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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Thu Sep 10, 2009 2:41 pm 
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I223V travel log

gb|EU557559.1| Influenza A virus (A/northern pintail/Alaska/4... 34.2 2.9
gb|EF607904.1| Influenza A virus (A/duck/NY/15024-21/1996(H1N... 34.2 2.9

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Thu Sep 10, 2009 5:22 pm 
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Two American campers developed Tamiflu-resistant swine flu earlier this summer, the best evidence to date that resistant pandemic viruses may have passed from one person to another, the U.S. Centers for Disease Control reported Thursday.

Viruses from both campers contained a mutation that hasn't been seen before with the pandemic virus, a finding that heightens suspicions that drug resistant virus was either transmitted from one child to the other or that both were infected by someone else who wasn't turned up in the investigation.

The previously identified cases of Tamiflu-resistant swine flu viruses have been isolated -- people who took the drug, either for prevention or treatment. There was one exception: a girl from San Francisco who hadn't taken the drug and therefore must have caught a resistant virus from someone else. The source was never identified.

"These are a bit different in that they were linked to each other, which suggests that resistant virus was likely either transmitted to both of them from somebody else or transmitted from one to the other," Dr. Zach Moore, a respiratory disease epidemiologist with the North Carolina division of public health in Raleigh, said of the campers.

Moore was one of the authors of the study, which was published Thursday in Morbidity and Mortality Weekly Report, the CDC's weekly fast-track public health journal.

Moore said there is also a possibility that resistance developed independently in both of these campers. But the presence of the new mutation in viruses found in both girls makes that option seem less likely, said Dr. Frederick Hayden, a leading antiviral expert at the University of Virginia.

"It does serve as another ... marker to suggest that the virus that the two girls had might be the same one," Hayden said when asked to comment on the report. He was not involved in the investigation.

The CDC said the function of the new mutation, at position 223, isn't yet known.

But Hayden said a similar mutation has been reported in the H3N2 seasonal flu virus. In H3N2, the 223 mutation isn't enough to trigger resistance on its own. But when found in combination with another mutation -- which the North Carolina viruses had -- it further reduces response to the drug.

The report brings to 21 the number of known cases of novel H1N1 resistance to oseltamivir or Tamiflu, said Charles Penn, an antiviral expert with the World Health Organization. Those cases have occurred in Denmark, Japan, China (on the mainland and in Hong Kong), Canada, the United States and Singapore.

Penn said all those viruses were sensitive to zanamivir or Relenza, a drug in the same class as Tamiflu.

The camp outbreak occurred in July and it appears that if there was spread of resistant viruses there, the chain of transmission was subsequently broken.

"There's no evidence that this has become widespread," Moore said, noting his department sent a larger than normal number of viruses to the CDC for drug susceptibility testing after the outbreak to see if there might be spread elsewhere in the state.

Of 59 viruses checked, none carried the mutation known to render these viruses resistant to Tamiflu. And none carried the additional mutation seen in the viruses from the campers.

The adolescent girls shared a cabin and both developed swine flu despite being given the drug on a preventative basis. The camp they were attending was experiencing a large swine flu outbreak and over 400 campers and nearly 200 staff members were given Tamiflu or Relenza to try to prevent infection.

An editorial commentary following the article noted these cases underscore the importance of not giving healthy people oseltamivir -- sold as Tamiflu -- to prevent infection after they've been exposed to the pandemic virus. Using the drug to prevent infection is called prophylaxis.
http://www.ctv.ca/servlet/ArticleNews/s ... th&s_name=


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 Post subject: Most Germans don't want swine flu vaccinations
PostPosted: Thu Sep 10, 2009 5:38 pm 
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Posts: 274
A new study conducted by the Forsa Institute for DAK, one of Germany's largest health insurers, revealed that a surprising number of Germans do not plan to get immunized.

In the study of 1,001 people aged between 18 and 60 years, 62 percent said they would "definitely not," or "almost definitely not" let themselves be vaccinated this autumn when the first swine flu vaccines become available.

Eighty-two percent of Germans said that swine flu poses a "fairly low" or "very low" danger.

Bavarians, in Germany's south, in particular rejected vaccination. Only nine percent said they would "definitely" go to their doctor to be immunized compared to 14 percent of Germans on average. It's a different picture in eastern Germany, where almost a quarter of those who took part in the study said they were "definitely" going to get immunized
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The German Medical Association is urging the government to reassess its mass vaccinations plan, the largest such scheme in postwar history.

"Many people have already had swine flu and never even noticed that had it," said Frank Ulrich Montgomery, the association's vice president.

Montgomery also questioned whether the risks of vaccinating outweigh those of actually getting swine flu. Swine flu is highly infectious but it produces fairly mild symptoms and no one in Germany has died of it so far
------------------
"The disease could take a turn for the worse, and claim its first fatalities," said Deputy Health Minister Klaus Theo Schroeder.

"I have the impression that we are now able to do that which we need to do in the next few weeks," he added.

The first vaccinations are expected to be available in October and more units will be delivered on a weekly basis. Schroeder said mass vaccinations should be completed by the end of January or early February next year.

Testing of the vaccine is ongoing. In one pilot study, it was shown that a single vaccination was enough to provide protection in 80 percent of all test persons
------------------
http://www.dw-world.de/dw/article/0,,4658827,00.html


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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Fri Sep 11, 2009 7:02 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
A PERTH man is criticaly ill after becoming the first person in Australia to contract a strain of swine flu resistant to the antiviral drug Tamiflu.

WA Health confirmed the 38-year-old man, who has a weakened immune system, initially responded to the drug but developed a resistant strain of the virus when his illness relapsed.

There have been 13 cases of Tamiflu-resistant infections reported around the world.

WA's Chief Health Officer Dr Tarun Weeramanthri said in a statement this was a rare and isolated case and did not pose a risk to the public.

``There is no evidence that the virus has spread to other people - none of the patient's family or hospital staff caring for him have contracted the virus, and he has not been in contact with the wider community,'' he said.

http://www.news.com.au/perthnow/story/0 ... 61,00.html

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Fri Sep 11, 2009 7:40 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
Here is the updated NA travel log for the Texas isolate.

Polymorphism 1
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ496148.1| Influenza A virus (A/Vladivostok/IIV18/2009(H1... 36.2 0.74
gb|GQ496143.1| Influenza A virus (A/Vladivostok/IIV17/2009(H1... 36.2 0.74
gb|GQ455034.1| Influenza A virus (A/Nanjing/2/2009(H1N1)) seg... 36.2 0.74
gb|GQ359760.1| Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(... 36.2 0.74
gb|GQ338418.1| Influenza A virus (A/Indiana/12/2009(H1N1)) se... 36.2 0.74
gb|GQ338401.1| Influenza A virus (A/Pennsylvania/10/2009(H1N1... 36.2 0.74
gb|GQ323529.1| Influenza A virus (A/Illinois/04/2009(H1N1)) s... 36.2 0.74
gb|GQ323493.1| Influenza A virus (A/Arkansas/03/2009(H1N1)) s... 36.2 0.74
gb|GQ243754.1| Influenza A virus (A/Philippines/2001/2009(H1N... 36.2 0.74
gb|GQ166224.1| Influenza A virus (A/Sichuan/1/2009(H1N1)) seg... 36.2 0.74

H274Y
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ499337.1| Influenza A virus (A/Washington/28/2009(H1N1))... 36.2 0.74
gb|GQ499335.1| Influenza A virus (A/Washington/29/2009(H1N1))... 36.2 0.74
gb|GQ463202.1| Influenza A virus (A/Hunan/SWL3/2009(H1N1)) se... 36.2 0.74
gb|CY043352.1| Influenza A virus (A/Denmark/528/2009(H1N1)) s... 36.2 0.74
gb|GQ397279.1| Influenza A virus (A/Yamaguchi/22/2009(H1N1)) ... 36.2 0.74
gb|GQ365445.1| Influenza A virus (A/Osaka/180/2009(H1N1)) seg... 36.2 0.74
gb|GQ351316.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 36.2 0.74
gb|EU567011.1| Influenza A virus (A/Indiana/01/2008(H1N1)) se... 36.2 0.74
gb|DQ493078.1| Influenza A virus (A/Vietnam/CL2009/2005(H5N1)... 36.2 0.74
gb|DQ250165.1| Influenza A virus (A/Vietnam/CL2009/2005(H5N1)... 36.2 0.74

Polymorphism 3
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ496148.1| Influenza A virus (A/Vladivostok/IIV18/2009(H1... 36.2 0.74
gb|GQ496143.1| Influenza A virus (A/Vladivostok/IIV17/2009(H1... 36.2 0.74
gb|GQ455034.1| Influenza A virus (A/Nanjing/2/2009(H1N1)) seg... 36.2 0.74
gb|GQ359760.1| Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(... 36.2 0.74
gb|GQ338418.1| Influenza A virus (A/Indiana/12/2009(H1N1)) se... 36.2 0.74
gb|GQ338401.1| Influenza A virus (A/Pennsylvania/10/2009(H1N1... 36.2 0.74
gb|GQ323529.1| Influenza A virus (A/Illinois/04/2009(H1N1)) s... 36.2 0.74
gb|GQ323493.1| Influenza A virus (A/Arkansas/03/2009(H1N1)) s... 36.2 0.74
gb|GQ243754.1| Influenza A virus (A/Philippines/2001/2009(H1N... 36.2 0.74
gb|GQ166224.1| Influenza A virus (A/Sichuan/1/2009(H1N1)) seg... 36.2 0.74
dbj|AB458249.1| Influenza A virus (A/whooper swan/Aomori/2/20... 36.2 0.74
gb|EU430497.1| Influenza A virus (A/domestic green-winged tea... 36.2 0.74
gb|EU430510.1| Influenza A virus (A/domestic green-winged tea... 36.2 0.74
gb|EF124329.1| Influenza A virus (A/goose/Yunnan/3644/2005(H5... 36.2 0.74
gb|EF124310.1| Influenza A virus (A/goose/Yunnan/3315/2005(H5... 36.2 0.74
gb|EF124301.1| Influenza A virus (A/goose/Yunnan/5299/2005(H5... 36.2 0.74
gb|EF124300.1| Influenza A virus (A/duck/Yunnan/5236/2005(H5N... 36.2 0.74
gb|EF124218.1| Influenza A virus (A/goose/Yunnan/5539/2005(H5... 36.2 0.74
gb|EF124217.1| Influenza A virus (A/duck/Yunnan/5133/2005(H5N... 36.2 0.74
gb|DQ997333.1| Influenza A virus (A/chicken/Jilin/hl/2004(H5N... 36.2 0.74
gb|DQ997326.1| Influenza A virus (A/chicken/Jilin/hk/2004(H5N... 36.2 0.74
gb|CY016901.1| Influenza A virus (A/duck/Egypt/2253-3/2006(H5... 36.2 0.74
gb|CY014470.1| Influenza A virus (A/Indonesia/CDC625L/2006(H5... 36.2 0.74
gb|CY014438.1| Influenza A virus (A/Indonesia/CDC625/2006(H5N... 36.2 0.74
gb|AY585407.1| Influenza A virus (A/duck/Guangdong/40/2000(H5... 36.2 0.74

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Fri Sep 11, 2009 11:10 pm 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
Week 35 report still has 9 cases, but description is inconsistant. It now looks like only one of the 8 was done by an independent lab, at that one was the hospitalized nortehrn California case, which STILL has not been linked to Tamiflu usage.

This is above the table (same as last week)
Three state public health laboratories perform antiviral testing and report their results to CDC. Two additional oseltamivir resistant 2009 influenza A (H1N1) viruses have been identified by these laboratories. The results of antiviral resistance testing performed on these viruses are summarized in the table below.

This is below
All of the nine patients (includes the eight viruses detected at CDC and one identified by a state public health laboratory) had documented exposure to oseltamivir through either treatment or chemoprophylaxis, and the remaining patient is currently under investigation to determine exposure to oseltamivir.

http://www.cdc.gov/flu/weekly/index.htm

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Sat Sep 12, 2009 2:20 am 
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Joined: Wed Aug 19, 2009 10:07 am
Posts: 765
Location: Southern California
Swine flu death toll over 3,200; cases of Tamiflu resistance rise to 23
http://www.google.com/hostednews/canadi ... 93i8MsbVew


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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Sat Sep 12, 2009 6:43 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
Angel_B wrote:
Swine flu death toll over 3,200; cases of Tamiflu resistance rise to 23
http://www.google.com/hostednews/canadi ... 93i8MsbVew

The number of Tamiflu cases is largely a reporting/testing issue. This week cases in Hong Kong, Israel and Austrailia were identified, and the camper to camper transmission in NC, and H2H in Hong Kong were detailed.

The US has acknowleged 9 cases - (WA 2, NC 2, TX 2, CA, and 2 unknown locations). There are also 3 reported cases in Hong Kong and 3 in Japan, and at least 1 in Hunan, Singapore, Denmark, Canada, Thailand, Israel, Australia and possibly Vietnam.

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Sun Sep 13, 2009 7:58 am 
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Joined: Wed Aug 19, 2009 10:42 am
Posts: 6528
Location: Pittsburgh, PA USA
niman wrote:
Here is the updated NA travel log for the Texas isolate.

Polymorphism 1
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ496148.1| Influenza A virus (A/Vladivostok/IIV18/2009(H1... 36.2 0.74
gb|GQ496143.1| Influenza A virus (A/Vladivostok/IIV17/2009(H1... 36.2 0.74
gb|GQ455034.1| Influenza A virus (A/Nanjing/2/2009(H1N1)) seg... 36.2 0.74
gb|GQ359760.1| Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(... 36.2 0.74
gb|GQ338418.1| Influenza A virus (A/Indiana/12/2009(H1N1)) se... 36.2 0.74
gb|GQ338401.1| Influenza A virus (A/Pennsylvania/10/2009(H1N1... 36.2 0.74
gb|GQ323529.1| Influenza A virus (A/Illinois/04/2009(H1N1)) s... 36.2 0.74
gb|GQ323493.1| Influenza A virus (A/Arkansas/03/2009(H1N1)) s... 36.2 0.74
gb|GQ243754.1| Influenza A virus (A/Philippines/2001/2009(H1N... 36.2 0.74
gb|GQ166224.1| Influenza A virus (A/Sichuan/1/2009(H1N1)) seg... 36.2 0.74

H274Y
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ499337.1| Influenza A virus (A/Washington/28/2009(H1N1))... 36.2 0.74
gb|GQ499335.1| Influenza A virus (A/Washington/29/2009(H1N1))... 36.2 0.74
gb|GQ463202.1| Influenza A virus (A/Hunan/SWL3/2009(H1N1)) se... 36.2 0.74
gb|CY043352.1| Influenza A virus (A/Denmark/528/2009(H1N1)) s... 36.2 0.74
gb|GQ397279.1| Influenza A virus (A/Yamaguchi/22/2009(H1N1)) ... 36.2 0.74
gb|GQ365445.1| Influenza A virus (A/Osaka/180/2009(H1N1)) seg... 36.2 0.74
gb|GQ351316.1| Influenza A virus (A/Hong Kong/2369/2009(H1N1)... 36.2 0.74
gb|EU567011.1| Influenza A virus (A/Indiana/01/2008(H1N1)) se... 36.2 0.74
gb|DQ493078.1| Influenza A virus (A/Vietnam/CL2009/2005(H5N1)... 36.2 0.74
gb|DQ250165.1| Influenza A virus (A/Vietnam/CL2009/2005(H5N1)... 36.2 0.74

Polymorphism 3
gb|GQ894921.1| Influenza A virus (A/Texas/47/2009(H1N1)) segm... 36.2 0.74
gb|GQ496148.1| Influenza A virus (A/Vladivostok/IIV18/2009(H1... 36.2 0.74
gb|GQ496143.1| Influenza A virus (A/Vladivostok/IIV17/2009(H1... 36.2 0.74
gb|GQ455034.1| Influenza A virus (A/Nanjing/2/2009(H1N1)) seg... 36.2 0.74
gb|GQ359760.1| Influenza A virus (A/Zhejiang/DTID-ZJU01/2009(... 36.2 0.74
gb|GQ338418.1| Influenza A virus (A/Indiana/12/2009(H1N1)) se... 36.2 0.74
gb|GQ338401.1| Influenza A virus (A/Pennsylvania/10/2009(H1N1... 36.2 0.74
gb|GQ323529.1| Influenza A virus (A/Illinois/04/2009(H1N1)) s... 36.2 0.74
gb|GQ323493.1| Influenza A virus (A/Arkansas/03/2009(H1N1)) s... 36.2 0.74
gb|GQ243754.1| Influenza A virus (A/Philippines/2001/2009(H1N... 36.2 0.74
gb|GQ166224.1| Influenza A virus (A/Sichuan/1/2009(H1N1)) seg... 36.2 0.74
dbj|AB458249.1| Influenza A virus (A/whooper swan/Aomori/2/20... 36.2 0.74
gb|EU430497.1| Influenza A virus (A/domestic green-winged tea... 36.2 0.74
gb|EU430510.1| Influenza A virus (A/domestic green-winged tea... 36.2 0.74
gb|EF124329.1| Influenza A virus (A/goose/Yunnan/3644/2005(H5... 36.2 0.74
gb|EF124310.1| Influenza A virus (A/goose/Yunnan/3315/2005(H5... 36.2 0.74
gb|EF124301.1| Influenza A virus (A/goose/Yunnan/5299/2005(H5... 36.2 0.74
gb|EF124300.1| Influenza A virus (A/duck/Yunnan/5236/2005(H5N... 36.2 0.74
gb|EF124218.1| Influenza A virus (A/goose/Yunnan/5539/2005(H5... 36.2 0.74
gb|EF124217.1| Influenza A virus (A/duck/Yunnan/5133/2005(H5N... 36.2 0.74
gb|DQ997333.1| Influenza A virus (A/chicken/Jilin/hl/2004(H5N... 36.2 0.74
gb|DQ997326.1| Influenza A virus (A/chicken/Jilin/hk/2004(H5N... 36.2 0.74
gb|CY016901.1| Influenza A virus (A/duck/Egypt/2253-3/2006(H5... 36.2 0.74
gb|CY014470.1| Influenza A virus (A/Indonesia/CDC625L/2006(H5... 36.2 0.74
gb|CY014438.1| Influenza A virus (A/Indonesia/CDC625/2006(H5N... 36.2 0.74
gb|AY585407.1| Influenza A virus (A/duck/Guangdong/40/2000(H5... 36.2 0.74

Almost 100 full sequences from Wisconsin were just released by JCVI through the NIAID flu sequencing program. Two of those isolates also have polymorphism 1 and 3 listed above:

gb|CY046821.1| Influenza A virus (A/Wisconsin/629-D02013/2009... 36.2 0.74
gb|CY046541.1| Influenza A virus (A/Wisconsin/629-D01313/2009... 36.2 0.74

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 Post subject: Re: Cases of Tamiflu (or other anti-viral resistance)
PostPosted: Tue Sep 15, 2009 12:48 pm 
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Joined: Wed Aug 19, 2009 12:00 pm
Posts: 698
Alberta has first case of drug-resistant swine flu

http://www.cbc.ca/canada/edmonton/story ... e-flu.html


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