) segment 6 (NA) 1628.0 0.000000e+00 1238/1413 (87%)
EPI251736 A/mallard/Sweden/50/2002 (A/H3N8) segment 6 (NA) 1622.5 0.000000e+00 1216/1381 (88%)
EPI232400 A/duck/Beijing/61/05 (A/H3N8) segment 6 (NA) 1622.5 0.000000e+00 1238/1414 (87%)
EPI190374 A/mallard/Netherlands/17/2007 (A/H11N8) segment 6 (NA) 1622.5 0.000000e+00 1238/1414 (87%)
EPI181955 A/mallard/Netherlands/3/2005 (A/H3N8) segment 6 (NA) 1622.5 0.000000e+00 1237/1413 (87%)
EPI174847 A/duck/Denmark/75-65472-P34/2003 (A/H3N8) segment 6 (NA) 1622.5 0.000000e+00 1237/1413 (87%)
EPI2277 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1622.5 0.000000e+00 1239/1415 (87%)
EPI345774 A/duck/Eastern China/50/2002 (A/H6N8) segment 6 (NA) 1616.9 0.000000e+00 1238/1415 (87%)
EPI221975 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1616.9 0.000000e+00 1237/1414 (87%)
EPI132438 A/duck/Eastern China/163/2002 (A/H6N8) segment 6 (NA) 1616.9 0.000000e+00 1237/1414 (87%)
EPI128908 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1616.9 0.000000e+00 1239/1416 (87%)
EPI106660 A/wild bird feces/Korea/ES1-9/03 (A/H10N8) segment 6 (NA) 1616.9 0.000000e+00 1228/1400 (87%)
EPI106656 A/wild bird feces/Korea/ES1-17/03 (A/H10N8) segment 6 (NA) 1616.9 0.000000e+00 1228/1400 (87%)

Author:  niman [ Thu Dec 18, 2014 10:51 am ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

Isolate name:
A/turkey/Germany-NI/R3372/2014
Isolate ID:
EPI_ISL_169351
Passage details/history:
original swab
Type:
A / H5N8
Lineage:

Sample information
Collection date:
2014-12-15
Host
Turkey
Additional host information:

Domestic status:
Domestic
Is vaccinated:

Location:
Germany / Lower Saxony
Additional location information:

Health status:
Sick
Specimen source:

Strain or commercial product name used for vaccination:

Institute information
Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:
Friedrich-Loeffler-Institut

Sample ID given by the submitting laboratory:

Authors:

Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

Publication
Publication
In vivo antiviral resistance
Phenotype
Genotype
Unspecified
Antiviral resistance tested by experimental procedures
Adamantanes:
Unknown
Oseltamivir:
Unknown
Zanamivir:
Unknown
Peramivir:
Unknown
Other:
Unknown










Additional information
Antigenic characterization:

Note:

Sequence
segment identifier length accession # INSDC Sequence

HA
A/turkey/Germany-NI/R3372/2014
742
EPI553145


NA
A/turkey/Germany-NI/R3372/2014
1422
EPI553152

Submitter information
Submitter:
Starick, Elke
Submission Date:
2014-12-18
Last modifier:
Starick, Elke
Last modified:
2014-12-18
Address:
Friedrich-Loeffler-Institut
Suedufer 10
17493 Greifswald-Insel Riems
Germany

Author:  niman [ Thu Dec 18, 2014 11:43 am ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

EPI553152 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1377/1377 (100%)
EPI552770 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI552762 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI551150 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI551144 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI547683 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1373/1377 (99%)
EPI548626 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1372/1377 (99%)
EPI552778 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1371/1377 (99%)
EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1371/1377 (99%)
EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1371/1377 (99%)
EPI547675 A/duck/England/36254/14 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1371/1377 (99%)
EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2505.2 0.000000e+00 1370/1377 (99%)
EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2505.2 0.000000e+00 1370/1377 (99%)
EPI542632 A/mallard/Korea/W452/2014 (A/H5N8) segment 6 (NA) 2494.1 0.000000e+00 1368/1377 (99%)
EPI543012 A/duck/Beijing/CT01/2014 (A/H5N8) segment 6 (NA) 2488.6 0.000000e+00 1367/1377 (99%)
EPI517163 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 6 (NA) 2488.6 0.000000e+00 1367/1377 (99%)
EPI543004 A/duck/Beijing/FS01/2014 (A/H5N8) segment 6 (NA) 2483.0 0.000000e+00 1366/1377 (99%)
EPI542627 A/duck/Beijing/FS01/2013 (A/H5N8) segment 6 (NA) 2435.0 0.000000e+00 1350/1368 (98%)
EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2383.3 0.000000e+00 1348/1377 (97%)
EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2366.7 0.000000e+00 1345/1377 (97%)
EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2366.7 0.000000e+00 1345/1377 (97%)
EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2361.1 0.000000e+00 1344/1377 (97%)
EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2355.6 0.000000e+00 1343/1377 (97%)
EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2355.6 0.000000e+00 1343/1377 (97%)
EPI485330 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 6 (NA) 2100.8 0.000000e+00 1299/1379 (94%)
EPI132266 A/duck/Eastern China/90/2004 (A/H3N8) segment 6 (NA) 2089.7 0.000000e+00 1297/1379 (94%)
EPI326921 A/environment/Korea/SH12-6/2008 (A/H3N8) segment 6 (NA) 2078.6 0.000000e+00 1294/1378 (93%)
EPI132262 A/duck/Eastern China/19/2004 (A/H3N8) segment 6 (NA) 2078.6 0.000000e+00 1295/1379 (93%)
EPI326920 A/environment/Korea/SH12-8/2008 (A/H3N8) segment 6 (NA) 2045.4 0.000000e+00 1276/1360 (93%)
EPI416940 A/duck/Vietnam/OIE-2577/2011 (A/H3N8) segment 6 (NA) 2039.8 0.000000e+00 1288/1379 (93%)
EPI387415 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 6 (NA) 2039.8 0.000000e+00 1266/1346 (94%)
EPI438257 A/duck/Vietnam/G18-1/2011 (A/H3N8) segment 6 (NA) 2023.2 0.000000e+00 1285/1379 (93%)
EPI387510 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 6 (NA) 2017.7 0.000000e+00 1262/1346 (93%)
EPI387494 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 6 (NA) 2012.1 0.000000e+00 1261/1346 (93%)
EPI363489 A/duck/Guangxi/2736/2006 (A/H6N8) segment 6 (NA) 1984.4 0.000000e+00 1278/1379 (92%)
EPI485320 A/ruddy shelduck/Mongolia/1787/2011 (A/H3N8) segment 6 (NA) 1927.2 0.000000e+00 1258/1362 (92%)
EPI485328 A/common shelduck/Mongolia/2076/2011 (A/H3N8) segment 6 (NA) 1807.1 0.000000e+00 1229/1351 (90%)
EPI128912 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1701.9 0.000000e+00 1234/1386 (89%)
EPI407886 A/duck/Ukraine/1963 (A/H3N8) segment 6 (NA) 1696.3 0.000000e+00 1234/1387 (88%)
EPI42182 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1696.3 0.000000e+00 1234/1387 (88%)
EPI3107 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1690.8 0.000000e+00 1233/1387 (88%)
EPI251642 A/mallard/Netherlands/10/1999 (A/H1N8) segment 6 (NA) 1685.3 0.000000e+00 1197/1337 (89%)
EPI132460 A/duck/Ukraine/1/1963 (A/H3N8) segment 6 (NA) 1685.3 0.000000e+00 1232/1387 (88%)
EPI128904 A/duck/Burjatia/652/1988 (A/H3N8) segment 6 (NA) 1624.3 0.000000e+00 1222/1388 (88%)
EPI339175 A/mallard/Germany-BY/R1353/2010 (A/H6N8) segment 6 (NA) 1618.8 0.000000e+00 1215/1382 (87%)
EPI316762 A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 6 (NA) 1613.2 0.000000e+00 1214/1382 (87%)
EPI182043 A/common eider/Netherlands/1/2006 (A/H3N8) segment 6 (NA) 1613.2 0.000000e+00 1218/1386 (87%)
EPI2999 A/duck/Hong Kong/438/1977 (A/H4N8) segment 6 (NA) 1613.2 0.000000e+00 1218/1386 (87%)
EPI339174 A/goose/Germany/R1767/2007 (A/H6N8) segment 6 (NA) 1607.7 0.000000e+00 1214/1383 (87%)
EPI316502 A/duck/Hubei/126/1985 (A/H7N8) segment 6 (NA) 1607.7 0.000000e+00 1220/1389 (87%)
EPI268303 A/duck/Hunan/3748/2004 (A/H6N8) segment 6 (NA) 1607.7 0.000000e+00 1214/1383 (87%)
EPI251715 A/mallard/Sweden/45/2002 (A/H11N8) segment 6 (NA) 1607.7 0.000000e+00 1216/1385 (87%)
EPI398948 A/mallard/Norway/10_779/2009 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1216/1386 (87%)
EPI372503 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1214/1384 (87%)
EPI336006 A/teal/Chany/444/2009 (A/H8N8) segment 6 (NA) 1602.2 0.000000e+00 1216/1386 (87%)
EPI314410 A/mallard/Czech Republic/14516/2007 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1213/1383 (87%)
EPI310343 A/duck/Zambia/04/2008 (A/H3N8) segment 6 (NA) 1602.2 0.000000e+00 1215/1385 (87%)
EPI268302 A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1215/1385 (87%)
EPI268301 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 6 (NA) 1602.2 0.000000e+00 1215/1385 (87%)
EPI439277 A/common teal/Georgia/1/2011 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1199/1362 (88%)
EPI397605 A/duck/Germany-NW/R2185/2006 (A/H6N8) segment 6 (NA) 1596.6 0.000000e+00 1217/1388 (87%)
EPI235185 A/Mallard/65112/03 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1214/1385 (87%)
EPI182115 A/mallard/Netherlands/33/2006 (A/H7N8) segment 6 (NA) 1596.6 0.000000e+00 1215/1386 (87%)
EPI182083 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 6 (NA) 1596.6 0.000000e+00 1213/1384 (87%)
EPI182075 A/common teal/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1596.6 0.000000e+00 1213/1384 (87%)
EPI182051 A/turnstone/Netherlands/1/2007 (A/H3N8) segment 6 (NA) 1596.6 0.000000e+00 1215/1386 (87%)
EPI296538 A/mallard/Netherlands/20/2005 (A/H12N8) segment 6 (NA) 1591.1 0.000000e+00 1213/1385 (87%)
EPI296491 A/common eider/Netherlands2/2006 (A/H4N8) segment 6 (NA) 1591.1 0.000000e+00 1213/1385 (87%)
EPI169324 A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI14499 A/duck/Spain/543/2006 (A/H6N8) segment 6 (NA) 1591.1 0.000000e+00 1212/1384 (87%)
EPI398924 A/common gull/Norway/10_1602/2009 (A/H6N8) segment 6 (NA) 1585.5 0.000000e+00 1212/1385 (87%)
EPI339172 A/mallard/Germany-BE/R663/08 (A/H3N8) segment 6 (NA) 1585.5 0.000000e+00 1212/1385 (87%)
EPI221959 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1585.5 0.000000e+00 1212/1385 (87%)
EPI408014 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI345774 A/duck/Eastern China/50/2002 (A/H6N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI234646 A/duck/Beijing/40/04 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI222081 A/gadwall/Altai/1328/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI222073 A/gadwall/Altai/1326/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI222065 A/gadwall/Altai/1325/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1210/1384 (87%)
EPI184026 A/mallard/Hungary/19616/2007 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI42316 A/duck/Chabarovsk/1610/1972 (A/H3N8) segment 6 (NA) 1580.0 0.000000e+00 1211/1385 (87%)
EPI367575 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1211/1386 (87%)
EPI356301 A/Greater white-fronted goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI302179 A/Greater White-Fronted Goose/Germany-NW/R02/2009 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI222057 A/gadwall/Altai/1324/2007 (A/H3N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI221967 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI221951 A/water/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI105959 A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1210/1385 (87%)
EPI14495 A/duck/Spain/539/2006 (A/H6N8) segment 6 (NA) 1574.5 0.000000e+00 1209/1384 (87%)
EPI251736 A/mallard/Sweden/50/2002 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1187/1352 (87%)
EPI232400 A/duck/Beijing/61/05 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI190374 A/mallard/Netherlands/17/2007 (A/H11N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI181955 A/mallard/Netherlands/3/2005 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1208/1384 (87%)
EPI132438 A/duck/Eastern China/163/2002 (A/H6N8) segment 6 (NA) 1568.9 0.000000e+00 1209/1385 (87%)
EPI2443 A/duck/Hokkaido/10/1985 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1210/1386 (87%)
EPI2277 A/Duck/Hokkaido/8/80 (A/H3N8) segment 6 (NA) 1568.9 0.000000e+00 1210/1386 (87%)
EPI251795 A/mallard/Sweden/7/2003 (A/H10N8) segment 6 (NA) 1563.4 0.000000e+00 1137/1281 (88%)
EPI236671 A/duck/Siberia/100/2001 (A/H3N8) segment 6 (NA) 1563.4 0.000000e+00 1208/1385 (87%)
EPI221975 A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 6 (NA) 1563.4 0.000000e+00 1208/1385 (87%)

Author:  niman [ Fri Dec 19, 2014 9:03 pm ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

EPI553172 A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 4 (HA) 2479.3 0.000000e+00 1342/1342 (100%)
EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 2457.2 0.000000e+00 1338/1342 (99%)
EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 2457.2 0.000000e+00 1338/1342 (99%)
EPI548623 A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 4 (HA) 2451.6 0.000000e+00 1337/1342 (99%)
EPI544756 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 4 (HA) 2451.6 0.000000e+00 1337/1342 (99%)
EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 2446.1 0.000000e+00 1336/1342 (99%)
EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 2446.1 0.000000e+00 1336/1342 (99%)
EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 2435.0 0.000000e+00 1334/1342 (99%)
EPI552768 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 2427.6 0.000000e+00 1325/1330 (99%)
EPI552760 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 2423.9 0.000000e+00 1320/1324 (99%)
EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 2423.9 0.000000e+00 1332/1342 (99%)
EPI551149 A/eurasian wigeon/Netherlands/emc-2/2014 (A/H5N8) segment 4 (HA) 2422.1 0.000000e+00 1319/1323 (99%)
EPI552776 A/chicken/Netherlands/emc-3/2014 (A/H5N8) segment 4 (HA) 2407.3 0.000000e+00 1317/1324 (99%)
EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 2407.3 0.000000e+00 1329/1342 (99%)
EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 2398.1 0.000000e+00 1322/1334 (99%)
EPI553144 A/turkey/Italy/14VIR7898-10/2014 (A/H5N8) segment 4 (HA) 2353.8 0.000000e+00 1279/1282 (99%)
EPI551143 A/eurasian wigeon/Netherlands/emc-1/2014 (A/H5N8) segment 4 (HA) 2309.4 0.000000e+00 1256/1259 (99%)
EPI543010 A/duck/Beijing/CT01/2014 (A/H5N8) segment 4 (HA) 2292.8 0.000000e+00 1271/1286 (98%)
EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2279.9 0.000000e+00 1308/1344 (97%)
EPI543002 A/duck/Beijing/FS01/2014 (A/H5N8) segment 4 (HA) 2276.2 0.000000e+00 1269/1287 (98%)
EPI542617 A/duck/Beijing/FS01/2013 (A/H5N8) segment 4 (HA) 2276.2 0.000000e+00 1267/1286 (98%)
EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2274.3 0.000000e+00 1307/1344 (97%)
EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2268.8 0.000000e+00 1306/1344 (97%)
EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2237.4 0.000000e+00 1295/1336 (96%)
EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2235.6 0.000000e+00 1300/1344 (96%)
EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2220.8 0.000000e+00 1292/1336 (96%)
EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2207.9 0.000000e+00 1295/1344 (96%)
EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2202.3 0.000000e+00 1294/1344 (96%)
EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2193.1 0.000000e+00 1292/1344 (96%)
EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2187.6 0.000000e+00 1286/1336 (96%)
EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2182.0 0.000000e+00 1287/1338 (96%)
EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2180.2 0.000000e+00 1291/1345 (95%)
EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2180.2 0.000000e+00 1291/1345 (95%)
EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2176.5 0.000000e+00 1284/1336 (96%)
EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2176.5 0.000000e+00 1285/1337 (96%)
EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2176.5 0.000000e+00 1284/1336 (96%)
EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2174.6 0.000000e+00 1290/1345 (95%)
EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2174.6 0.000000e+00 1290/1345 (95%)
EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 2174.6 0.000000e+00 1290/1345 (95%)
EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 2174.6 0.000000e+00 1290/1345 (95%)
EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2170.9 0.000000e+00 1283/1336 (96%)
EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 2169.1 0.000000e+00 1289/1345 (95%)
EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 2154.3 0.000000e+00 1281/1337 (95%)
EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2146.9 0.000000e+00 1283/1343 (95%)
EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 2121.1 0.000000e+00 1281/1346 (95%)
EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 2119.2 0.000000e+00 1282/1347 (95%)
EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 2119.2 0.000000e+00 1278/1343 (95%)
EPI442025 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 4 (HA) 2115.5 0.000000e+00 1280/1346 (95%)
EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 2098.9 0.000000e+00 1272/1338 (95%)
EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 2098.9 0.000000e+00 1269/1335 (95%)
EPI442009 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 4 (HA) 2076.8 0.000000e+00 1274/1347 (94%)
EPI442001 A/goose/Shandong/k1204/2009 (A/H5N5) segment 4 (HA) 2069.4 0.000000e+00 1270/1344 (94%)
EPI127384 A/wild duck/Hunan/021/2005 (A/H5N1) segment 4 (HA) 2030.6 0.000000e+00 1262/1343 (93%)
EPI127406 A/wild duck/Hunan/211/2005 (A/H5N1) segment 4 (HA) 2025.0 0.000000e+00 1261/1343 (93%)
EPI399886 A/duck/HuBei/03/2010 (A/H5N5) segment 4 (HA) 2014.0 0.000000e+00 1260/1344 (93%)
EPI337076 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 2014.0 0.000000e+00 1259/1343 (93%)
EPI279949 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 2014.0 0.000000e+00 1259/1343 (93%)
EPI275982 A/duck/Hubei/49/2005 (A/H5N1) segment 4 (HA) 2014.0 0.000000e+00 1260/1344 (93%)
EPI227309 A/Mallard/Huadong/lk/2005 (A/H5N1) segment 4 (HA) 2010.3 0.000000e+00 1253/1335 (93%)
EPI164333 A/goose/Yunnan/5141/2006 (A/H5N1) segment 4 (HA) 2010.3 0.000000e+00 1257/1341 (93%)
EPI107863 A/duck/Hunan/344/2006 (A/H5N1) segment 4 (HA) 2010.3 0.000000e+00 1247/1326 (94%)
EPI107861 A/duck/Hunan/324/2006 (A/H5N1) segment 4 (HA) 2010.3 0.000000e+00 1247/1326 (94%)
EPI439897 A/goose/Guangdong/08/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1253/1335 (93%)
EPI286383 A/chicken/Cao Bang/07-42/2007 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1259/1344 (93%)
EPI286381 A/chicken/Nam Dinh/07-32/2007 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1259/1344 (93%)
EPI280104 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI276046 A/goose/Hubei/65/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI275386 A/Anhui/2/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1259/1344 (93%)
EPI224777 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI170615 A/chicken/Vietnam/216/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI170607 A/Muscovy duck/Vietnam/217/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI170599 A/duck/Vietnam/218/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI170591 A/duck/Vietnam/219/2005 (A/H5N1) segment 4 (HA) 2008.4 0.000000e+00 1258/1343 (93%)
EPI275966 A/duck/Anhui/56/2005 (A/H5N1) segment 4 (HA) 2004.7 0.000000e+00 1252/1335 (93%)
EPI107769 A/duck/Guangxi/288/2006 (A/H5N1) segment 4 (HA) 2004.7 0.000000e+00 1246/1326 (93%)
EPI105404 A/chicken/Zhejiang/24/2005 (A/H5N1) segment 4 (HA) 2004.7 0.000000e+00 1252/1335 (93%)
EPI337107 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI280112 A/Shanghai/1/2006 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI275870 A/chicken/Sichuan/81/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI227371 A/muscovy duck/VietNam/209/2005 (A/H5) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI227010 A/chicken/Ninh Binh/209/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170742 A/duck/Vietnam/215/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170741 A/Muscovy duck/Vietnam/213/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170739 A/Muscovy duck/Vietnam/211/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170738 A/duck/Vietnam/210/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170714 A/chicken/Vietnam/202/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170690 A/duck/Vietnam/205/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170674 A/duck/Vietnam/207/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI170658 A/chicken/Vietnam/209/2005 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1257/1343 (93%)
EPI115053 A/chicken/Nakhonphanom/NIAH113718/2006 (A/H5N1) segment 4 (HA) 2002.9 0.000000e+00 1258/1344 (93%)
EPI406406 A/Muscovy duck/Ca Mau/22/2007 (A/H5N1) segment 4 (HA) 1999.2 0.000000e+00 1252/1336 (93%)
EPI181297 A/Zhejiang/1/2006 (A/H5N1) segment 4 (HA) 1999.2 0.000000e+00 1251/1335 (93%)
EPI164232 A/Sichuan/2/2006 (A/H5N1) segment 4 (HA) 1999.2 0.000000e+00 1251/1335 (93%)
EPI107771 A/chicken/Guangxi/463/2006 (A/H5N1) segment 4 (HA) 1999.2 0.000000e+00 1245/1326 (93%)
EPI280096 A/Hunan/1/2006 (A/H5N1) segment 4 (HA) 1997.3 0.000000e+00 1256/1343 (93%)
EPI225081 A/duck/Hai Phong /208/2006 (A/H5N1) segment 4 (HA) 1997.3 0.000000e+00 1256/1343 (93%)
EPI170666 A/duck/Vietnam/208/2005 (A/H5N1) segment 4 (HA) 1997.3 0.000000e+00 1256/1343 (93%)
EPI106026 A/China/GD01/2006 (A/H5N1) segment 4 (HA) 1997.3 0.000000e+00 1256/1343 (93%)
EPI181301 A/Guangdong/1/2006 (A/H5N1) segment 4 (HA) 1993.7 0.000000e+00 1250/1335 (93%)
EPI181298 A/Sichuan/1/2006 (A/H5N1) segment 4 (HA) 1993.7 0.000000e+00 1250/1335 (93%)

Author:  niman [ Sat Dec 20, 2014 1:52 pm ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

Thread on H5N8 in Emsland

viewtopic.php?f=5&t=13147

Author:  niman [ Sat Dec 20, 2014 1:53 pm ]
Post subject:  Re: Turkey H5N8 Sequence from Cloppenburg Lower Saxony Germa

Thread on H5N8 in Aken mallard

viewtopic.php?f=5&t=13155

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