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PostPosted: Wed Nov 18, 2009 7:53 pm 
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niman wrote:
ms4920 wrote:
niman wrote:
I just did a quick protein check on one of the lung isolates. The only HA change is D225G.

Sorry, I am not a virologist and just a layman. Is that better than you thought or worse? Maybe I just need to watch this post for the people that can ask the questions properly.

Just need to know If I have to get a bunker :eek:

D225G is "in play". It is on multiple H1N1 backgrounds in Brazil, Australia, China, Spain, and has been in the US earlier (and likely here now).

It was also on 1918 and 1919 isolates (as well as earlier swine isolates).

Swine jumps to human create major problems.

This is from the Washington Post article being cited in the Seante hearings:

Look at Ukraine, for example, where public awareness went from "zero" this summer to "panic" this autumn. Late last month, politicians began to speak of mass illness and mass death. The government quarantined several provinces, shut down parliament and banned mass gatherings. When the dust began to settle last week, it appeared that, yes, there had been a small outbreak of swine flu, but also that, no, most of the people who got sick didn't have the H1N1 virus. Swine flu death rates in Ukraine are no higher than those for flu or pneumonia in other years.

http://www.washingtonpost.com/wp-dyn/co ... inionsbox1

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PostPosted: Wed Nov 18, 2009 8:21 pm 
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So does it appear that D225G (or equivalent location for their subtypes) did not appear in the 1957 or 1968 mild-to-moderate pandemics?

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PostPosted: Wed Nov 18, 2009 8:26 pm 
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wotan wrote:
So does it appear that D225G (or equivalent location for their subtypes) did not appear in the 1957 or 1968 mild-to-moderate pandemics?

D225G has been seen in swine previously. I don't think it was in H2N2 or H3N2.

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PostPosted: Wed Nov 18, 2009 8:27 pm 
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wotan wrote:
So does it appear that D225G (or equivalent location for their subtypes) did not appear in the 1957 or 1968 mild-to-moderate pandemics?

Here is the breakdown of the Brazilian samples. All four isolates with RBD chnages (D225G or D225N) were from fatal cases

nasal swab
A/Sao Paulo/57831/2009
A/Sao Paulo/55115/2009
A/Sao Paulo/55312/2009
A/Sao Paulo/2275/2009
A/Sao Paulo/2261/2009
A/Sao Paulo/2193/2009
A/Sao Paulo/2056/2009
A/Distrito Federal/2611/2009
A/Mato Grosso/2329/2009
A/Sao Paulo/2233/2009
A/Sao Paulo/1454/2009

nasopharyngeal secretion
A/Sao Paulo/2303/2009

lung necropsy
A/Sao Paulo/54392/2009
A/Sao Paulo/53838/2009 N
A/Sao Paulo/53823/2009
A/Sao Paulo/53225/2009 G
A/Sao Paulo/53206/2009 G

trachea necropsy
A/Sao Paulo/53845/2009 N

blood post mortum
A/Sao Paulo/43812/2009

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PostPosted: Wed Nov 18, 2009 8:31 pm 
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Commentary on this topic has (reluctantly) made it to FT.

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PostPosted: Wed Nov 18, 2009 8:36 pm 
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wotan wrote:
Commentary on this topic has (reluctantly) made it to FT.

As in links to Recombinomics being posted, commentary here copied and pasted there, or newly recruited "scientists" offering commentary there?

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PostPosted: Wed Nov 18, 2009 8:38 pm 
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niman wrote:
wotan wrote:
Commentary on this topic has (reluctantly) made it to FT.

As in links to Recombinomics being posted, commentary here copied and pasted there, or newly recruited "scientists" offering commentary there?


The Recombinomics commentary has been posted (and linked), but in a nose-held fashion.

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PostPosted: Wed Nov 18, 2009 8:39 pm 
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wotan wrote:
niman wrote:
wotan wrote:
Commentary on this topic has (reluctantly) made it to FT.

As in links to Recombinomics being posted, commentary here copied and pasted there, or newly recruited "scientists" offering commentary there?


The Recombinomics commentary has been posted (and linked), but in a nose-held fashion.

Commentaries are moving up the popularity ladder at NewsNow

http://www.newsnow.co.uk/h/Hot+Topics/F ... lu?type=ts

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PostPosted: Wed Nov 18, 2009 9:02 pm 
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There is an HA marker in the Ternipol isolates, including the two with D225G, again showing it is appended onto two Ukraine backbones (as in acquired via recombination)

gb|CY044365.1| Influenza A virus (A/New Jersey/11/1976(H1N1))... 32.2 12
gb|GQ405861.1| Influenza A virus (A/swine/Tianjin/1/2004(H1N2... 32.2 12
gb|GQ229373.1| Influenza A virus (A/swine/Hong Kong/1110/2006... 32.2 12
gb|GQ229365.1| Influenza A virus (A/swine/Hong Kong/NS623/200... 32.2 12
gb|GQ229341.1| Influenza A virus (A/swine/Hong Kong/294/2009(... 32.2 12
gb|GQ229333.1| Influenza A virus (A/swine/Hong Kong/1562/2005... 32.2 12
gb|GQ229317.1| Influenza A virus (A/swine/Hong Kong/554/2003(... 32.2 12
gb|GQ229309.1| Influenza A virus (A/swine/Hong Kong/78/2003(H... 32.2 12
gb|GQ229293.1| Influenza A virus (A/swine/Hong Kong/NS1659/20... 32.2 12
gb|GQ229277.1| Influenza A virus (A/swine/Hong Kong/103/1993(... 32.2 12
gb|GQ229269.1| Influenza A virus (A/swine/Hong Kong/915/2004(... 32.2 12
gb|CY040567.1| Influenza A virus (A/swine/North Carolina/901/... 32.2 12
gb|CY040559.1| Influenza A virus (A/swine/North Carolina/9647... 32.2 12
gb|CY040549.1| Influenza A virus (A/swine/North Carolina/4395... 32.2 12
gb|CY039991.1| Influenza A Virus (A/New Jersey/8/1976(H1N1)) ... 32.2 12
gb|CY039925.1| Influenza A Virus (A/swine/Indiana/1726/1988(H... 32.2 12
gb|CY039917.1| Influenza A Virus (A/swine/Wisconsin/1915/1988... 32.2 12
gb|CY039909.1| Influenza A Virus (A/Maryland/12/1991(H1N1)) s... 32.2 12
gb|CY036799.1| Influenza A virus (A/swine/Wisconsin/30954/197... 32.2 12
dbj|AB434400.1| Influenza A virus (A/swine/Niigata/1/1977(H1N... 32.2 12
dbj|AB434392.1| Influenza A virus (A/swine/Hokkaido/2/1981(H1... 32.2 12
dbj|AB434288.1| Influenza A virus (A/swine/Ratchaburi/NIAH148... 32.2 12
gb|FJ374511.1| Influenza A virus (A/swine/Shanghai/1/2007(H1N... 32.2 12
gb|FJ357104.1| Influenza A virus (A/turkey/NC/17026/1988(H1N1... 32.2 12
gb|CY035070.1| Influenza A virus (A/swine/Memphis/1/1990(H1N1... 32.2 12
gb|CY035030.1| Influenza A virus (A/X-53A(Puerto Rico/8/1934-... 32.2 12
gb|EU743159.1| Influenza A virus (A/turkey/IA/21089-3/1992(H1... 32.2 12
dbj|AB441170.1| Influenza A virus (A/swine/Miyazaki/1/2006(H1... 32.2 12
gb|EU735786.1| Influenza A virus (A/turkey/NC/19762/1988(H1N1... 32.2 12
gb|EU735794.1| Influenza A virus (A/chicken/PA/35154/1991(H1N... 32.2 12
gb|EU742636.1| Influenza A virus (A/turkey/KS/4880/1980(H1N1)... 32.2 12
gb|CY032213.1| Influenza A virus (A/swine/Wisconsin/1/1961(H1... 32.2 12
gb|CY028780.1| Influenza A virus (A/swine/California/T9001707... 32.2 12
gb|CY028788.1| Influenza A virus (A/swine/Iowa/1/1986(H1N1)) ... 32.2 12
gb|CY028427.1| Influenza A virus (A/swine/Tennessee/4/1978(H1... 32.2 12
gb|CY028187.1| Influenza A virus (A/swine/Wisconsin/30747/197... 32.2 12
gb|CY028179.1| Influenza A virus (A/swine/Tennessee/3/1978(H1... 32.2 12
gb|CY028171.1| Influenza A virus (A/swine/Iowa/2/1987(H1N1)) ... 32.2 12
gb|CY027523.1| Influenza A virus (A/swine/Tennessee/8/1978(H1... 32.2 12
gb|CY027515.1| Influenza A virus (A/swine/Tennessee/5/1978(H1... 32.2 12
gb|EU186411.1| Influenza A virus (A/swine/Korea/GC0503/2005(H... 32.2 12
gb|CY027155.1| Influenza A virus (A/swine/Iowa/24297/1991(H1N... 32.2 12
gb|CY027307.1| Influenza A virus (A/swine/Tennessee/2/1978(H1... 32.2 12
gb|CY026451.1| Influenza A virus (A/swine/Ontario/6/1981(H1N1... 32.2 12
gb|CY026443.1| Influenza A virus (A/swine/Ontario/3/1981(H1N1... 32.2 12
gb|CY026435.1| Influenza A virus (A/swine/Ontario/2/1981(H1N1... 32.2 12
gb|CY026299.1| Influenza A virus (A/swine/Wisconsin/2/1966(H1... 32.2 12
gb|CY026283.1| Influenza A virus (A/swine/Wisconsin/1/1957(H1... 32.2 12
gb|CY026139.1| Influenza A virus (A/Wisconsin/301/1976(H1N1))... 32.2 12
gb|EU139828.1| Influenza A virus (A/swine/Minnesota/1192/2001... 32.2 12
gb|EU139825.1| Influenza A virus (A/swine/Wisconsin/1/1968(H1... 32.2 12
gb|CY025010.1| Influenza A virus (A/swine/Kansas/3024/1987(H1... 32.2 12
gb|CY024925.1| Influenza A virus (A/Ohio/3559/1988(H1N1)) seg... 32.2 12
gb|CY024994.1| Influenza A virus (A/swine/Wisconsin/663/1980(... 32.2 12
gb|CY024978.1| Influenza A virus (A/swine/Tennessee/88/1977(H... 32.2 12
gb|CY024970.1| Influenza A virus (A/swine/Tennessee/87/1977(H... 32.2 12
gb|CY024962.1| Influenza A virus (A/swine/Tennessee/86/1977(H... 32.2 12
gb|CY024954.1| Influenza A virus (A/swine/Tennessee/84/1977(H... 32.2 12
gb|CY022970.1| Influenza A virus (A/swine/Iowa/31483/1988(H1N... 32.2 12
gb|CY022962.1| Influenza A virus (A/swine/Iowa/1/1987(H1N1)) ... 32.2 12
gb|CY022994.1| Influenza A virus (A/swine/Wisconsin/629/1980(... 32.2 12
gb|CY022978.1| Influenza A virus (A/swine/Ontario/1/1981(H1N1... 32.2 12
gb|EF679201.1| Influenza A virus (A/turkey/Kansas/4880/1980 (... 32.2 12
gb|CY022333.1| Influenza A virus (A/swine/Iowa/17672/1988(H1N... 32.2 12
gb|CY022429.1| Influenza A virus (A/swine/Wisconsin/1915/1988... 32.2 12
gb|CY022469.1| Influenza A virus (A/swine/Kansas/3228/1987(H1... 32.2 12
gb|CY022477.1| Influenza A virus (A/swine/Maryland/23239/1991... 32.2 12
gb|CY022461.1| Influenza A virus (A/swine/Wisconsin/8/1980(H1... 32.2 12
gb|CY022453.1| Influenza A virus (A/swine/Wisconsin/661/1980(... 32.2 12
gb|CY022445.1| Influenza A virus (A/swine/Wisconsin/641/1980(... 32.2 12
gb|CY022437.1| Influenza A virus (A/swine/Wisconsin/2/1970(H1... 32.2 12
gb|CY022421.1| Influenza A virus (A/swine/Wisconsin/11/1980(H... 32.2 12
gb|CY022413.1| Influenza A virus (A/swine/Wisconsin/1/1971(H1... 32.2 12
gb|CY022397.1| Influenza A virus (A/swine/Tennessee/1/1975(H1... 32.2 12
gb|CY022389.1| Influenza A virus (A/swine/Ontario/7/1981(H1N1... 32.2 12
gb|CY022381.1| Influenza A virus (A/swine/Ontario/4/1981(H1N1... 32.2 12
gb|CY022365.1| Influenza A virus (A/swine/Minnesota/5892-7/19... 32.2 12
gb|CY022349.1| Influenza A virus (A/swine/Kentucky/1/1976(H1N... 32.2 12
gb|CY022341.1| Influenza A virus (A/swine/Illinois/1/1975(H1N... 32.2 12
gb|CY022301.1| Influenza A virus (A/swine/Tennessee/82/1977(H... 32.2 12
gb|CY022269.1| Influenza A virus (A/swine/Tennessee/10/1977(H... 32.2 12
gb|CY022101.1| Influenza A virus (A/swine/Iowa/4/1976(H1N1)) ... 32.2 12
gb|EF556203.1| Influenza A virus (A/swine/Hainan/1/2005(H1N2)... 32.2 12
gb|EF556201.1| Influenza A virus (A/swine/Guangxi/17/2005(H1N... 32.2 12
gb|EF556199.1| Influenza A virus (A/swine/Guangxi/13/2006(H1N... 32.2 12
gb|CY022053.1| Influenza A virus (A/swine/Tennessee/17/1976(H... 32.2 12
gb|CY022045.1| Influenza A virus (A/swine/Tennessee/15/1976(H... 32.2 12
gb|CY021957.1| Influenza A virus (A/New Jersey/1976(H1N1)) se... 32.2 12
dbj|AB294217.1| Influenza A virus (A/swine/Miyagi/5/2003(H1N2... 32.2 12
gb|EF101741.1| Influenza A virus (A/Philippines/344/2004(H1N2... 32.2 12
gb|L09063.1|FLAH1N1F Influenza A virus (A/swine/Nebraska/1/92... 32.2 12
gb|DQ280219.1| Influenza A virus (A/swine/Ontario/53518/03(H1... 32.2 12
gb|DQ139320.1| Influenza A virus (A/swine/Zhejiang/1/2004(H1N... 32.2 12
gb|AY060052.1| Influenza A virus (A/SW/MN/17138/01(H1N2)) hem... 32.2 12
gb|AY060051.1| Influenza A virus (A/SW/MN/34893/01(H1N2)) hem... 32.2 12
gb|AY060045.1| Influenza A virus (A/SW/OH/7802/00(H1N2)) hema... 32.2 12
gb|AY060044.1| Influenza A virus (A/SW/NE/18339/01(H1N2)) hem... 32.2 12
gb|AY060040.1| Influenza A virus (A/SW/NC/17366/01(H1N2)) hem... 32.2 12
gb|AY060039.1| Influenza A virus (A/SW/IN/14810-S/01(H1N2)) h... 32.2 12
gb|AY060038.1| Influenza A virus (A/SW/IN/14810-T/01(H1N2)) h... 32.2 12
gb|AY060036.1| Influenza A virus (A/SW/MN/3128/00(H1N2)) hema... 32.2 12
gb|AY060034.1| Influenza A virus (A/SW/KS/13481-S/00(H1N2)) h... 32.2 12
gb|AY060033.1| Influenza A virus (A/SW/KS/13481-T/00(H1N2)) h... 32.2 12
gb|AY060032.1| Influenza A virus (A/SW/MN/13130/00(H1N2)) hem... 32.2 12
gb|AY060031.1| Influenza A virus (A/SW/MN/12883/00(H1N2)) hem... 32.2 12
gb|AY060030.1| Influenza A virus (A/SW/AR/12491/00(H1N2)) hem... 32.2 12
gb|AY038014.1| Influenza A virus (A/Turkey/MO/24093/99(H1N2))... 32.2 12
gb|AF455680.1| Influenza A virus (A/Swine/Indiana/P12439/00 (... 32.2 12
gb|AF455677.1| Influenza A virus (A/Swine/North Carolina/9352... 32.2 12
gb|S67220.1| hemagglutinin [H1N1 swine influenza virus, A/Swi... 32.2 12
gb|K00992.1|FLAHAMB Influenza A virus (A/swine/New Jersey/11/... 32.2 12
gb|AF342821.1| Influenza A virus (A/Wisconsin/10/98 (H1N1)) h... 32.2 12
gb|AF222034.1|AF222034 Influenza A virus (A/Swine/Wisconsin/4... 32.2 12
gb|AF222031.1|AF222031 Influenza A virus (A/Swine/Wisconsin/1... 32.2 12
gb|AF222030.1|AF222030 Influenza A virus (A/Swine/Wisconsin/1... 32.2 12
gb|AF222029.1|AF222029 Influenza A virus (A/Swine/Wisconsin/1... 32.2 12
gb|AF222028.1|AF222028 Influenza A virus (A/Swine/Wisconsin/1... 32.2 12
emb|Z46436.1| Influenza virus H1N1 mRNA for hemagglutinin HA1... 32.2 12
emb|X57493.1| Influenza A virus (A/swine/Illinois/63(H1N1)) H... 32.2 12
emb|X57491.1| Influenza A virus (A/sw/Hong Kong/1/1974(H1N1))... 32.2 12
dbj|AK112686.1| Ciona intestinalis cDNA, clone:cieg030o18, fu... 32.2 12
gb|AF091307.1|AF091307 Influenza A virus (A/swine/Wisconsin/1... 32.2 12
gb|AF091306.1|AF091306 Influenza A virus (A/swine/Hokkaido/2/... 32.2 12
gb|U47306.1|IAU47306 Influenza A virus (A/swine/Hokkaido/2/81... 32.2 12
gb|U47304.1|IAU47304 Influenza A virus (A/swine/Iowa/17672/88... 32.2 12
gb|U46783.1|IAU46783 Influenza A virus (A/swine/Beijing/47/19... 32.2 12
gb|U46020.1|IAU46020 Influenza A virus (A/swine/Hong Kong/172... 32.2 12
gb|U45452.1|IAU45452 Influenza A virus (A/swine/Hong Kong/273... 32.2 12
gb|U80948.1|IAU80948 Influenza A virus hemagglutinin (HA) gen... 32.2 12
gb|U72668.1|IAU72668 Influenza A virus hemagglutinin (HA) gen... 32.2 12
gb|U72666.1|IAU72666 Influenza A virus hemagglutinin (HA) gen... 32.2 12
gb|U53163.1|IAU53163 Influenza A virus (A/WI/4755/1994(H1N1))... 32.2 12
gb|U53162.1|IAU53162 Influenza A virus (A/WI/4754/1994(H1N1))... 32.2 12
dbj|D29657.1|FLASN2 Influenza A virus (A/swine/Nagasaki/1/199... 32.2 12
dbj|D29656.1|FLASN1 Influenza A virus (A/swine/Nagasaki/1/198... 32.2 12
gb|U03720.1|IAU03720 Influenza A virus (A/swine/QC81(H1)) hem... 32.2 12
gb|U03719.1|IAU03719 Influenza A virus (A/swine/QC91(H1)) hem... 32.2 12
gb|U04857.1|IAU04857 Influenza A virus (H1N1) A/swine/29/37 h... 32.2 12
gb|L24362.1|FLAMD1291A Influenza A virus (A/MD/12/1991(H1N1))... 32.2 12
gb|M81707.1|FLASEQ Influenza A virus (A/Swine/Indiana/1726/19... 32.2 12

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PostPosted: Wed Nov 18, 2009 9:41 pm 
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There are more PB2 changes than I expected. This travel log is in the four isolats with D225G


gb|CY047519.1| Influenza A virus (A/mallard/Alberta/11527/200... 36.2 0.76
gb|CY045556.1| Influenza A virus (A/swine/Kansas/015252/2009(... 36.2 0.76
gb|CY045548.1| Influenza A virus (A/swine/Oklahoma/001142/200... 36.2 0.76
gb|CY045462.1| Influenza A virus (A/northern shoveler/Interio... 36.2 0.76
gb|CY045446.1| Influenza A virus (A/northern shoveler/Alaska/... 36.2 0.76
gb|CY045430.1| Influenza A virus (A/mallard/Interior Alaska/7... 36.2 0.76
gb|CY045254.1| Influenza A virus (A/duck/Victoria/D23/1994(H4... 36.2 0.76
gb|CY044023.1| Influenza A virus (A/northern shoveler/Alaska/... 36.2 0.76
gb|CY043959.1| Influenza A virus (A/northern shoveler/Alaska/... 36.2 0.76
gb|CY043315.1| Influenza A virus (A/bald eagle/Virginia/Sg-00... 36.2 0.76
gb|CY042377.1| Influenza A virus (A/mallard/South Dakota/Sg-0... 36.2 0.76
gb|CY042373.1| Influenza A virus (A/mallard/South Dakota/Sg-0... 36.2 0.76
gb|CY042369.1| Influenza A virus (A/mallard/South Dakota/Sg-0... 36.2 0.76
gb|CY042283.1| Influenza A virus (A/chicken/New Jersey/Sg-002... 36.2 0.76
gb|CY042275.1| Influenza A virus (A/chicken/New Jersey/Sg-002... 36.2 0.76
gb|CY042262.1| Influenza A virus (A/chicken/New York/Sg-00260... 36.2 0.76
gb|GQ240818.1| Influenza A virus (A/mallard/Hungary/19616/200... 36.2 0.76
gb|GQ257454.1| Influenza A virus (A/mallard/Maryland/13/2003(... 36.2 0.76
dbj|AB509998.1| Influenza A virus (A/duck/Siberia/298/2001(H3... 36.2 0.76
gb|GQ229337.1| Influenza A virus (A/swine/Hong Kong/1562/2005... 36.2 0.76
gb|CY039577.1| Influenza A virus (A/northern shoveler/Califor... 36.2 0.76
gb|CY039863.1| Influenza A virus (A/mallard/Interior Alaska/3... 36.2 0.76
gb|CY039855.1| Influenza A virus (A/mallard/Interior Alaska/5... 36.2 0.76
gb|CY039847.1| Influenza A virus (A/mallard/Interior Alaska/7... 36.2 0.76
gb|CY039823.1| Influenza A virus (A/northern shoveler/Interio... 36.2 0.76
gb|CY039807.1| Influenza A virus (A/mallard/Interior Alaska/2... 36.2 0.76
gb|CY039799.1| Influenza A virus (A/American green-winged tea... 36.2 0.76
gb|FJ519994.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|FJ519995.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|FJ519996.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|FJ520007.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|FJ520014.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|FJ520016.1| Influenza A virus (A/northern pintail/Californ... 36.2 0.76
gb|CY038471.1| Influenza A virus (A/chicken/Pakistan/UDL-03/2... 36.2 0.76
gb|CY038463.1| Influenza A virus (A/chicken/Pakistan/UDL-02/2... 36.2 0.76
gb|CY038455.1| Influenza A virus (A/chicken/Pakistan/UDL-01/2... 36.2 0.76
gb|CY038447.1| Influenza A virus (A/chicken/Pakistan/UDL-03/2... 36.2 0.76
gb|CY038439.1| Influenza A virus (A/chicken/Pakistan/UDL-03/2... 36.2 0.76
gb|CY038431.1| Influenza A virus (A/chicken/Pakistan/UDL-02/2... 36.2 0.76
gb|CY038423.1| Influenza A virus (A/chicken/Pakistan/UDL-01/2... 36.2 0.76
gb|CY038415.1| Influenza A virus (A/chicken/Pakistan/UDL-02/2... 36.2 0.76
gb|CY038407.1| Influenza A virus (A/chicken/Pakistan/UDL-01/2... 36.2 0.76
gb|CY038399.1| Influenza A virus (A/chicken/Pakistan/UDL-04/2... 36.2 0.76
gb|CY038383.1| Influenza A virus (A/American green-winged tea... 36.2 0.76
gb|FJ461606.1| Influenza A virus (A/swine/Korea/C12/2008(H5N2... 36.2 0.76
dbj|AB478619.1| Influenza A virus (A/duck/Hokkaido/w206/2006(... 36.2 0.76
dbj|AB478616.1| Influenza A virus (A/duck/Hokkaido/W109/2004(... 36.2 0.76
gb|FJ610069.1| Influenza A virus (A/chicken/Michoacan/28159-5... 36.2 0.76
gb|FJ610075.1| Influenza A virus (A/chicken/Jalisco/28159-600... 36.2 0.76
gb|FJ610081.1| Influenza A virus (A/chicken/Queretero/7653-20... 36.2 0.76
gb|FJ610087.1| Influenza A virus (A/chicken/Chiapas/28159-488... 36.2 0.76
gb|FJ610093.1| Influenza A virus (A/chicken/Hidalgo/28159-460... 36.2 0.76
gb|FJ610101.1| Influenza A virus (A/chicken/Puebla/14587-644/... 36.2 0.76
gb|FJ610107.1| Influenza A virus (A/chicken/Mexico/31381-2/19... 36.2 0.76
gb|FJ610115.1| Influenza A virus (A/chicken/Jalisco/14589-660... 36.2 0.76
gb|FJ610121.1| Influenza A virus (A/chicken/Queretero/14588-1... 36.2 0.76
gb|CY036766.1| Influenza A virus (A/mallard/Wisconsin/944/198... 36.2 0.76
gb|FJ517301.1| Influenza A virus (A/mallard/Minnesota/354/199... 36.2 0.76
gb|EU557384.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|EU557385.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|EU557388.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|EU557392.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|EU557393.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|EU557394.1| Influenza A virus (A/northern pintail/Alaska/4... 36.2 0.76
gb|CY035697.1| Influenza A virus (A/avian/New York/Sg-00327/1... 36.2 0.76
gb|CY035693.1| Influenza A virus (A/avian/New York/Sg-00326/1... 36.2 0.76
gb|CY035658.1| Influenza A virus (A/chuckar/New Jersey/Sg-003... 36.2 0.76
gb|CY035654.1| Influenza A virus (A/waterfowl/New Jersey/Sg-0... 36.2 0.76
gb|CY035650.1| Influenza A virus (A/duck/New Jersey/Sg-00315/... 36.2 0.76
gb|CY035513.1| Influenza A virus (A/guinea fowl/New York/Sg-0... 36.2 0.76
gb|CY035499.1| Influenza A virus (A/chicken/New York/Sg-00273... 36.2 0.76
gb|CY035496.1| Influenza A virus (A/guinea fowl/New York/Sg-0... 36.2 0.76
gb|CY035482.1| Influenza A virus (A/chicken/New Jersey/Sg-002... 36.2 0.76
gb|CY035480.1| Influenza A virus (A/duck/New Jersey/Sg-00266/... 36.2 0.76
gb|CY035478.1| Influenza A virus (A/guinea fowl/New Jersey/Sg... 36.2 0.76
gb|CY035477.1| Influenza A virus (A/chicken/New Jersey/Sg-002... 36.2 0.76
gb|CY035471.1| Influenza A virus (A/guinea fowl/New York/Sg-0... 36.2 0.76
gb|CY035457.1| Influenza A virus (A/chicken/New York/Sg-00256... 36.2 0.76
gb|FJ357119.1| Influenza A virus (A/mallard/MD/26/2003(H1N1))... 36.2 0.76
gb|FJ357127.1| Influenza A virus (A/mallard/MD/41/2003(H1N1))... 36.2 0.76
gb|FJ357135.1| Influenza A virus (A/mallard/MD/42/2003(H1N1))... 36.2 0.76
gb|FJ357143.1| Influenza A virus (A/mallard/MD/53/2003(H1N1))... 36.2 0.76
gb|EU980515.1| Influenza A virus (A/mallard/MD/11/2003(H1N1))... 36.2 0.76
gb|EU980523.1| Influenza A virus (A/mallard/MD/199/2003(H1N1)... 36.2 0.76
gb|EU871906.1| Influenza A virus (A/mallard/MN/113/2000(H5N2)... 36.2 0.76
gb|EU871913.1| Influenza A virus (A/mallard/MN/479/2000(H5N3)... 36.2 0.76
gb|EU743093.1| Influenza A virus (A/chicken/NJ/17169/1993(H5N... 36.2 0.76
gb|EU743034.1| Influenza A virus (A/chicken/NY/14009/1993(H5N... 36.2 0.76
gb|EU743105.1| Influenza A virus (A/chicken/FL/25717/1993(H5N... 36.2 0.76
gb|EU743113.1| Influenza A virus (A/rhea/TX/39923/1993(H5N2))... 36.2 0.76
gb|EU743174.1| Influenza A virus (A/turkey/SD/7034/1986(H1N1)... 36.2 0.76
gb|EU743202.1| Influenza A virus (A/chicken/NY/11602-12/1998(... 36.2 0.76
gb|EU743313.1| Influenza A virus (A/blue winged teal/LA/B228/... 36.2 0.76
gb|EU743479.1| Influenza A virus (A/mallard/MN/109/2000(H11N9... 36.2 0.76
gb|EU743515.1| Influenza A virus (A/mallard/MN/380/1999(H3N2)... 36.2 0.76
gb|EU743523.1| Influenza A virus (A/mallard/MN/330/1999(H3N1)... 36.2 0.76
gb|EU743551.1| Influenza A virus (A/mallard/MN/99/2000(H3N6))... 36.2 0.76
gb|EU743040.1| Influenza A virus (A/emu/TX/39924/1993(H5N2)) ... 36.2 0.76
gb|EU743070.1| Influenza A virus (A/turkey/MN/10734-2/1995(H5... 36.2 0.76
gb|EU743098.1| Influenza A virus (A/chicken/PA/13609/1993(H5N... 36.2 0.76
gb|EU743500.1| Influenza A virus (A/mallard/MN/68/1999(H3N2))... 36.2 0.76
gb|EU743507.1| Influenza A virus (A/mallard/MN/290/1999(H3N2)... 36.2 0.76
gb|EU743529.1| Influenza A virus (A/mallard/MN/351/1999(H3N1)... 36.2 0.76
gb|CY029708.1| Influenza A virus (A/duck/Vietnam/50/2007(H5N1... 36.2 0.76
gb|CY028651.1| Influenza A virus (A/duck/Victoria/1992(H3N8))... 36.2 0.76
gb|CY028258.1| Influenza A virus (A/duck/Victoria/5384/2002(H... 36.2 0.76
gb|EU182250.1| Influenza A virus (A/chicken/CA/431/2000(H6N2)... 36.2 0.76
gb|EU182315.1| Influenza A virus (A/chicken/NY/14677-13/1998(... 36.2 0.76
gb|DQ979864.1| Influenza A virus (A/chicken/UP/India/2544/200... 36.2 0.76
gb|DQ979863.1| Influenza A virus (A/chicken/UP/India/2543/200... 36.2 0.76
gb|DQ979862.1| Influenza A virus (A/chicken/Haryana/India/242... 36.2 0.76
gb|DQ979861.1| Influenza A virus (A/chicken/Orissa/India/2317... 36.2 0.76
gb|EU050589.1| Influenza A virus (A/turkey/Shantou/1915/2004(... 36.2 0.76
gb|EU050588.1| Influenza A virus (A/partridge/Shantou/1913/20... 36.2 0.76
gb|CY024485.1| Influenza A virus (A/pheasant/Shantou/111/2005... 36.2 0.76
gb|CY024477.1| Influenza A virus (A/partridge/Shantou/7936/20... 36.2 0.76
gb|CY024173.1| Influenza A virus (A/pheasant/Shantou/4340/200... 36.2 0.76
gb|CY024141.1| Influenza A virus (A/partridge/Shantou/3987/20... 36.2 0.76
gb|CY023453.1| Influenza A virus (A/silky chicken/Shantou/358... 36.2 0.76
gb|CY023413.1| Influenza A virus (A/chicken/Shantou/55/2005(H... 36.2 0.76
gb|CY023405.1| Influenza A virus (A/chicken/Shantou/7920/2004... 36.2 0.76
gb|CY023333.1| Influenza A virus (A/chicken/Shantou/2994/2004... 36.2 0.76
gb|CY023325.1| Influenza A virus (A/chicken/Shantou/2692/2004... 36.2 0.76
gb|CY023309.1| Influenza A virus (A/chicken/Shantou/1926/2004... 36.2 0.76
gb|CY023301.1| Influenza A virus (A/silky chicken/Shantou/182... 36.2 0.76
gb|CY023101.1| Influenza A virus (A/chicken/Shantou/5714/2001... 36.2 0.76
gb|CY024801.1| Influenza A virus (A/mallard/Maryland/1983/200... 36.2 0.76
gb|EU026089.1| Influenza A virus (A/mallard/MD/403/2002(H1N1)... 36.2 0.76
gb|EF681875.1| Influenza A virus (A/chicken/Taiwan/2838V/00(H... 36.2 0.76
gb|EF681867.1| Influenza A virus (A/chicken/Taiwan/2838N/00(H... 36.2 0.76
gb|CY022716.1| Influenza A virus (A/emu/New South Wales/775/1... 36.2 0.76
gb|CY022708.1| Influenza A virus (A/chicken/New South Wales/3... 36.2 0.76
gb|CY022700.1| Influenza A virus (A/chicken/New South Wales/2... 36.2 0.76
gb|CY021668.1| Influenza A virus (A/mallard/Ohio/173/1990(H11... 36.2 0.76
gb|CY021644.1| Influenza A virus (A/mallard/Delaware/418/2005... 36.2 0.76
gb|CY021484.1| Influenza A virus (A/mallard/Maryland/2022/200... 36.2 0.76
gb|CY021452.1| Influenza A virus (A/blue-winged teal/Ohio/96/... 36.2 0.76
gb|CY020988.1| Influenza A virus (A/mallard/Ohio/129/1989(H4N... 36.2 0.76
gb|CY020972.1| Influenza A virus (A/blue-winged teal/Ohio/101... 36.2 0.76
gb|CY020948.1| Influenza A virus (A/mallard/Ohio/568/1987(H11... 36.2 0.76
gb|CY020932.1| Influenza A virus (A/mallard/Ohio/122/1989(H10... 36.2 0.76
gb|CY020852.1| Influenza A virus (A/pintail/Ohio/73/1989(H6N2... 36.2 0.76
gb|CY020756.1| Influenza A virus (A/blue-winged teal/Ohio/989... 36.2 0.76
gb|CY011055.2| Influenza A virus (A/blue-winged teal/Ohio/908... 36.2 0.76
gb|CY018014.1| Influenza A virus (A/green-winged teal/Ohio/20... 36.2 0.76
gb|CY017780.1| Influenza A virus (A/longtail duck/Maryland/29... 36.2 0.76
gb|CY017748.1| Influenza A virus (A/pintail/Alaska/310/2005(H... 36.2 0.76
gb|CY017716.1| Influenza A virus (A/mallard/Ohio/156/1990(H3N... 36.2 0.76
gb|CY016187.1| Influenza A virus (A/pintail/Alaska/211/2005(H... 36.2 0.76
gb|CY016426.1| Influenza A virus (A/mallard/Ohio/409/1988(H12... 36.2 0.76
gb|CY016402.1| Influenza A virus (A/mallard/Ohio/264/1986(H3N... 36.2 0.76
gb|CY015483.1| Influenza A virus (A/mallard/Ohio/249/1998(H6N... 36.2 0.76
gb|CY015466.1| Influenza A virus (A/green-winged teal/Ohio/34... 36.2 0.76
gb|CY015142.1| Influenza A virus (A/ruddy turnstone/Delaware/... 36.2 0.76
gb|CY015103.1| Influenza A virus (A/chicken/Queretaro/14588-1... 36.2 0.76
gb|CY014895.1| Influenza A virus (A/duck/New York/16873/1999(... 36.2 0.76
gb|CY014887.1| Influenza A virus (A/chicken/New York/14677-13... 36.2 0.76
gb|CY014836.1| Influenza A virus (A/guinea fowl/New York/2022... 36.2 0.76
gb|CY014828.1| Influenza A virus (A/chicken/New York/13828-3/... 36.2 0.76
gb|CY014555.1| Influenza A virus (A/mallard duck/Alberta/331/... 36.2 0.76
gb|CY014559.1| Influenza A virus (A/mallard duck/Alberta/323/... 36.2 0.76
gb|CY013270.1| Influenza A virus (A/pintail/Alaska/53/2005(H3... 36.2 0.76
gb|DQ376879.1| Influenza A virus (A/duck/Taiwan/WB29/99(H6N1)... 36.2 0.76
gb|DQ376878.1| Influenza A virus (A/chicken/Taiwan/165/99(H6N... 36.2 0.76
gb|DQ376876.1| Influenza A virus (A/chicken/Taiwan/0705/99(H6... 36.2 0.76
gb|DQ376875.1| Influenza A virus (A/chicken/Taiwan/ns2/99(H6N... 36.2 0.76
gb|DQ376874.1| Influenza A virus (A/chicken/Taiwan/na3/98(H6N... 36.2 0.76
gb|DQ376873.1| Influenza A virus (A/chicken/Taiwan/0824/97(H6... 36.2 0.76
gb|CY012815.1| Influenza A virus (A/mallard/Ohio/298/1987(H4N... 36.2 0.76
gb|CY011047.1| Influenza A virus (A/green-winged teal/Ohio/43... 36.2 0.76
gb|CY012807.1| Influenza A virus (A/mallard/Ohio/171/1990(H1N... 36.2 0.76
dbj|AB266085.1| Influenza A virus (A/duck/Hokkaido/1058/01(H4... 36.2 0.76
gb|AF508644.1| Influenza A virus (A/Duck/Germany/113/95(H9N2)... 36.2 0.76
gb|AY849782.1| Influenza A virus (A/chicken/TX/167280-4/02(H5... 36.2 0.76
gb|AF457714.1| Influenza A virus (A/chicken/California/1002a/... 36.2 0.76
gb|AF457697.1| Influenza A virus (A/chicken/California/431/00... 36.2 0.76
gb|AF457689.1| Influenza A virus (A/chicken/California/465/00... 36.2 0.76
gb|AF457672.1| Influenza A virus (A/chicken/California/905/01... 36.2 0.76
gb|CY005468.1| Influenza A virus (A/Duck/Nanchang/8-174/2000(... 36.2 0.76
gb|CY005460.1| Influenza A virus (A/Quail/Nanchang/7-026/2000... 36.2 0.76
gb|CY005453.1| Influenza A virus (A/Chicken/Nanchang/7-010/20... 36.2 0.76
gb|CY005844.1| Influenza A virus (A/chicken/Chis/15224/1997(H... 36.2 0.76
gb|CY005838.1| Influenza A virus (A/chicken/Hidalgo/28159-232... 36.2 0.76
gb|CY005091.1| Influenza A virus (A/pintail/Alberta/129/1993(... 36.2 0.76
gb|CY005085.1| Influenza A virus (A/red knot/NJ/325/1989(H7N7... 36.2 0.76
gb|CY004910.1| Influenza A virus (A/blue-winged teal/ALB/293/... 36.2 0.76
gb|CY004867.1| Influenza A virus (A/ruddy turnstone/DE/512/19... 36.2 0.76
gb|CY005199.1| Influenza A virus (A/mallard duck/ALB/742/1981... 36.2 0.76
gb|CY004874.1| Influenza A virus (A/knot/DE/541/1988(H4N6)) s... 36.2 0.76
gb|CY004699.1| Influenza A virus (A/mallard/ALB/118/1995(H3N5... 36.2 0.76
gb|CY004538.1| Influenza A virus (A/mallard duck/ALB/322/1988... 36.2 0.76
gb|CY004514.1| Influenza A virus (A/mallard/ALB/201/1998(H1N1... 36.2 0.76
gb|CY003967.1| Influenza A virus (A/blue-winged teal/ALB/16/1... 36.2 0.76
gb|CY003959.1| Influenza A virus (A/mallard/ALB/202/1996(H2N5... 36.2 0.76
gb|AF255624.1|AF255624 Influenza A virus (A/chicken/Taiwan/7-... 36.2 0.76
emb|AJ410599.1| Influenza A virus genomic RNA partial for pol... 36.2 0.76
gb|AF098589.1|AF098589 Influenza A virus (A/Chicken/Queretaro... 36.2 0.76
gb|AF098588.1|AF098588 Influenza A virus (A/Chicken/Puebla/14... 36.2 0.76
gb|AF098587.1|AF098587 Influenza A virus (A/Chicken/Puebla/86... 36.2 0.76
gb|AF098586.1|AF098586 Influenza A virus (A/Chicken/Mexico/26... 36.2 0.76
gb|AF098585.1|AF098585 Influenza A virus (A/Chicken/Hidalgo/2... 36.2 0.76
gb|AF156434.1|AF156434 Influenza A virus (A/Duck/Hong Kong/Y4... 36.2 0.76

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