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 Post subject: reassortment in India
PostPosted: Mon Nov 22, 2010 2:52 am 
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Joined: Tue Sep 01, 2009 11:54 pm
Posts: 1785
Location: germany
http://www.springerlink.com/content/x3w ... ltext.html


I get :

Code:
-m-m-r-m   A/Eastern India/107/2009/08
-m-r-r--   A/KOL/2086/2009
-m-r-r-r   A/KOL/2449/2009
-m-r-r-r   A/KOL/2465/2009


-:unknown
m:mexflu=pandemic,new,swine,flu (2009)
r=Russian flu = semi-pandemic China/Russia(1977) = seasonal H1N1


at least two different reassortment patterns

not one complete genome, so we don't know what segments are
from what strain


1.2 years of delay until we hear about this reassortment.
Apparantly it didn't spread to other countries - else they would have
told us ... or not ?

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no patents on genes, publish the GISAID sequences !


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PostPosted: Tue Jun 07, 2011 5:12 am 
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Joined: Tue Sep 01, 2009 11:54 pm
Posts: 1785
Location: germany
HM460507 Human 2 H1N1 India 2009 2274 Influenza A virus (A/KOL/2086/2009(H1N1)) yes
HM371158 Human 4 H1N1 India 2009 974 Influenza A virus (A/KOL/2086/2009(H1N1))
HM371163 Human 6 H1N1 India 2009 1251 Influenza A virus (A/KOL/2086/2009(H1N1))
HQ154078 Human 2 H1N1 India 2009/08 2274 Influenza A virus (A/KOL/230/2009(H1N1)) yes
HM460510 Human 2 H1N1 India 2009 2274 Influenza A virus (A/KOL/2449/2009(H1N1)) yes
HM460498 Human 4 H1N1 India 2009 1029 Influenza A virus (A/KOL/2449/2009(H1N1))
HM460505 Human 6 H1N1 India 2009 1413 Influenza A virus (A/KOL/2449/2009(H1N1)) yes
HM460503 Human 8 H1N1 India 2009 693 Influenza A virus (A/KOL/2449/2009(H1N1))
HM460511 Human 2 H1N1 India 2009 273 Influenza A virus (A/KOL/2465/2009(H1N1))
HM460499 Human 4 H1N1 India 2009 1029 Influenza A virus (A/KOL/2465/2009(H1N1))
HM460506 Human 6 H1N1 India 2009 1413 Influenza A virus (A/KOL/2465/2009(H1N1)) yes
HM460504 Human 8 H1N1 India 2009 693 Influenza A virus (A/KOL/2465/2009(H1N1))
HQ154075 Human 2 H1N1 India 2009/09 273 Influenza A virus (A/KOL/2482/2009(H1N1))
HQ154084 Human 2 H1N1 India 2009/08 2274 Influenza A virus (A/KOL/927/2009(H1N1))

_________________
no patents on genes, publish the GISAID sequences !


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