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wotan
 Post subject: New sequence from Norway
PostPosted: Mon Nov 30, 2009 3:42 pm 
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Joined: Tue Aug 11, 2009 2:58 pm
Posts: 1325
Location: Katy, TX
New in Genbank:
http://www.ncbi.nlm.nih.gov/nuccore/CY052019

This is a full sequence and was taken from a post-mortem lung sample. Our missing D225G, perhaps?

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wotan
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 3:55 pm 
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Joined: Tue Aug 11, 2009 2:58 pm
Posts: 1325
Location: Katy, TX
If I used the tools at Genbank correctly then it is D225G.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 6:35 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
Yes, this sequence is from the first fatality from Norway and has D225G.

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Last edited by niman on Mon Nov 30, 2009 6:39 pm, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 6:38 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
/organism="Influenza A virus (A/Norway/3206-3/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Norway/3206-3/2009(H1N1)"
/serotype="H1N1"
/isolation_source="gender:M; age:adult; post mortem lung
specimen"
/host="human"
/db_xref="taxon:696538"
/segment="4"
/lab_host="MDCK2 passage(s)"
/country="Norway: Oslo"
/collection_date="01-Sep-2009"

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 6:59 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
HA travel log for 3364-2

gb|CY052014.1| Influenza A virus (A/Norway/4021/2009(H1N1)) s... 30.2 47
gb|CY052006.1| Influenza A virus (A/Norway/3440/2009(H1N1)) s... 30.2 47
gb|CY051998.1| Influenza A virus (A/Norway/3364-2/2009(H1N1))... 30.2 47
gb|CY051047.1| Influenza A virus (A/Wisconsin/629-D00008/2009... 30.2 47
gb|EF599727.1| Influenza A virus (A/lake ice/Lake Park/Siberi... 30.2 47

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Last edited by niman on Tue Dec 01, 2009 8:09 am, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 7:00 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
HA travel log for 3364-2

gb|CY052007.1| Influenza A virus (A/Norway/3478/2009(H1N1)) s... 32.2 12
gb|CY052006.1| Influenza A virus (A/Norway/3440/2009(H1N1)) s... 32.2 12
gb|CY051998.1| Influenza A virus (A/Norway/3364-2/2009(H1N1))... 32.2 12

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Last edited by niman on Tue Dec 01, 2009 8:11 am, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 7:00 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
HA travel log for 3364-2
gb|GQ162200.1| Influenza A virus (A/Mexico/4635/2009(H1N1)) s... 38.2 0.19

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Last edited by niman on Tue Dec 01, 2009 8:12 am, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 7:01 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
HA travel log for 3364-2

gb|GU052267.1| Influenza A virus (A/Swine/Indiana/1726/1988(H... 34.2 3.0
gb|CY052014.1| Influenza A virus (A/Norway/4021/2009(H1N1)) s... 34.2 3.0
gb|CY052006.1| Influenza A virus (A/Norway/3440/2009(H1N1)) s... 34.2 3.0
gb|CY052004.1| Influenza A virus (A/Norway/3371/2009(H1N1)) s... 34.2 3.0
gb|CY052003.1| Influenza A virus (A/Norway/3370/2009(H1N1)) s... 34.2 3.0
gb|CY051998.1| Influenza A virus (A/Norway/3364-2/2009(H1N1))... 34.2 3.0
gb|CY051895.1| Influenza A virus (A/Texas/45062633/2009(H1N1)... 34.2 3.0
gb|CY051807.1| Influenza A virus (A/New York/4870/2009(H1N1))... 34.2 3.0
gb|CY051479.1| Influenza A virus (A/Wisconsin/629-S0410/2009(... 34.2 3.0
gb|CY051375.1| Influenza A virus (A/Wisconsin/629-S0247/2009(... 34.2 3.0
gb|CY051367.1| Influenza A virus (A/Wisconsin/629-S0248/2009(... 34.2 3.0
gb|CY051287.1| Influenza A virus (A/Wisconsin/629-S0173/2009(... 34.2 3.0
gb|CY051271.1| Influenza A virus (A/Wisconsin/629-S0146/2009(... 34.2 3.0
gb|CY051255.1| Influenza A virus (A/Wisconsin/629-S0086/2009(... 34.2 3.0
gb|CY051079.1| Influenza A virus (A/Wisconsin/629-D01326/2009... 34.2 3.0
gb|CY051063.1| Influenza A virus (A/Wisconsin/629-D00101/2009... 34.2 3.0
gb|GQ906804.1| Influenza A virus (A/reassortant/NYMC X-181A(C... 34.2 3.0
gb|GQ906801.1| Influenza A virus (A/reassortant/NYMC X-181(Ca... 34.2 3.0
gb|CY046899.1| Influenza A virus (A/Wisconsin/629-D00829/2009... 34.2 3.0
gb|CY046835.1| Influenza A virus (A/Wisconsin/629-D01883/2009... 34.2 3.0
gb|CY046827.1| Influenza A virus (A/Wisconsin/629-D02144/2009... 34.2 3.0
gb|GQ332643.1| Influenza A virus (A/New York/1682-WC_RG1/2009... 34.2 3.0
gb|CY044981.1| Influenza A virus (A/New York/3747/2009(H1N1))... 34.2 3.0
gb|GQ484355.1| Influenza A virus (A/swine/Kansas/77778/2007(H... 34.2 3.0
gb|GQ422385.1| Influenza A virus (A/swine/Guangdong/103/2002(... 34.2 3.0
gb|CY044365.1| Influenza A virus (A/New Jersey/11/1976(H1N1))... 34.2 3.0
gb|GQ496602.1| Influenza A virus (A/Lishui/01/2009(H1N1)) seg... 34.2 3.0
gb|GQ452272.1| Influenza A virus (A/swine/Guangdong/2/2009(H1... 34.2 3.0
gb|FJ536842.1| Influenza A virus (A/swine/Guangdong/1/2005(H1... 34.2 3.0
gb|GQ405861.1| Influenza A virus (A/swine/Tianjin/1/2004(H1N2... 34.2 3.0
gb|GQ377052.1| Influenza A virus (A/California/08/2009(H1N1))... 34.2 3.0
gb|GQ365436.1| Influenza A virus (A/Kagoshima/1/2009(H1N1)) s... 34.2 3.0
gb|GQ338402.1| Influenza A virus (A/Pennsylvania/09/2009(H1N1... 34.2 3.0
gb|GQ334338.1| Influenza A virus (A/Fukuoka-C/3/2009(H1N1)) s... 34.2 3.0
gb|GQ334330.1| Influenza A virus (A/Fukuoka-C/2/2009(H1N1)) s... 34.2 3.0
gb|GQ287619.1| Influenza A virus (A/Fukuoka-C/1/2009(H1N1)) s... 34.2 3.0
gb|GQ280121.1| Influenza A virus (A/reassortant/NIBRG-121(Cal... 34.2 3.0
gb|GQ280797.1| Influenza A virus (A/California/04/2009(H1N1))... 34.2 3.0
gb|GQ229373.1| Influenza A virus (A/swine/Hong Kong/1110/2006... 34.2 3.0
gb|GQ229333.1| Influenza A virus (A/swine/Hong Kong/1562/2005... 34.2 3.0
gb|GQ229317.1| Influenza A virus (A/swine/Hong Kong/554/2003(... 34.2 3.0
gb|GQ247722.1| Influenza A virus (A/resassortant/IVR-153(A/Ca... 34.2 3.0
gb|GQ214335.1| Influenza A virus (A/reassortant/NYMC X-179A(C... 34.2 3.0
gb|CY040603.1| Influenza A virus (A/swine/North Carolina/4871... 34.2 3.0
gb|CY040602.1| Influenza A virus (A/swine/North Carolina/4775... 34.2 3.0
gb|CY040601.1| Influenza A virus (A/swine/North Carolina/4509... 34.2 3.0
gb|CY040600.1| Influenza A virus (A/swine/North Carolina/4488... 34.2 3.0
gb|CY040599.1| Influenza A virus (A/swine/North Carolina/4427... 34.2 3.0
gb|CY040598.1| Influenza A virus (A/swine/North Carolina/3668... 34.2 3.0
gb|CY040597.1| Influenza A virus (A/swine/North Carolina/2969... 34.2 3.0
gb|CY040596.1| Influenza A virus (A/swine/North Carolina/2676... 34.2 3.0
gb|CY040594.1| Influenza A virus (A/swine/North Carolina/4511... 34.2 3.0
gb|CY040593.1| Influenza A virus (A/swine/North Carolina/4488... 34.2 3.0
gb|CY040592.1| Influenza A virus (A/swine/North Carolina/4452... 34.2 3.0
gb|CY040591.1| Influenza A virus (A/swine/North Carolina/4350... 34.2 3.0
gb|CY040589.1| Influenza A virus (A/swine/North Carolina/3789... 34.2 3.0
gb|CY040588.1| Influenza A virus (A/swine/North Carolina/3527... 34.2 3.0
gb|CY040587.1| Influenza A virus (A/swine/North Carolina/2948... 34.2 3.0
gb|CY040586.1| Influenza A virus (A/swine/North Carolina/1286... 34.2 3.0
gb|CY040578.1| Influenza A virus (A/swine/North Carolina/4257... 34.2 3.0
gb|CY040576.1| Influenza A virus (A/swine/North Carolina/3876... 34.2 3.0
gb|CY040573.1| Influenza A virus (A/swine/North Carolina/2629... 34.2 3.0
gb|CY040571.1| Influenza A virus (A/swine/North Carolina/1286... 34.2 3.0
gb|CY040569.1| Influenza A virus (A/swine/North Carolina/3456... 34.2 3.0
gb|CY040565.1| Influenza A virus (A/swine/North Carolina/4613... 34.2 3.0
gb|CY040561.1| Influenza A virus (A/swine/North Carolina/2812... 34.2 3.0
gb|CY040559.1| Influenza A virus (A/swine/North Carolina/9647... 34.2 3.0
gb|CY040557.1| Influenza A virus (A/swine/North Carolina/4743... 34.2 3.0
gb|CY040555.1| Influenza A virus (A/swine/North Carolina/4685... 34.2 3.0
gb|CY040553.1| Influenza A virus (A/swine/North Carolina/4620... 34.2 3.0
gb|CY040551.1| Influenza A virus (A/swine/North Carolina/4401... 34.2 3.0
gb|CY040549.1| Influenza A virus (A/swine/North Carolina/4395... 34.2 3.0
gb|CY040547.1| Influenza A virus (A/swine/North Carolina/4311... 34.2 3.0
gb|CY040543.1| Influenza A virus (A/swine/North Carolina/7386... 34.2 3.0
gb|CY040541.1| Influenza A virus (A/swine/Texas/36440-2/2005(... 34.2 3.0
gb|CY039991.1| Influenza A Virus (A/New Jersey/8/1976(H1N1)) ... 34.2 3.0
gb|CY039925.1| Influenza A Virus (A/swine/Indiana/1726/1988(H... 34.2 3.0
gb|CY039917.1| Influenza A Virus (A/swine/Wisconsin/1915/1988... 34.2 3.0
gb|CY039909.1| Influenza A Virus (A/Maryland/12/1991(H1N1)) s... 34.2 3.0
gb|FJ986621.1| Influenza A virus (A/Ohio/02/2007(H1N1)) segme... 34.2 3.0
gb|FJ986620.1| Influenza A virus (A/Ohio/01/2007(H1N1)) segme... 34.2 3.0
gb|FJ986619.1| Influenza A virus (A/Wisconsin/87/2005(H1N1)) ... 34.2 3.0
gb|FJ986618.1| Influenza A virus (A/Iowa/01/2006(H1N1)) segme... 34.2 3.0
gb|GQ117044.1| Influenza A virus (A/California/04/2009(H1N1))... 34.2 3.0
gb|FJ981613.1| Influenza A virus (A/California/07/2009(H1N1))... 34.2 3.0
gb|FJ971076.1| Influenza A virus (A/California/08/2009(H1N1))... 34.2 3.0
gb|FJ969540.1| Influenza A virus (A/California/07/2009(H1N1))... 34.2 3.0
gb|FJ966974.1| Influenza A virus (A/California/07/2009(H1N1))... 34.2 3.0
gb|FJ966082.1| Influenza A virus (A/California/04/2009(H1N1))... 34.2 3.0
gb|FJ789832.1| Influenza A virus (A/swine/Shanghai/3/2005(H1N... 34.2 3.0
gb|FJ750522.1| Influenza A virus (A/ferret/Iowa/15828B/2008(H... 34.2 3.0
gb|EU604689.1| Influenza A virus (A/swine/OH/511445/2007(H1N1... 34.2 3.0
gb|CY036863.1| Influenza A virus (A/swine/Tennessee/107/1977(... 34.2 3.0
gb|CY036799.1| Influenza A virus (A/swine/Wisconsin/30954/197... 34.2 3.0
dbj|AB434296.1| Influenza A virus (A/swine/Ratchaburi/NIAH550... 34.2 3.0
dbj|AB434288.1| Influenza A virus (A/swine/Ratchaburi/NIAH148... 34.2 3.0
gb|FJ357104.1| Influenza A virus (A/turkey/NC/17026/1988(H1N1... 34.2 3.0
gb|CY035070.1| Influenza A virus (A/swine/Memphis/1/1990(H1N1... 34.2 3.0
gb|CY035030.1| Influenza A virus (A/X-53A(Puerto Rico/8/1934-... 34.2 3.0

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Last edited by niman on Tue Dec 01, 2009 8:12 am, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 7:01 pm 
Online

Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
HA travel log for 3364-2

gb|CY052014.1| Influenza A virus (A/Norway/4021/2009(H1N1)) s... 38.2 0.19
gb|CY052013.1| Influenza A virus (A/Norway/4020/2009(H1N1)) s... 38.2 0.19
gb|CY052012.1| Influenza A virus (A/Norway/3855/2009(H1N1)) s... 38.2 0.19
gb|CY052006.1| Influenza A virus (A/Norway/3440/2009(H1N1)) s... 38.2 0.19
gb|CY052004.1| Influenza A virus (A/Norway/3371/2009(H1N1)) s... 38.2 0.19
gb|CY052003.1| Influenza A virus (A/Norway/3370/2009(H1N1)) s... 38.2 0.19
gb|CY051998.1| Influenza A virus (A/Norway/3364-2/2009(H1N1))... 38.2 0.19
gb|CY051994.1| Influenza A virus (A/Norway/3278/2009(H1N1)) s... 38.2 0.19
gb|CY051989.1| Influenza A virus (A/Norway/2924/2009(H1N1)) s... 38.2 0.19
gb|CY051982.1| Influenza A virus (A/Catalonia/S1761/2009(H1N1... 38.2 0.19
gb|CY051967.1| Influenza A virus (A/Catalonia/S1751/2009(H1N1... 38.2 0.19
gb|CY051964.1| Influenza A virus (A/Catalonia/S1748/2009(H1N1... 38.2 0.19
gb|CY051949.1| Influenza A virus (A/Catalonia/S1687/2009(H1N1... 38.2 0.19
gb|GU211235.1| Influenza A virus (A/Omsk/02/2009(H1N1)) segme... 38.2 0.19
gb|CY050846.1| Influenza A virus (A/Ulaanbaatar/6133/2009(H1N... 38.2 0.19
gb|CY050845.1| Influenza A virus (A/Ulaanbaatar/6266/2009(H1N... 38.2 0.19
gb|CY051807.1| Influenza A virus (A/New York/4870/2009(H1N1))... 38.2 0.19
gb|CY051783.1| Influenza A virus (A/New York/4844/2009(H1N1))... 38.2 0.19
gb|CY049963.1| Influenza A virus (A/Santo Domingo/WR1059N/200... 38.2 0.19
gb|CY049955.1| Influenza A virus (A/Santo Domingo/WR1058N/200... 38.2 0.19
gb|CY049947.1| Influenza A virus (A/Santo Domingo/WR1057N/200... 38.2 0.19
gb|CY049571.1| Influenza A virus (A/Singapore/ON1156/2009(H1N... 38.2 0.19
gb|CY049068.1| Influenza A virus (A/Singapore/ON129/2009(H1N1... 38.2 0.19
dbj|AB530489.1| Influenza A virus (A/Nagasaki/NU-1/2009(H1N1)... 38.2 0.19
dbj|AB530487.1| Influenza A virus (A/Nagasaki/HA-42/2009(H1N1... 38.2 0.19
dbj|AB530486.1| Influenza A virus (A/Nagasaki/HA-41/2009(H1N1... 38.2 0.19
dbj|AB530485.1| Influenza A virus (A/Nagasaki/HA-40/2009(H1N1... 38.2 0.19
dbj|AB530484.1| Influenza A virus (A/Nagasaki/HA-39/2009(H1N1... 38.2 0.19
dbj|AB530483.1| Influenza A virus (A/Nagasaki/HA-38/2009(H1N1... 38.2 0.19
dbj|AB530482.1| Influenza A virus (A/Nagasaki/HA-36/2009(H1N1... 38.2 0.19
dbj|AB530481.1| Influenza A virus (A/Nagasaki/HA-35/2009(H1N1... 38.2 0.19
dbj|AB530480.1| Influenza A virus (A/Nagasaki/HA-34/2009(H1N1... 38.2 0.19
dbj|AB530479.1| Influenza A virus (A/Nagasaki/HA-33/2009(H1N1... 38.2 0.19
dbj|AB530478.1| Influenza A virus (A/Nagasaki/HA-32/2009(H1N1... 38.2 0.19
dbj|AB530477.1| Influenza A virus (A/Nagasaki/HA-31/2009(H1N1... 38.2 0.19
dbj|AB530476.1| Influenza A virus (A/Nagasaki/HA-29/2009(H1N1... 38.2 0.19
dbj|AB530475.1| Influenza A virus (A/Nagasaki/HA-28/2009(H1N1... 38.2 0.19
dbj|AB530474.1| Influenza A virus (A/Nagasaki/HA-27/2009(H1N1... 38.2 0.19
dbj|AB530473.1| Influenza A virus (A/Nagasaki/HA-26/2009(H1N1... 38.2 0.19
dbj|AB530472.1| Influenza A virus (A/Nagasaki/HA-25/2009(H1N1... 38.2 0.19
dbj|AB530471.1| Influenza A virus (A/Nagasaki/HA-22/2009(H1N1... 38.2 0.19
dbj|AB530470.1| Influenza A virus (A/Nagasaki/HA-18/2009(H1N1... 38.2 0.19
dbj|AB530469.1| Influenza A virus (A/Nagasaki/HA-17/2009(H1N1... 38.2 0.19
dbj|AB530468.1| Influenza A virus (A/Nagasaki/HA-16/2009(H1N1... 38.2 0.19
dbj|AB530466.1| Influenza A virus (A/Nagasaki/HA-14/2009(H1N1... 38.2 0.19
dbj|AB530465.1| Influenza A virus (A/Nagasaki/HA-13/2009(H1N1... 38.2 0.19
dbj|AB530464.1| Influenza A virus (A/Nagasaki/HA-12/2009(H1N1... 38.2 0.19
dbj|AB530463.1| Influenza A virus (A/Nagasaki/HA-11/2009(H1N1... 38.2 0.19
dbj|AB530462.1| Influenza A virus (A/Nagasaki/HA-10/2009(H1N1... 38.2 0.19
gb|CY049713.1| Influenza A virus (A/Catalonia/S1501/2009(H1N1... 38.2 0.19
gb|CY049039.1| Influenza A virus (A/Catalonia/S1402/2009(H1N1... 38.2 0.19
gb|GU117765.1| Influenza A virus (A/Nagasaki/I01/2009(H1N1)) ... 38.2 0.19
gb|CY047275.1| Influenza A virus (A/Catalonia/S1268/2009(H1N1... 38.2 0.19
gb|CY047272.1| Influenza A virus (A/Catalonia/S1267/2009(H1N1... 38.2 0.19
gb|CY047179.1| Influenza A virus (A/Catalonia/S1181/2009(H1N1... 38.2 0.19
gb|CY047176.1| Influenza A virus (A/Catalonia/S1179/2009(H1N1... 38.2 0.19
gb|CY047161.1| Influenza A virus (A/Catalonia/S1162/2009(H1N1... 38.2 0.19
gb|CY047118.1| Influenza A virus (A/Catalonia/S1096/2009(H1N1... 38.2 0.19
gb|GU014750.1| Influenza A virus (A/Hiroshima/201/2009(H1N1))... 38.2 0.19
gb|GQ894911.1| Influenza A virus (A/Oregon/20/2009(H1N1)) seg... 38.2 0.19
gb|GQ894830.1| Influenza A virus (A/Rhode Island/08/2009(H1N1... 38.2 0.19
gb|CY046065.1| Influenza A virus (A/Italy/132/2009(H1N1)) seg... 38.2 0.19
gb|CY046062.1| Influenza A virus (A/Italy/129/2009(H1N1)) seg... 38.2 0.19
gb|GQ527165.1| Influenza A virus (A/Singapore/TLL51/2009(H1N1... 38.2 0.19
gb|CY044997.1| Influenza A virus (A/New York/3828/2009(H1N1))... 38.2 0.19
gb|GQ484355.1| Influenza A virus (A/swine/Kansas/77778/2007(H... 38.2 0.19
gb|CY044080.1| Influenza A virus (A/New York/3715/2009(H1N1))... 38.2 0.19
gb|CY044072.1| Influenza A virus (A/New York/3702/2009(H1N1))... 38.2 0.19
gb|CY042320.1| Influenza A virus (A/swine/Illinois/Sg-00445/2... 38.2 0.19
gb|CY042316.1| Influenza A virus (A/swine/Illinois/Sg-00444/2... 38.2 0.19
gb|CY042312.1| Influenza A virus (A/swine/Illinois/Sg-00443/2... 38.2 0.19
gb|GQ414768.1| Influenza A virus (A/Sao Paulo/43812/2009(H1N1... 38.2 0.19
gb|GQ377095.1| Influenza A virus (A/California/24/2009(H1N1))... 38.2 0.19
gb|GQ359765.1| Influenza A virus (A/Stockholm/31/2009(H1N1)) ... 38.2 0.19
gb|GQ292961.1| Influenza A virus (A/Mexico City/22/2009(H1N1)... 38.2 0.19
gb|GQ229373.1| Influenza A virus (A/swine/Hong Kong/1110/2006... 38.2 0.19
gb|GQ229365.1| Influenza A virus (A/swine/Hong Kong/NS623/200... 38.2 0.19
gb|GQ229333.1| Influenza A virus (A/swine/Hong Kong/1562/2005... 38.2 0.19
gb|GQ229269.1| Influenza A virus (A/swine/Hong Kong/915/2004(... 38.2 0.19
gb|GQ232085.1| Influenza A virus (A/Guangdong/02/2009(H1N1)) ... 38.2 0.19
gb|GQ223435.1| Influenza A virus (A/Guangdong/05/2009(H1N1)) ... 38.2 0.19
gb|CY040603.1| Influenza A virus (A/swine/North Carolina/4871... 38.2 0.19
gb|CY040602.1| Influenza A virus (A/swine/North Carolina/4775... 38.2 0.19
gb|CY040601.1| Influenza A virus (A/swine/North Carolina/4509... 38.2 0.19
gb|CY040600.1| Influenza A virus (A/swine/North Carolina/4488... 38.2 0.19
gb|CY040599.1| Influenza A virus (A/swine/North Carolina/4427... 38.2 0.19
gb|CY040595.1| Influenza A virus (A/swine/North Carolina/9856... 38.2 0.19
gb|CY040594.1| Influenza A virus (A/swine/North Carolina/4511... 38.2 0.19
gb|CY040593.1| Influenza A virus (A/swine/North Carolina/4488... 38.2 0.19
gb|CY040592.1| Influenza A virus (A/swine/North Carolina/4452... 38.2 0.19
gb|CY040591.1| Influenza A virus (A/swine/North Carolina/4350... 38.2 0.19
gb|CY040586.1| Influenza A virus (A/swine/North Carolina/1286... 38.2 0.19
gb|CY040578.1| Influenza A virus (A/swine/North Carolina/4257... 38.2 0.19
gb|CY040576.1| Influenza A virus (A/swine/North Carolina/3876... 38.2 0.19
gb|CY040573.1| Influenza A virus (A/swine/North Carolina/2629... 38.2 0.19
gb|CY040571.1| Influenza A virus (A/swine/North Carolina/1286... 38.2 0.19
gb|CY040569.1| Influenza A virus (A/swine/North Carolina/3456... 38.2 0.19
gb|CY040565.1| Influenza A virus (A/swine/North Carolina/4613... 38.2 0.19
gb|CY040563.1| Influenza A virus (A/swine/North Carolina/4390... 38.2 0.19

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Last edited by niman on Tue Dec 01, 2009 8:12 am, edited 1 time in total.

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niman
 Post subject: Re: New sequence from Norway
PostPosted: Mon Nov 30, 2009 7:28 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
The D225G codon for 3206-3 actually has two changes (one that codes for D225G and the other for D225E. Two sequences from Spain have the same combination

gb|CY047083.1| Influenza A virus (A/Catalonia/NS2008/2009(H1N... 36.2 0.76
gb|CY047080.1| Influenza A virus (A/Catalonia/NS2001/2009(H1N... 36.2 0.76

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Last edited by niman on Tue Dec 01, 2009 8:13 am, edited 1 time in total.

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