Rhiza Labs FluTracker Forum

Top 100 Genbank matches

JQ983362.1 Influenza A virus (A/ostrich/Egypt/11139F/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2300 2300 100% 0.0 100%
JQ983352.1 Influenza A virus (A/goose/Egypt/1117SF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2282 2282 100% 0.0 99%
JQ983351.1 Influenza A virus (A/duck/Egypt/1113SD/2011(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2277 2277 100% 0.0 99%
JN582044.1 Influenza A virus (A/turkey/Jenin/341/2011(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2277 2277 100% 0.0 99%
JQ983361.1 Influenza A virus (A/chicken/Egypt/1155/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2273 2273 100% 0.0 99%
JQ983350.1 Influenza A virus (A/chicken/Egypt/1113/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2269 2269 99% 0.0 99%
JQ983360.1 Influenza A virus (A/duck/Egypt/11106SF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2268 2268 100% 0.0 99%
JQ983355.1 Influenza A virus (A/duck/Egypt/1148SF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2268 2268 100% 0.0 99%
JN600466.1 Influenza A virus (A/harrier/Israel/531/2011(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2264 2264 100% 0.0 99%
CY062461.1 Influenza A virus (A/Egypt/N14604/2009(H5N1)) segment 6 sequence 2264 2264 100% 0.0 99%
JQ983365.1 Influenza A virus (A/quail/Egypt/1171SG/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2259 2259 100% 0.0 99%
JQ983356.1 Influenza A virus (A/chicken/Egypt/1158SF/2011(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2259 2259 100% 0.0 99%
JQ983354.1 Influenza A virus (A/chicken/Egypt/112AF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2259 2259 100% 0.0 99%
JQ983366.1 Influenza A virus (A/chicken/Egypt/1119AF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2255 2255 100% 0.0 99%
JQ983349.1 Influenza A virus (A/chicken/Egypt/1112/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2250 2250 99% 0.0 99%
CY062477.1 Influenza A virus (A/Egypt/N02127/2010(H5N1)) segment 6 sequence 2250 2250 100% 0.0 99%
CY062473.1 Influenza A virus (A/Egypt/N01982/2010(H5N1)) segment 6 sequence 2250 2250 100% 0.0 99%
CY062456.1 Influenza A virus (A/Egypt/N09174/2009(H5N1)) segment 6 sequence 2250 2250 100% 0.0 99%
CY062446.1 Influenza A virus (A/Egypt/N05049/2009(H5N1)) segment 6 sequence 2241 2241 100% 0.0 99%
HQ908486.1 Influenza A virus (A/chicken/Egypt/10189s/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2237 2237 100% 0.0 99%
HQ908481.1 Influenza A virus (A/duck/Egypt/1011d/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2237 2237 100% 0.0 99%
HQ908475.1 Influenza A virus (A/chicken/Egypt/1034/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2237 2237 100% 0.0 99%
JQ983363.1 Influenza A virus (A/chicken/Egypt/1118AF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2235 2235 98% 0.0 99%
CY062481.1 Influenza A virus (A/Egypt/N02770/2010(H5N1)) segment 6 sequence 2232 2232 100% 0.0 99%
HQ908472.1 Influenza A virus (A/duck/Egypt/09184SM-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2228 2228 100% 0.0 99%
CY062467.1 Influenza A virus (A/Egypt/N00270/2010(H5N1)) segment 6 sequence 2228 2228 100% 0.0 99%
CY062454.1 Influenza A virus (A/Egypt/N08835/2009(H5N1)) segment 6 sequence 2228 2228 100% 0.0 99%
CY062452.1 Influenza A virus (A/Egypt/N07908/2009(H5N1)) segment 6 sequence 2228 2228 100% 0.0 99%
CY041911.1 Influenza A virus (A/Egypt/N00585/2009(H5N1)) segment 6 sequence 2228 2228 100% 0.0 99%
JQ983353.1 Influenza A virus (A/duck/Egypt/1123SF/2011(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2224 2224 99% 0.0 99%
CY041923.1 Influenza A virus (A/Egypt/N02563/2009(H5N1)) segment 6 sequence 2223 2223 100% 0.0 99%
CY041921.1 Influenza A virus (A/Egypt/N02407/2009(H5N1)) segment 6 sequence 2223 2223 100% 0.0 99%
CY041909.1 Influenza A virus (A/Egypt/N00001/2009(H5N1)) segment 6 sequence 2223 2223 100% 0.0 99%
HQ908458.1 Influenza A virus (A/duck/Egypt/0972-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2219 2219 100% 0.0 99%
HM352795.1 Influenza A virus (A/duck/Egypt/0984smf-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2219 2219 100% 0.0 99%
HM352793.1 Influenza A virus (A/goose/Egypt/09324sm-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2219 2219 100% 0.0 99%
CY062483.1 Influenza A virus (A/Egypt/N03071/2010(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY062479.1 Influenza A virus (A/Egypt/N02554/2010(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY062475.1 Influenza A virus (A/Egypt/N02038/2010(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY041944.1 Influenza A virus (A/Egypt/N04396/2009(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY041939.1 Influenza A virus (A/Egypt/N04316/2009(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY041935.1 Influenza A virus (A/Egypt/N03439/2009(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY041929.1 Influenza A virus (A/Egypt/N03272/2009(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
CY041927.1 Influenza A virus (A/Egypt/N03228/2009(H5N1)) segment 6 sequence 2219 2219 100% 0.0 99%
GQ184281.1 Influenza A virus (A/chicken/Egypt/0894-NLQP/2008(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2219 2219 100% 0.0 99%
HQ908476.1 Influenza A virus (A/chicken/Egypt/1035/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2214 2214 98% 0.0 99%
CY062463.1 Influenza A virus (A/Egypt/N15262/2009(H5N1)) segment 6 sequence 2214 2214 100% 0.0 99%
CY041942.1 Influenza A virus (A/Egypt/N04395/2009(H5N1)) segment 6 sequence 2214 2214 100% 0.0 99%
CY041917.1 Influenza A virus (A/Egypt/N01310/2009(H5N1)) segment 6 sequence 2214 2214 100% 0.0 99%
CY041913.1 Influenza A virus (A/Egypt/N00605/2009(H5N1)) segment 6 sequence 2214 2214 100% 0.0 99%
HQ908461.1 Influenza A virus (A/chicken/Egypt/0987-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2210 2210 100% 0.0 98%
HM352792.1 Influenza A virus (A/duck/Egypt/0990SM-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2210 2210 100% 0.0 98%
CY062485.1 Influenza A virus (A/Egypt/N03072/2010(H5N1)) segment 6 sequence 2210 2210 100% 0.0 98%
CY062448.1 Influenza A virus (A/Egypt/N05912/2009(H5N1)) segment 6 sequence 2210 2210 99% 0.0 99%
CY041919.1 Influenza A virus (A/Egypt/N02039/2009(H5N1)) segment 6 sequence 2210 2210 100% 0.0 98%
CY041952.1 Influenza A virus (A/Egypt/N04823/2009(H5N1)) segment 6 sequence 2205 2205 100% 0.0 98%
CY062487.1 Influenza A virus (A/Egypt/N04434/2010(H5N1)) segment 6 sequence 2201 2201 100% 0.0 98%
CY062471.1 Influenza A virus (A/Egypt/N01644/2010(H5N1)) segment 6 sequence 2201 2201 100% 0.0 98%
FJ461639.1 Influenza A virus (A/Egypt/2621-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2201 2201 100% 0.0 98%
FJ461640.1 Influenza A virus (A/Egypt/2629-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2201 2201 100% 0.0 98%
HQ908469.1 Influenza A virus (A/duck/Egypt/09315s-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2195 2195 98% 0.0 99%
CY062465.1 Influenza A virus (A/Egypt/N00269/2010(H5N1)) segment 6 sequence 2195 2195 100% 0.0 98%
CY062445.1 Influenza A virus (A/Egypt/N04830/2009(H5N1)) segment 6 sequence 2195 2195 100% 0.0 98%
CY041948.1 Influenza A virus (A/Egypt/N04527/2009(H5N1)) segment 6 sequence 2195 2195 100% 0.0 98%
CY041925.1 Influenza A virus (A/Egypt/N02752/2009(H5N1)) segment 6 sequence 2195 2195 100% 0.0 98%
HQ908488.1 Influenza A virus (A/chicken/Egypt/101604v/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2192 2192 100% 0.0 98%
HQ908455.1 Influenza A virus (A/goose/Egypt/0929-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2192 2192 98% 0.0 99%
CY062460.1 Influenza A virus (A/Egypt/N11981/2009(H5N1)) segment 6 sequence 2192 2192 100% 0.0 98%
CY041915.1 Influenza A virus (A/Egypt/N00606/2009(H5N1)) segment 6 sequence 2192 2192 100% 0.0 98%
FJ461642.1 Influenza A virus (A/Egypt/2631-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2192 2192 100% 0.0 98%
EF382360.1 Influenza A virus (A/Egypt/0636-NAMRU3/2007(H5N1)) neuraminidase (NA) gene, complete cds 2192 2192 100% 0.0 98%
GQ184282.1 Influenza A virus (A/chicken/Egypt/0896-NLQP/2008(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2190 2190 98% 0.0 99%
HQ908462.1 Influenza A virus (A/duck/Egypt/093L-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2186 2186 100% 0.0 98%
HQ908450.1 Influenza A virus (A/duck/Egypt/093-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2186 2186 98% 0.0 99%
CY041937.1 Influenza A virus (A/Egypt/N03450/2009(H5N1)) segment 6 sequence 2186 2186 100% 0.0 98%
FJ461656.1 Influenza A virus (A/Egypt/2546-NAMRU3/2008(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2186 2186 100% 0.0 98%
CY062469.1 Influenza A virus (A/Egypt/N01360/2010(H5N1)) segment 6 sequence 2183 2183 100% 0.0 98%
FJ461654.1 Influenza A virus (A/Egypt/2289-NAMRU3/2008(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2183 2183 100% 0.0 98%
HQ908449.1 Influenza A virus (A/chicken/Egypt/092-NLQP/2009(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2179 2179 98% 0.0 99%
FJ888347.1 Influenza A virus (A/reassortant/IDCDC_RG11(Egypt/321/2007 x Puerto Rico/8/1934)(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2177 2177 100% 0.0 98%
FJ461646.1 Influenza A virus (A/Egypt/4082-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2177 2177 100% 0.0 98%
FJ461637.1 Influenza A virus (A/Egypt/2616-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2177 2177 100% 0.0 98%
FJ461635.1 Influenza A virus (A/Egypt/2321-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2177 2177 100% 0.0 98%
FJ461636.1 Influenza A virus (A/Egypt/2331-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2177 2177 100% 0.0 98%
FJ461630.1 Influenza A virus (A/Egypt/1394-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2177 2177 100% 0.0 98%
CY041956.1 Influenza A virus (A/Egypt/N05056/2009(H5N1)) segment 6 sequence 2174 2174 100% 0.0 98%
CY041933.1 Influenza A virus (A/Egypt/N03438/2009(H5N1)) segment 6 sequence 2174 2174 100% 0.0 98%
FJ461638.1 Influenza A virus (A/Egypt/2620-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2170 2170 100% 0.0 98%
GQ184261.1 Influenza A virus (A/duck/Egypt/07322S-NLQP/2007(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2168 2168 100% 0.0 98%
GQ184253.1 Influenza A virus (A/chicken/Egypt/06541-NLQP/2006(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2168 2168 100% 0.0 98%
FJ461647.1 Influenza A virus (A/Egypt/4226-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2168 2168 100% 0.0 98%
FJ461645.1 Influenza A virus (A/Egypt/4081-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2168 2168 100% 0.0 98%
HQ908490.1 Influenza A virus (A/duck/Egypt/101565v/2010(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2165 2165 98% 0.0 98%
CY062434.1 Influenza A virus (A/Egypt/2992-NAMRU3/2006(H5N1)) segment 6 sequence 2165 2165 100% 0.0 98%
GQ184271.1 Influenza A virus (A/chicken/Egypt/0847-NLQP/2008(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2165 2165 100% 0.0 98%
GQ184254.1 Influenza A virus (A/chicken/Egypt/06553-NLQP/2006(H5N1)) segment 6 neuraminidase (NA) gene, complete cds 2165 2165 100% 0.0 98%
FJ461653.1 Influenza A virus (A/Egypt/2514-NAMRU3/2008(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2165 2165 100% 0.0 98%
FJ461648.1 Influenza A virus (A/Egypt/6251-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2165 2165 100% 0.0 98%
FJ461641.1 Influenza A virus (A/Egypt/2630-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2165 2165 100% 0.0 98%
FJ461643.1 Influenza A virus (A/Egypt/2750-NAMRU3/2007(H5N1)) segment 6 neuraminidase (NA) gene, partial cds 2161 2161 100% 0.0 98%

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Commentary

http://www.recombinomics.com/News/05301 ... _2011.html

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Earlier NA sequence from Israel

LOCUS JN582044 1428 bp cRNA linear VRL 04-SEP-2011
DEFINITION Influenza A virus (A/turkey/Jenin/341/2011(H5N1)) segment 6
neuraminidase (NA) gene, complete cds.
ACCESSION JN582044
VERSION JN582044.1 GI:345098242
KEYWORDS .
SOURCE Influenza A virus (A/turkey/Jenin/341/2011(H5N1))
ORGANISM Influenza A virus (A/turkey/Jenin/341/2011(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1428)
AUTHORS Shkoda,I., Lapin,K., Davidson,I. and Panshin,A.
TITLE H5N1 Influenza A virus isoleted in Jenin, Israel in March 2, 2011
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1428)
AUTHORS Shkoda,I., Lapin,K., Davidson,I. and Panshin,A.
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2011) Division of Avian Diseases, Kimron
Veterinary Institute, P.O. Box 12, Bet Dagan 50250, Israel
FEATURES Location/Qualifiers
source 1..1428
/organism="Influenza A virus
(A/turkey/Jenin/341/2011(H5N1))"
/mol_type="viral cRNA"
/strain="A/turkey/Jenin/341/2011"
/serotype="H5N1"
/isolation_source="trachea"
/host="turkey"
/db_xref="taxon:1076654"
/segment="6"
/country="Israel"
/collection_date="02-Mar-2011"
gene 35..1384
/gene="NA"
CDS 35..1384
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AEN68622.1"
/db_xref="GI:345098243"
/translation="MNPNQKIITIGSICMVIGIASLMLQIGNIISIWVSHSIQTGNQC
QDESISNTKFLAEKAVASVTLAGNSSLCPISGWAVYSKDNSIRIGSKGDVFVIREPFI
SCSHLECRTFFLTQGALLNDKHSNGTVKDRSPHRTLMSCPVGEAPSPYNSRFESVAWS
ASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNIMRTQESECACVNVSC
FTVMTDGPSSGQASYKIFKMEKGKVVKSVELDAPNYHYEECSCYPDAGEITCVCRDNW
HGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGPVFPNGAYGVKGFSFKYG
NGVWIGRTKSTNSRSGFEMIWDPNGWTGTDSSFSVKQDIVAITEWSGYSGSFVQHPEL
TGLDCIRPCFWVELIRGRPKESTIWTSGSSISFCGVNGDTVSWSWPDGAELPFTIDK"
ORIGIN
1 tattggtctc agggagcaaa agcaggagtt caaaatgaat ccaaatcaga agataataac
61 catcggatca atctgtatgg taattgggat agctagctta atgttacaaa ttggaaacat
121 aatctcaata tgggtcagtc attcaattca gacagggaat caatgccaag atgaatcaat
181 cagcaacact aaatttcttg ctgagaaagc tgtggcttca gtaacattag cgggcaattc
241 atctctttgt cccattagcg gatgggctgt gtacagtaag gataacagca taaggatcgg
301 ttccaagggg gatgtgtttg ttataagaga gccattcatc tcatgctccc acttggaatg
361 cagaactttc tttttaaccc agggagcctt actgaatgac aagcactcca atggaactgt
421 caaagacaga agccctcaca gaacattaat gagttgtcct gtgggtgagg ctccctcccc
481 atataactca aggtttgagt ctgttgcttg gtcagcaagt gcttgccatg atggcaccag
541 ttggttgaca attggaattt ctggtccaga caatggggct gtggctgtat tgaaatacaa
601 tggcataata acagacacca tcaagagttg gaggaacaac ataatgagaa ctcaagagtc
661 tgaatgtgca tgtgtaaatg tctcttgctt tactgtaatg actgatggac caagtagtgg
721 gcaggcatca tataagatct tcaaaatgga aaagggaaaa gtggttaaat cagtcgaatt
781 ggatgctcct aattatcact atgaggagtg ctcctgttat cctgatgccg gcgaaatcac
841 atgtgtgtgc agggataatt ggcatggatc aaacaggcca tgggtatctt tcaatcaaaa
901 tttggagtat caaataggat atatatgcag tggagttttc ggagacaatc cacgccccaa
961 tgatggaacg ggtagttgtg gtccggtgtt ccctaacggg gcatatgggg taaaagggtt
1021 ttcatttaaa tacggcaatg gtgtttggat cgggagaacc aaaagcacta attccaggag
1081 cggctttgaa atgatttggg acccaaatgg gtggactgga acggacagta gcttttcagt
1141 gaagcaagat attgtagcaa taactgaatg gtcaggatat agcgggagtt ttgtccagca
1201 tccagaactg acaggattag attgcataag accttgtttc tgggttgagt taatcagagg
1261 gcggcctaaa gagagcacaa tttggaccag tggaagcagc atatcttttt gtggggtaaa
1321 tggtgacact gttagttggt cttggccaga cggtgctgag ttgccattca ccattgacaa
1381 gtaatttgtt caaaaaactc cttgtttcta ctaatacgag accatata

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Another NA sequence from Israel

LOCUS JN600466 1367 bp cRNA linear VRL 25-SEP-2011
DEFINITION Influenza A virus (A/harrier/Israel/531/2011(H5N1)) segment 6
neuraminidase (NA) gene, complete cds.
ACCESSION JN600466
VERSION JN600466.1 GI:347438973
KEYWORDS .
SOURCE Influenza A virus (A/harrier/Israel/531/2011(H5N1))
ORGANISM Influenza A virus (A/harrier/Israel/531/2011(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1367)
AUTHORS Shkoda,I., Lapin,K., Davidson,I. and Panshin,A.
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2011) Division of Avian Diseases, Kimron
Veterinary Institute, P.O. Box 12, Bet Dagan 50250, Israel
FEATURES Location/Qualifiers
source 1..1367
/organism="Influenza A virus
(A/harrier/Israel/531/2011(H5N1))"
/mol_type="viral cRNA"
/strain="A/harrier/Israel/531/2011"
/serotype="H5N1"
/isolation_source="trachea"
/host="harrier"
/db_xref="taxon:1077591"
/segment="6"
/country="Israel"
/collection_date="07-Apr-2011"
gene 16..1365
/gene="NA"
CDS 16..1365
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="AEO92116.1"
/db_xref="GI:347438974"
/translation="MNPNQRIITIGSICMVIGIASLMLQIGNIISIWVSHSIQTGNQC
QDESISNTKFLTEKAVASVTLAGNSSLCPISGWAVYSKDNSIRIGSKGDVFVIREPFI
SCSHLECRTFFLTQGALLNDKHSNGTVKDRSPHRTLMSCPVGEAPSPYNSRFESVAWS
ASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNIMRTQESECACVNGSC
FTVMTDGPSNGQASYKIFKMEKGKVVKSVELDAPNYHYEECSCYPDAGEITCVCRDNW
HGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGPVFPNGAYGVKGFSFKYG
NGVWIGRTKSTNSRSGFEMIWDPNGWTGTDSNFSVKQDIVAITEWSGYSGSFVQHPEL
TGLDCIRPCFWVELIRGRPKESTIWTSGSSISFCGVNGDTVSWSWPDGAELPFTIDK"
ORIGIN
1 aagcaggagt tcaaaatgaa tccaaatcag agaataataa ccatcggatc aatctgtatg
61 gtaattggga tagctagctt aatgttacaa attggaaaca taatctcaat atgggtcagt
121 cattcaattc agacagggaa tcaatgccaa gatgaatcaa tcagcaacac taaatttctt
181 actgagaaag ctgtggcttc agtaacatta gcgggcaatt catctctttg tcccattagc
241 ggatgggctg tgtacagtaa ggataacagc ataaggatcg gttccaaggg ggatgtgttt
301 gttataagag agccattcat ctcatgctcc cacttggaat gcagaacttt ctttttaacc
361 cagggagcct tactgaatga caagcactcc aatggaactg tcaaagacag aagccctcac
421 agaacattaa tgagttgtcc tgtgggtgag gctccctccc catataactc aaggtttgag
481 tctgttgctt ggtcagcaag tgcttgccat gatggcacca gttggttgac aattggaatt
541 tctggtccag acaatggggc tgtggctgta ttgaaataca atggcataat aacagacacc
601 atcaagagtt ggaggaacaa cataatgaga actcaagagt ctgaatgtgc atgtgtaaat
661 ggctcttgct ttactgtaat gactgatgga ccaagtaatg ggcaggcatc atataagatc
721 ttcaaaatgg aaaagggaaa agtggttaaa tcagtcgaat tggatgctcc taattatcac
781 tatgaggagt gctcctgtta tcctgatgcc ggcgaaatca catgtgtgtg cagggataat
841 tggcatggat caaacaggcc atgggtatct ttcaatcaaa atttggagta ccaaatagga
901 tatatatgca gtggagtttt cggagacaat ccacgcccca atgatggaac gggtagttgt
961 ggtccggtgt tccctaacgg ggcatatggg gtaaaagggt tttcatttaa atacggcaat
1021 ggtgtttgga tcgggagaac caaaagcact aattccagga gcggctttga aatgatttgg
1081 gacccaaatg ggtggactgg aacggacagt aacttttcag tgaagcaaga tattgtagca
1141 ataactgaat ggtcaggata tagcgggagt tttgtccagc atccagaact gacaggatta
1201 gattgcataa gaccttgttt ctgggttgag ttaatcagag ggcggcctaa agagagcaca
1261 atttggacca gtggaagcag catatctttt tgtggggtaa atggtgacac tgttagttgg
1321 tcttggccag acggtgctga gttgccattc accattgaca agtaatt

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HA sequences from the NA sequences with H1N1pdm09 polymorphisms is the dominant H5 in Egypt among 2011 isolates.

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Closest human H5N1 case to NA of emerging sub-clade

LOCUS CY062461 1350 bp cRNA linear VRL 30-APR-2010
DEFINITION Influenza A virus (A/Egypt/N14604/2009(H5N1)) segment 6 sequence.
ACCESSION CY062461
VERSION CY062461.1 GI:295443478
KEYWORDS .
SOURCE Influenza A virus (A/Egypt/N14604/2009(H5N1))
ORGANISM Influenza A virus (A/Egypt/N14604/2009(H5N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1350)
AUTHORS Elassal,E.M., Kandeel,A., Abdelghani,A.S., Elsayed,N.M.,
Gomaa,A.A., Younan,M., Earhart,K.C., Turner,M., Pimentel,G. and
Barthel,R.V.
TITLE Influenza A subtype H5N1 viruses from Egypt
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1350)
AUTHORS Elassal,E.M., Kandeel,A., Abdelghani,A.S., Elsayed,N.M.,
Gomaa,A.A., Younan,M., Earhart,K.C., Turner,M., Pimentel,G. and
Barthel,R.V.
TITLE Direct Submission
JOURNAL Submitted (30-APR-2010) Viral and Zoonotic Diseases Research
Program, U.S. Naval Medical Research Unit No. 3, Extension of
Ramses Street, Nasr City, Cairo 11517, Egypt
FEATURES Location/Qualifiers
source 1..1350
/organism="Influenza A virus (A/Egypt/N14604/2009(H5N1))"
/mol_type="viral cRNA"
/strain="A/Egypt/N14604/2009"
/serotype="H5N1"
/isolation_source="Throat Swab"
/host="human; gender F; age 21"
/db_xref="taxon:760594"
/segment="6"
/country="Egypt: Gharbeya"
/collection_date="19-Dec-2009"
gene 1..1350
/gene="NA"
CDS 1..1350
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="ADG21424.1"
/db_xref="GI:295443479"
/translation="MNPNQKIITIGSICMVIGIASLMLQIGNMISIWVSHSIQTGNQC
QDESISNTKFLTEKAVASVTLAGNSSLCPISGWAVYSKDNSIRIGSKGDVFVIREPFI
SCSHLECRTFFLTQGALLNDKHSNGTVKDRSPHRTLMSCPVGEAPSPYNSRFESVAWS
ASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNIMRTQESECACVNGSC
FTVMTDGPSSGQASYKIFKMEKGKVVKSVELDAPNYHYEECSCYPDAGEITCVCRDNW
HGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGPVFPNGAYGVKGFSFKYG
NGVWIGRTKSTNSRSGFEMIWDPNGWTGTDSSFSVKQDIVAITDWSGYSGSFVQHPEL
TGLDCIRPCFWVELIRGRPKESTIWTSGSSISFCGVNGDTVSWSWPDGAELPFTIDK"
ORIGIN
1 atgaatccaa atcagaagat aataaccatc ggatcaatct gtatggtaat tgggatagct
61 agcttaatgt tacaaattgg aaacatgatc tcaatatggg tcagtcattc aattcagaca
121 gggaatcaat gccaagatga atcaatcagc aacactaaat ttcttactga gaaagctgtg
181 gcttcagtaa cattagcggg caattcatct ctttgtccca ttagcggatg ggctgtgtac
241 agtaaggata acagcataag gatcggttcc aagggggatg tgtttgttat aagagagcca
301 ttcatctcat gctcccactt ggaatgcaga actttctttt taacccaggg agccttactg
361 aatgacaagc actccaatgg aactgtcaaa gacagaagcc ctcacagaac attaatgagt
421 tgtcctgtgg gtgaggctcc ctccccatat aactcaaggt ttgagtctgt tgcttggtca
481 gcaagtgctt gccatgatgg caccagttgg ttgacaattg gaatttctgg tccagacaat
541 ggggctgtgg ctgtattgaa atacaatggc ataataacag acaccatcaa gagttggagg
601 aacaacataa tgagaactca agagtctgaa tgtgcatgtg taaatggctc ttgctttact
661 gtaatgactg atggaccaag tagtgggcag gcatcatata agatcttcaa aatggaaaag
721 ggaaaagtgg ttaaatcagt cgaattggat gctcctaatt atcactatga ggagtgctcc
781 tgttatcctg atgccggcga aatcacatgt gtgtgcaggg ataattggca tggatcaaat
841 aggccatggg tatctttcaa tcaaaatttg gagtatcaaa taggatatat atgcagtgga
901 gttttcggag acaatccacg ccccaatgat ggaacaggta gttgtggtcc ggtgttccct
961 aacggggcat atggggtaaa agggttttca tttaaatacg gcaatggtgt ttggatcggg
1021 agaaccaaaa gcactaattc caggagcggc tttgaaatga tttgggaccc aaatgggtgg
1081 actggaacgg acagtagctt ttcagtgaag caagatatcg tagcaataac tgattggtca
1141 ggatatagcg ggagttttgt ccagcatcca gaactgacag gattagattg cataagacct
1201 tgtttctggg ttgagttaat cagagggcgg cctaaagaga gcacaatttg gaccagtgga
1261 agcagcatat ctttttgtgg ggtaaatggt gacactgtta gttggtcttg gccagacggt
1321 gctgagttgc cattcaccat tgacaagtaa

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WHO update on above case:

21 December 2009 -The Ministry of Health of Egypt has reported a new laboratory confirmed human case of avian influenza A(H5N1) on 19 December 2009.

The case is a 21 year old female from the El Tanta District of Gharbia Governorate. She developed symptoms of fever and cough on 15 December 2009.

She was admitted to Tanta Fever Hospital where she received oseltamivir treatment on the same day. She is in a stable condition. Investigation revealed that the case had close contact with dead poultry and was involved in slaughtering sick birds.

The case was confirmed by the Egyptian Central Public Health Laboratories, a National Influenza Center of the WHO Global Influenza Surveillance Network (GISN).

Of the 90 laboratory confirmed cases of Avian influenza A(H5N1) reported in Egypt, 27 have been fatal.
http://www.who.int/csr/don/2009_12_21/en/index.html

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The new NA sub-clade has appended 6 polymorphisms onto the A/Egypt/N14604/2009 background and 3 of the 6 are nonsynonymous (G87A, G271A, T1134) coding for M29I, R91K, and D378E, respectively. All three nonsynomous chnages (and adjacent sequences) exactly match H1N1pdm09.

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