Mixin wrote:
Gs,
I found ~24 isolates with all 8 segments. I aligned them and found 4 with (PA/02:(Kenya+)): A108G,G205A,C690T,A736G,A887C,A1131G,G1545A
A/Mexico/4553/2010
A/Hubei-Wuchang/1271/2010
A/Shanghai-Luwan/1568/2010
A/Shanghai-Luwan/1400/2010
I'm unfamaliar with H3N2.. so does that show reassortment or do I have to look at other segments?
G204A
EPI295222 A/Mexico/4553/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI295214 A/Mexico/4553/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI293885 A/Hubei-Wuchang/1271/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI293877 A/Shanghai-Luwan/1568/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI293845 A/Hubei-Enshi/1250/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI293837 A/Shanghai-Luwan/1400/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI285369 A/Managua/4218.02/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI275491 A/Japan/WRAIR1140P/2009 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI274025 A/California/VRDL172/2009 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI270312 A/Rhode Island/01/2010 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI96730 A/Memphis/5/1988 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI91445 A/New York/518/1998 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI91255 A/New York/487/2003 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811
EPI91236 A/New York/481/2003 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811
EPI84975 A/New York/417/2002 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811
EPI84804 A/New York/489/2003 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811
EPI57857 A/Queensland/10/2000 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI57154 A/Western Australia/71/2005 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI54485 A/New York/78/2002 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811
EPI49749 A/Queensland/7/2000 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI48718 A/Queensland/3/2000 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI48281 A/Queensland/4/2000 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI38339 A/New York/750/1994 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI37332 A/New York/749/1994 (A/H3N2) segment 1 (PB2) 27.0 6.04811
EPI12864 A/England/73/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12862 A/England/57/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12860 A/England/97/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12858 A/England/90/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12856 A/England/5/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12854 A/England/3/02 (A/H1N2) segment 1 (PB2) 27.0 6.04811
EPI12852 A/England/691/01 (A/H1N2 seasonal) segment 1 (PB2) 27.0 6.04811